diff --git a/README.md b/README.md index b345a0b..ea4096c 100644 --- a/README.md +++ b/README.md @@ -112,21 +112,6 @@ Once installed, you can import and use the Digest library in Python: >>> [seq[p:p+5] for p in window_minimizer(seq, k=5, w=11)] ['ACGTA', 'CGTAG', 'AGCTA', 'TAGCT', 'GCTGA', 'TTACA', 'TACAT', 'GTATG', 'GCAAG', 'TGATC', 'CGTAG', 'TAGTG', 'ATGCT'] ``` -## CLI -A basic cli can be found [here](https://github.com/BenLangmead/gester/tree/main) - -## Benchmark / Tests -```bash -cd build -meson configure -Dbuildtype=debug -meson compile -``` -This will set the build flage from release to debug allowing you to generate proper executables for benchmark/testing. The executables will be located in the build folder and can be run directly from there. You can look at the meson.build file for more details. - -## Contributing -Use clang format version 17. -run `ninja clang-format` before submitting a PR. - We have also implemented parallel execution in the python library: ``` >>> import timeit