StatPhysMLSimPlayground/pyproject.toml at main · Yuma-Ichikawa/StatPhysMLSimPlayground · GitHub

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[build-system]
requires = ["setuptools>=68", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "statphys-ml"
version = "0.1.0"
description = "Statistical mechanics simulation package for machine learning theory (Replica, Online Learning, DMFT)"
readme = "README.md"
requires-python = ">=3.10"
license = {file = "LICENSE.txt"}
authors = [{name = "Yuma Ichikawa", email = "yuma.ichikawa@a.riken.jp"}]
keywords = [
    "statistical mechanics",
    "machine learning",
    "replica method",
    "online learning",
    "teacher-student model",
    "high-dimensional statistics",
]
classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: BSD License",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Topic :: Scientific/Engineering :: Artificial Intelligence",
    "Topic :: Scientific/Engineering :: Physics",
]

# Core dependencies (minimal for theory computations)
dependencies = [
    "numpy>=1.24",
    "torch>=2.0",
    "scipy>=1.10",
    "tqdm>=4.65",
]

[project.optional-dependencies]
# Visualization dependencies
vis = [
    "matplotlib>=3.7",
    "seaborn>=0.12",
    "pandas>=2.0",
]
# Jupyter notebook support
notebook = [
    "jupyter>=1.0",
    "ipykernel>=6.0",
    "ipywidgets>=8.0",
]
# Testing (includes vis for full test coverage)
test = [
    "pytest>=7.0",
    "pytest-cov>=4.0",
    "matplotlib>=3.7",
    "seaborn>=0.12",
    "pandas>=2.0",
]
# Linting and type checking
lint = [
    "black>=23.0",
    "ruff>=0.1",
    "mypy>=1.0",
    "isort>=5.12",
]
# Development (test + lint + vis)
dev = [
    "statphys-ml[test,lint,vis]",
]
# Documentation
docs = [
    "sphinx>=6.0",
    "sphinx-rtd-theme>=1.0",
    "sphinx-autodoc-typehints>=1.23",
]
# All optional dependencies
all = [
    "statphys-ml[dev,docs,notebook]",
]

[tool.setuptools]
package-dir = {"" = "src"}

[tool.setuptools.packages.find]
where = ["src"]

[project.urls]
Homepage = "https://github.com/yuma-ichikawa/statphys-ml"
Documentation = "https://statphys-ml.readthedocs.io"
Repository = "https://github.com/yuma-ichikawa/statphys-ml"
Issues = "https://github.com/yuma-ichikawa/statphys-ml/issues"
Author-Website = "https://ichikawa-laboratory.com/"
Twitter = "https://x.com/yuma_1_or"

# Black configuration
[tool.black]
line-length = 100
target-version = ['py310', 'py311', 'py312']
include = '\.pyi?$'
exclude = '''
/(
    \.eggs
  | \.git
  | \.hg
  | \.mypy_cache
  | \.tox
  | \.venv
  | _build
  | buck-out
  | build
  | dist
)/
'''

# Ruff configuration
[tool.ruff]
line-length = 100
target-version = "py310"

[tool.ruff.lint]
select = ["E", "F", "W", "N", "D", "UP", "B", "C4", "SIM"]
ignore = [
    "D100", "D102", "D104", "D105", "D107",  # Missing docstrings
    "D200", "D205",  # One-line docstring formatting
    "D203", "D212", "D213",  # Docstring formatting
    "D400", "D401", "D415", "D417",  # Docstring content
    "N802", "N803", "N806", "N812",  # Naming conventions (allow math notation like W0, X, H)
    "E741",  # Ambiguous variable name (allow l for lambda)
    "E501",  # Line too long (handled by black)
    "SIM103", "SIM108",  # Simplify conditionals (allow explicit if-else)
    "B007",  # Loop control variable not used
]

# isort configuration
[tool.isort]
profile = "black"
line_length = 100
known_first_party = ["statphys"]

# mypy configuration
[tool.mypy]
python_version = "3.10"
warn_return_any = true
warn_unused_configs = true
ignore_missing_imports = true

# pytest configuration
[tool.pytest.ini_options]
testpaths = ["tests"]
python_files = ["test_*.py"]
addopts = "-v --tb=short"