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Plant Pigment Analyzer

pipeline_script.py

Usage: python pipeline_script.py <path to dataset directory> <path to result directory>

The script expects that files in the dataset directory follow the pattern PLANTID_Vein_PETALID_DATE and PLANTID_Spot_PETALID_DATE, and that the result directory has alreacy been created.

Setup and Dependencies

  • Before you start, install:
  • Use Git to clone this repository
  • Use Anaconda to install the package scikit-learn
  • Use Anaconda to create and activate a python3 environment for this project
  • Within that environment, use pip to install opencv
    • This project requires OpenCV 4.4+, and the developers have found the most consistent success with installing the pip package opencv-contrib-python