From 3ecd379262efd9f1881b50c85aab2272dd4a2d74 Mon Sep 17 00:00:00 2001 From: Daniel Esposito Date: Mon, 8 Oct 2018 13:43:49 +1100 Subject: [PATCH] MaveDB API change Renamed `species_name` to `organism_name` --- R/rapimave.R | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/R/rapimave.R b/R/rapimave.R index d33ddfb..3b7e549 100644 --- a/R/rapimave.R +++ b/R/rapimave.R @@ -587,14 +587,14 @@ print.rapimaveRefmap <- function(obj) { new.genome <- function(data) { .data <- data expectedFields <- c( - "short_name","species_name","ensembl","refseq" + "short_name","organism_name","ensembl","refseq" ) if (!is.list(data) || !all(expectedFields %in% names(.data))) { stop("Illegal argument for new.genome()") } structure(list( getShortName=function() .data$short_name, - getSpecies=function() .data$species_name, + getSpecies=function() .data$organism_name, getXRefEnsembl=function() { if (!is.null(.data$ensembl)) { new.xref(.data$ensembl)