ACKnowledge/requirements.txt at master · WormBase/ACKnowledge · GitHub

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agr-curation-api-client==0.8.2
# aiohappyeyeballs==2.4.3  # May not be available on all PyPI mirrors
aiohttp==3.10.10
aiosignal==1.2.0
annotated-types==0.6.0
anyio==3.7.1
async-timeout==4.0.3
attrs==21.4.0
bcrypt==4.0.1
beautifulsoup4==4.12.3
blis==0.7.11
Brotli==1.0.9
cachetools==5.5.2
catalogue==2.0.10
certifi==2023.11.17
cffi==1.16.0
chardet==5.2.0
charset-normalizer==2.0.4
click==8.1.7
cloudpathlib==0.16.0
coloredlogs==15.0.1
confection==0.1.3
conllu==4.5.3
cryptography==41.0.5
cymem==2.0.8
dataclasses==0.6
datasets==2.19.1
dill==0.3.8
ecdsa==0.19.1
et-xmlfile==1.1.0
exceptiongroup==1.1.3
fabric==2.5.0
falcon==3.1.1
fastapi==0.116.1
filelock==3.13.1
frozenlist==1.4.0
fsspec==2023.10.0
gensim==3.8.3
google-api-core==2.25.1
google-api-python-client==2.179.0
google-auth==2.40.3
google-auth-httplib2==0.2.0
google-auth-oauthlib==1.2.2
googleapis-common-protos==1.70.0
grobid-client==0.8.5
gspread==6.2.1
h11==0.12.0
hf-xet==1.1.9
httpcore==0.15.0
httplib2==0.22.0
httpx==0.23.0
huggingface-hub==0.24.6
humanfriendly==10.0
idna==3.4
importlib-metadata==8.5.0
# inflate64==1.0.0  # May not be available on all PyPI mirrors
iniconfig==2.0.0
invoke==1.7.3
Jinja2==3.1.2
joblib==1.3.2
langcodes==3.3.0
lxml==4.9.4
MarkupSafe==2.1.3
mpmath==1.3.0
multidict==6.0.4
multiprocess==0.70.15
multivolumefile==0.2.3
murmurhash==1.0.10
networkx==3.1
nltk==3.6.3
numpy==1.19.5
oauthlib==3.3.1
openpyxl==3.1.2
optimum==1.6.0
packaging==23.2
pandas==1.3.5
paramiko==3.3.1
pdfminer.six==20201018
pluggy==1.3.0
preshed==3.0.9
proto-plus==1.26.1
protobuf==3.20.3
psutil==5.9.0
psycopg2-binary==2.9.9
# py7zr==0.20.6  # Requires pyzstd which needs gcc to compile
pyarrow==13.0.0
pyarrow-hotfix==0.7
pyasn1==0.4.8
pyasn1-modules==0.4.1
# pybcj==1.0.2  # May not be available on all PyPI mirrors
pycparser==2.21
# pycryptodomex==3.19.1  # May not be available on all PyPI mirrors
pydantic==2.5.1
pydantic-core==2.14.3
# pydevd-pycharm==251.25410.67  # Development tool, not needed in Docker
PyNaCl==1.5.0
pyparsing==3.1.4
PyPDF2==3.0.1
# pyppmd==1.1.0  # May not be available on all PyPI mirrors
pytest==7.4.3
python-dateutil==2.8.2
python-dotenv==1.0.1
python-jose==3.4.0
pytz==2021.3
PyYAML==6.0.2
# pyzstd==0.15.9  # May not be available on all PyPI mirrors
regex==2020.10.28
requests==2.31.0
requests-oauthlib==2.0.0
rfc3986==1.5.0
rsa==4.9.1
safetensors==0.4.0
scikit-learn==1.3.2
scipy==1.10.1
sent2vec-prebuilt==0.0.3
sentencepiece==0.2.0
six==1.16.0
smart-open==6.4.0
sniffio==1.3.0
sortedcontainers==2.4.0
soupsieve==2.5
spacy==3.7.2
spacy-legacy==3.0.12
spacy-loggers==1.0.5
srsly==2.4.8
starlette==0.44.0
sympy==1.12
tenacity==9.0.0
texttable==1.6.7
thinc==8.2.1
threadpoolctl==3.2.0
tokenizers==0.13.3
tomli==2.0.1
torch==2.1.1
tqdm==4.66.1
transformers==4.30.0
# triton==2.1.0  # GPU-specific package, may not be needed
typer==0.9.0
typing-extensions==4.9.0
tzdata==2023.3
uritemplate==4.1.1
urllib3==1.26.18
wasabi==1.1.2
wbtools==3.3.0
weasel==0.3.4
# xxhash==3.4.1  # May not be available on all PyPI mirrors
yarl==1.12.0
zipp==3.20.0