Hello,
I'm running CLAM 1.2.1 and was able to install all dependencies but I'm getting this error when trying to annotate peaks:
Genome annotation loaded.
Intersecting peaks with genome annotation...
***** WARNING: File ./narrow_peak.fixed.combined.bed has inconsistent naming convention for record:
1 96447080 96447130 ENSG00000228502 1000 + 1.200 1.598e-13 3.994e-13 .