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Setup of soil heat conductivity calibration from monitoring data

Input variables:

  • Trees $tree: smrk, buk, modrin
  • Locations $loc: loc1, loc2, loc3
  • Scenarios $swc: low, mid, high
    Input data in form of .csv files containing temperature evolution for each tree type and locations has to be provided in a folowing format:
dataIN/  
├── buk  
│   ├── output_loc1_buk_subsoil.csv  
│   ├── output_loc1_buk_topsoil.csv  
│   ├── output_loc2_buk_subsoil.csv  
│   ├── output_loc2_buk_topsoil.csv  
│   ├── output_loc3_buk_subsoil.csv  
│   └── output_loc3_buk_topsoil.csv  
├── modrin  
│   ├── output_loc1_modrin_subsoil.csv  
│   ├── output_loc1_modrin_topsoil.csv  
│   ├── output_loc2_modrin_subsoil.csv  
│   ├── output_loc2_modrin_topsoil.csv  
│   ├── output_loc3_modrin_subsoil.csv  
│   └── output_loc3_modrin_topsoil.csv  
└── smrk  
    ├── output_loc1_smrk_subsoil.csv  
    ├── output_loc1_smrk_topsoil.csv  
    ├── output_loc2_smrk_subsoil.csv  
    ├── output_loc2_smrk_topsoil.csv  
    ├── output_loc3_smrk_subsoil.csv  
    └── output_loc3_smrk_topsoil.csv

User has two ways to obtain calibration results

Manual

  1. Prepare simulation input data for desired tree type and location
    ./prepData.sh tree loc
    • prepInputs tree loc
    • prepInitTemp tree loc
    • calcHeatCapacity tree loc
  2. Prepare DRUtES configurations for each soil moisture scenario
    ./prepSimConf.sh swc
  3. Perform model calibration
    python3 heatConductOpt.py tree loc swc
  4. Visualize simulated data
    python3 genPlotMulti.py tree loc swc
  5. Repeat step 2. - 4. for each scenario
  6. Clean configurations between each location
    ./cleanTree

Semi-Automatic

Executes model calibration for given tree type, soil moisture scenario and model complexity
./tree_sim.sh tree opt mod

  • opt:
    • low - all loc low swc only
    • mid - all loc mid swc only
    • high - all loc high swc only
    • all - all loc all swc
  • mod:
    • 1 - conduction only
    • 2 - conduction + convection
    • 3 - conduction + source
    • 4 - conduction + convection + source

Both ways should yield figures and simul.h5 file which contain soil conductivities.