Aborted (core dumped)

[marco91sol]

Hi,

i-adhore: /mnt/DATA/Software/i-ADHoRe/src/Profile.cpp:95: void Profile::createNodes(const std::set&, const std::vector&, std::vector<std::vector<Node*> >&, bool, bool) const: Assertion `geneX.isPairWith(geneY)' failed.

How can I solve that?

[bedroesb]

Hello @marco91sol, Could you describe the parameters you used to run the I-adhore and how you run I-Adhore (OS, device and docker or not) ?

[marco91sol]

blast_table=Orthologues.list

table_type= family
output_path= output
gap_size=15
alignment_method=gg2
gap_size=15
cluster_gap=20
q_value=0.05
prob_cutoff=0.001
anchor_points=3
level_2_only=true
number_of_threads=16
visualizeAlignment=false

I am using the following version i-ADHoRe v3.0.
It works on the testing dataset.

[PSB-mibel]

Given the error message, I would assume that the orthologs-table you provide as input is somehow wrong.
I think one of the first things to try is force reflectivity in the orthologous relations from the file: if gene X is orthologous with gene Y, then gene Y should be orthologous with gene X. Do both relations always exist within your input file?