ERROR with MutationParser #75
Description
While running ShapeMapper2, I keep getting an error with the mutation parser. My reads are a bit longer, so Bowtie doesn't work, but STAR does a good job with a unique alignment rate over 90%.
But then it all crashes:
"more ERROR: Component "MutationParser_Modified" (RNA:EGFP_genome sample:Modified) failed, giving the following error message:
vector::_M_range_check: __n (which is 18446744073709551615) >= this->size() (which is 516)
Component "MutationParser_Modified" (RNA:EGFP_genome sample:Modified) status: failed (return code 1)"
The command:
"shapemapper --name EGFP --nproc 16 --dms --verbose --star-aligner --disable-soft-clipping --target EGFP_genome.fasta --modified --folder DMS --untreated --folder noDMS --output-aligned-reads --output-parsed-mutations --output-counted-mutations"
What could be the issiue?
Thanks!