Reorged the order of the indexers

Author: oblodgett

agr_indexer/src/main/java/org/alliancegenome/indexer/config/IndexerConfig.java

@@ -28,39 +28,41 @@
 public enum IndexerConfig {
 
 	// Neo Indexers
-	ModelIndexer("model", ModelIndexer.class, 4, 1500, 1426, 4, 1, false),
+	ModelIndexer("model", ModelIndexer.class, 4, 1500, 1426, 4, 1, true),
 
 	// Curation Indexers
 
 	// Run Parallelly
 	ParalogyIndexer("paralogy", GeneToGeneParalogyIndexer.class, 4, 5000, 5000, 8, 1, true),
 	GOSearchResultCurationIndexer("goSearchResult", GOSearchResultCurationIndexer.class, 4, 1500, 1500, 4, 1, true),
-	HTPDatasetSearchResultCurationIndexer("htpDatasetSearchResult", HTPDatasetSearchResultCurationIndexer.class, 4, 1500, 1500, 4, 1, true),
-	LiteratureIndexer("literature", LiteratureIndexer.class, 4, 5000, 5000, 1, 1, true),
-	GeneGeneticInteractionIndexers("geneGeneticInteraction", GeneGeneticInteractionCurationIndexer.class, 4, 1500, 1500, 2, 1, true),
 	AffectedGenomicModelIndexer("affectedGenomicModels", AffectedGenomicModelCurationIndexer.class, 4, 1500, 1500, 8, 1, true),
-	DiseaseSummaryIndexer("diseaseSummary", DiseaseSummaryCurationIndexer.class, 4, 1500, 1500, 4, 1, true),
-	DiseaseSearchResultIndexer("diseaseSearchResult", DiseaseSearchResultCurationIndexer.class, 8, 50, 50, 4, 1, true),
 
+	GeneSearchResultCurationIndexer("geneSearchResult", GeneSearchResultCurationIndexer.class, 4, 1000, 1500, 4, 1, true),
+	GeneSummaryIndexer("geneSummary", GeneSummaryCurationIndexer.class, 4, 1500, 1500, 4, 1, true),
+	
+	DiseaseSearchResultIndexer("diseaseSearchResult", DiseaseSearchResultCurationIndexer.class, 8, 50, 50, 4, 1, true),
+	VariantSummaryIndexer("variantSummary", VariantSummaryCurationIndexer.class, 1, 3000, 1500, 8, 1, false),
+	GeneGeneticInteractionIndexers("geneGeneticInteraction", GeneGeneticInteractionCurationIndexer.class, 4, 1500, 1500, 2, 1, true),
+	HTPDatasetSearchResultCurationIndexer("htpDatasetSearchResult", HTPDatasetSearchResultCurationIndexer.class, 4, 1500, 1500, 4, 1, true),
+	LiteratureIndexer("literature", LiteratureIndexer.class, 4, 5000, 5000, 1, 1, true),
+	GeneExpressionAnnotationIndexer("geneExpressionAnnotation", GeneExpressionAnnotationIndexer.class, 8, 125, 2000, 4, 1, true),
 	SiteMapAccessionCurationIndexer("sitemap", SiteMapAccessionCurationIndexer.class, 4, 1500, 1500, 8, 1, true),
+	DiseaseSummaryIndexer("diseaseSummary", DiseaseSummaryCurationIndexer.class, 4, 1500, 1500, 4, 1, true),
+	// neo model indexer
+	TransgenicAlleleIndexer("transgenicAlleles", TransgenicAlleleCurationIndexer.class, 1, 3000, 1500, 8, 1, true),
 	GeneExpressionRibbonSummaryIndexer("geneExpressionRibbonSummary", GeneExpressionRibbonSummaryIndexer.class, 1, 1, 1, 1, 1, true),
 	ReleaseInfoIndexer("release", ReleaseInfoIndexer.class, 1, 1, 1, 1, 1, true),
 
-	// Run Sequentially
+	// Run Sequentially -- typically take a lot of RAM or do consolidation in memory
 	AlleleSummaryIndexer("alleleSummary", AlleleSummaryCurationIndexer.class, 4, 1500, 1500, 4, 1, false),
-	GeneSummaryIndexer("geneSummary", GeneSummaryCurationIndexer.class, 4, 1500, 1500, 4, 1, false),
 	GeneToGeneOrthologyIndexer("geneToGeneOrthology", GeneToGeneOrthologyIndexer.class, 4, 2500, 2500, 8, 1, false),
 
-	GeneExpressionAnnotationIndexer("geneExpressionAnnotation", GeneExpressionAnnotationIndexer.class, 8, 125, 2000, 4, 1, false),
-
-	PhenotypeAnnotationIndexer("phenotypeAnnotation", PhenotypeAnnotationCurationIndexer.class, 4, 1500, 1500, 2, 1, false),
-	TransgenicAlleleIndexer("transgenicAlleles", TransgenicAlleleCurationIndexer.class, 1, 3000, 1500, 8, 1, false),
 	GeneMolecularInteractionIndexers("geneMolecularInteraction", GeneMolecularInteractionCurationIndexer.class, 4, 1500, 1500, 2, 1, false),
+	
+	PhenotypeAnnotationIndexer("phenotypeAnnotation", PhenotypeAnnotationCurationIndexer.class, 4, 1500, 1500, 2, 1, false),
 	DiseaseAnnotationIndexer("diseaseAnnotation", DiseaseAnnotationCurationIndexer.class, 1, 1500, 1500, 2, 1, false),
-	VariantSummaryIndexer("variantSummary", VariantSummaryCurationIndexer.class, 1, 3000, 1500, 8, 1, false),
-
-	GeneSearchResultCurationIndexer("geneSearchResult", GeneSearchResultCurationIndexer.class, 4, 1000, 1500, 4, 1, false),
-
+	
+	
 	;