feat: domain-specific configuration templates via scilex init #48
Description
Description
Add a scilex init --template <domain> command that generates a pre-configured scilex.config.yml for common research domains: bioinformatics, machine-learning, clinical-medicine, computer-science, social-sciences. Templates include domain-appropriate API selections, citation thresholds, and quality settings. Also support scilex profile save <name> to persist a working config as a reusable template.
Justification
Every SciLEx project currently starts from a blank config. Domain defaults reduce setup time significantly: ML reviews need arXiv + Semantic Scholar with low citation thresholds (fast-moving field); clinical reviews need PubMed + Elsevier with higher thresholds. Pure UX improvement with no API changes.
Affected files
- new
scilex/templates/directory scilex/run_collection.py(newinitsubcommand)