Skip to content

Error installing DARTS #24

@desmodus1984

Description

@desmodus1984

Hi,

I plan to run rmats (which I installed with conda), and when I tried installing DARTS I got into an error:
conda install -c darts-comp-bio darts_dnn darts_bht
Collecting package metadata (current_repodata.json): / WARNING conda.models.version:get_matcher(556): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.7.1., but conda is ignoring the . and treating it as 1.7.1
done
Solving environment: unsuccessful initial attempt using frozen solve. Retrying with flexible solve.
Solving environment: unsuccessful attempt using repodata from current_repodata.json, retrying with next repodata source.
Collecting package metadata (repodata.json): - WARNING conda.models.version:get_matcher(556): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.8.0., but conda is ignoring the . and treating it as 1.8.0
WARNING conda.models.version:get_matcher(556): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.6.0., but conda is ignoring the . and treating it as 1.6.0
WARNING conda.models.version:get_matcher(556): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.9.0., but conda is ignoring the . and treating it as 1.9.0
done
Solving environment: unsuccessful initial attempt using frozen solve. Retrying with flexible solve.
Solving environment: |
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
failed

UnsatisfiableError: The following specifications were found
to be incompatible with the existing python installation in your environment:

Specifications:

  • darts_bht -> python=2.7
  • darts_dnn -> python=2.7

Your python: python=3.12

If python is on the left-most side of the chain, that's the version you've asked for.
When python appears to the right, that indicates that the thing on the left is somehow
not available for the python version you are constrained to. Note that conda will not
change your python version to a different minor version unless you explicitly specify
that.

The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

Package xz conflicts for:
python=3.12 -> xz[version='>=5.2.6,<6.0a0|>=5.4.6,<6.0a0|>=5.4.5,<6.0a0|>=5.4.2,<6.0a0']
darts_bht -> r-base[version='>=3.4.3'] -> xz[version='>=5.2.3,<6.0a0|>=5.2.4,<6.0.0a0|>=5.2.5,<6.0.0a0|>=5.2.6,<6.0a0|>=5.4.2,<6.0a0|>=5.2.5,<6.0a0|>=5.2.4,<6.0a0']

Package libzlib conflicts for:
python=3.12 -> libsqlite[version='>=3.46.0,<4.0a0'] -> libzlib[version='1.2.13|1.2.13|1.2.13|>=1.2.13,<2.0a0|>=1.2.11,<2.0.0a0',build='h166bdaf_4|hd590300_5|h4ab18f5_6']
python=3.12 -> libzlib[version='>=1.2.13,<2.0.0a0|>=1.3.1,<2.0a0']

Package libblas conflicts for:
darts_bht -> r-base[version='>=3.4.3'] -> libblas[version='>=3.8.0,<4.0a0|>=3.9.0,<4.0a0']
darts_dnn -> numpy -> libblas[version='>=3.8.0,<4.0a0|>=3.9.0,<4.0a0']

Package numpy conflicts for:
darts_dnn -> numpy
darts_dnn -> h5py -> numpy[version='1.10.|1.11.|1.12.|1.13.|>=1.14.6,<2.0a0|>=1.16.5,<2.0a0|>=1.17.5,<2.0a0|>=1.18.5,<2.0a0|>=1.19,<3|>=1.22.4,<2.0a0|>=1.26.4,<2.0a0|>=1.23.5,<2.0a0|>=1.26.2,<2.0a0|>=1.26.0,<2.0a0|>=1.21.6,<2.0a0|>=1.20.3,<2.0a0|>=1.23.4,<2.0a0|>=1.19.5,<2.0a0|>=1.21.4,<2.0a0|>=1.19.4,<2.0a0|>=1.16.6,<2.0a0|>=1.19.2,<2.0a0|>=1.9.3,<2.0a0|>=1.8|>=1.8,<1.14|>=1.21.5,<2.0a0|>=1.22.3,<2.0a0|>=1.21.2,<2.0a0|>=1.11.3,<2.0a0|<2.0a0|>=1.9.1|>=1.26.3,<2.0a0|>=1.15.4,<2.0a0|>=1.18.4,<2.0a0|>=1.18.1,<2.0a0|>=1.12.1,<2.0a0|>=1.11.|>=1.9.|>=1.23,<2.0a0|>=1.21,<2.0a0|>=1.16,<2.0a0|>=1.20.2,<2.0a0|>=1.13.3,<2.0a0|>=1.9|<1.25|<2.3|>=1.23.5,<1.28|>=1.22.4,<1.28|>=1.26.4,<1.28|>=1.26.3,<1.28|>=1.26.0,<1.28|>=1.21.6,<1.28|>=1.21.6,<1.27|>=1.23.5,<1.27|>=1.20.3,<1.27|>=1.21.6,<1.26|>=1.23.4,<1.26|>=1.20.3,<1.26|>=1.20.3,<1.25|>=1.21.6,<1.25|>=1.20.3,<1.23|>=1.21.6,<1.23|>=1.11|>=1.23.5,<1.29|>=1.26.4,<1.29|>=1.22.3,<1.29|>=1.22.4,<1.29|>=1.26.2,<1.28|>=1.21.5,<1.28|>=1.19.5,<1.27.0|>=1.23,<1.27.0|>=1.21,<1.27.0|>=1.21,<1.26.0|>=1.23,<1.26.0|>=1.19,<1.26.0|>=1.19,<1.25.0|>=1.21,<1.25.0|>=1.16,<1.23|>=1.21,<1.23|>=1.16.6,<1.23.0|>=1.21.2,<1.23.0|>=1.15.1,<2.0a0|>=1.3.0']The following specifications were found to be incompatible with your system:

  • feature:/linux-64::__glibc==2.35=0
  • feature:|@/linux-64::__glibc==2.35=0
  • darts_bht -> r-base[version='>=3.4.3'] -> __glibc[version='>=2.17,<3.0.a0']
  • darts_dnn -> numpy -> __glibc[version='>=2.17,<3.0.a0']

Your installed version is: 2.35

It took a long time to try to install, and it failed.

Let me know how to fix it, or if I should skip and run rmats without it.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions