From 7078f500213785bd9f7d0672c4ad6256f561f004 Mon Sep 17 00:00:00 2001 From: Steve Van Hooser Date: Wed, 25 Feb 2026 20:13:15 -0500 Subject: [PATCH 1/2] manual updates --- ndi_common/.matlab2markdown-ignore | 0 .../manual/{ => developer}/Document_Design.md | 0 .../manual/{ => developer}/NDI_Calculator_Manual.md | 0 .../docs/{ => NDI-matlab}/manual/developer/cloud.md | 0 .../{manuals => manual/developer}/documentTips.md | 0 .../developer}/implementingNDIQueries.md | 0 src/ndi/docs/NDI-matlab/mkdocs-start.yml | 12 ++++++++---- 7 files changed, 8 insertions(+), 4 deletions(-) delete mode 100644 ndi_common/.matlab2markdown-ignore rename src/ndi/docs/NDI-matlab/manual/{ => developer}/Document_Design.md (100%) rename src/ndi/docs/NDI-matlab/manual/{ => developer}/NDI_Calculator_Manual.md (100%) rename src/ndi/docs/{ => NDI-matlab}/manual/developer/cloud.md (100%) rename src/ndi/docs/NDI-matlab/{manuals => manual/developer}/documentTips.md (100%) rename src/ndi/docs/NDI-matlab/{manuals => manual/developer}/implementingNDIQueries.md (100%) diff --git a/ndi_common/.matlab2markdown-ignore b/ndi_common/.matlab2markdown-ignore deleted file mode 100644 index e69de29bb..000000000 diff --git a/src/ndi/docs/NDI-matlab/manual/Document_Design.md b/src/ndi/docs/NDI-matlab/manual/developer/Document_Design.md similarity index 100% rename from src/ndi/docs/NDI-matlab/manual/Document_Design.md rename to src/ndi/docs/NDI-matlab/manual/developer/Document_Design.md diff --git a/src/ndi/docs/NDI-matlab/manual/NDI_Calculator_Manual.md b/src/ndi/docs/NDI-matlab/manual/developer/NDI_Calculator_Manual.md similarity index 100% rename from src/ndi/docs/NDI-matlab/manual/NDI_Calculator_Manual.md rename to src/ndi/docs/NDI-matlab/manual/developer/NDI_Calculator_Manual.md diff --git a/src/ndi/docs/manual/developer/cloud.md b/src/ndi/docs/NDI-matlab/manual/developer/cloud.md similarity index 100% rename from src/ndi/docs/manual/developer/cloud.md rename to src/ndi/docs/NDI-matlab/manual/developer/cloud.md diff --git a/src/ndi/docs/NDI-matlab/manuals/documentTips.md b/src/ndi/docs/NDI-matlab/manual/developer/documentTips.md similarity index 100% rename from src/ndi/docs/NDI-matlab/manuals/documentTips.md rename to src/ndi/docs/NDI-matlab/manual/developer/documentTips.md diff --git a/src/ndi/docs/NDI-matlab/manuals/implementingNDIQueries.md b/src/ndi/docs/NDI-matlab/manual/developer/implementingNDIQueries.md similarity index 100% rename from src/ndi/docs/NDI-matlab/manuals/implementingNDIQueries.md rename to src/ndi/docs/NDI-matlab/manual/developer/implementingNDIQueries.md diff --git a/src/ndi/docs/NDI-matlab/mkdocs-start.yml b/src/ndi/docs/NDI-matlab/mkdocs-start.yml index 18eb7da87..b6b002f4b 100644 --- a/src/ndi/docs/NDI-matlab/mkdocs-start.yml +++ b/src/ndi/docs/NDI-matlab/mkdocs-start.yml @@ -43,10 +43,7 @@ nav: - 3.1 Newbie version of your first electrophysiology experiment with NDI: 'NDI-matlab/tutorials/analyzing_first_physiology_experiment_detailed/1_example_dataset.md' - 4 Datasets: - Francesconi_et_al_2025: 'NDI-matlab/tutorials/datasets/Francesconi_et_al_2025/1_getting_started.md' - - 5 Manual: - - Developer Manual: - - Cloud: 'manual/developer/cloud.md' - - 7 Writing your own apps and calculators: + - 7 Writing your own apps and calculators: - 7.2 Writing short calculations: 'NDI-matlab/tutorials/writing_own_app/2_ndi_calculators.md' - Planned: - 4. Case studies in reading data in NDI: 'NDI-matlab/tutorials/case_studies_reading_data.md' @@ -54,4 +51,11 @@ nav: - 6. Making your own analysis app that uses NDI: 'NDI-matlab/tutorials/analysis_app.md' - 7. Submitting your data to an archive: 'NDI-matlab/tutorials/archive.md' - 8. Search and analyze NDI databases on the web: 'NDI-matlab/tutorials/search_ndi_databases.md' + - Manual (in progress): + - User manual: + - Queries: 'NDI-matlab/manual/Queries.md' + - Developer Manual: + - Cloud: 'NDI-matlab/manual/developer/cloud.md' + - Calculators: 'NDI-matlab/manual/developer/NDI_Calculator_Manual.md' + - Documents: 'NDI-matlab/manual/developer/Document_Design.md' - Document reference: From 0101c2728388872a6cf03a03affdcb576d39ec57 Mon Sep 17 00:00:00 2001 From: Steve Van Hooser Date: Thu, 26 Feb 2026 19:33:31 -0500 Subject: [PATCH 2/2] fix errors in mkdocs-start.yml (indentations) --- src/ndi/docs/NDI-matlab/mkdocs-start.yml | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/src/ndi/docs/NDI-matlab/mkdocs-start.yml b/src/ndi/docs/NDI-matlab/mkdocs-start.yml index b6b002f4b..5473591fd 100644 --- a/src/ndi/docs/NDI-matlab/mkdocs-start.yml +++ b/src/ndi/docs/NDI-matlab/mkdocs-start.yml @@ -43,7 +43,7 @@ nav: - 3.1 Newbie version of your first electrophysiology experiment with NDI: 'NDI-matlab/tutorials/analyzing_first_physiology_experiment_detailed/1_example_dataset.md' - 4 Datasets: - Francesconi_et_al_2025: 'NDI-matlab/tutorials/datasets/Francesconi_et_al_2025/1_getting_started.md' - - 7 Writing your own apps and calculators: + - 7 Writing your own apps and calculators: - 7.2 Writing short calculations: 'NDI-matlab/tutorials/writing_own_app/2_ndi_calculators.md' - Planned: - 4. Case studies in reading data in NDI: 'NDI-matlab/tutorials/case_studies_reading_data.md' @@ -51,11 +51,11 @@ nav: - 6. Making your own analysis app that uses NDI: 'NDI-matlab/tutorials/analysis_app.md' - 7. Submitting your data to an archive: 'NDI-matlab/tutorials/archive.md' - 8. Search and analyze NDI databases on the web: 'NDI-matlab/tutorials/search_ndi_databases.md' - - Manual (in progress): - - User manual: - - Queries: 'NDI-matlab/manual/Queries.md' - - Developer Manual: - - Cloud: 'NDI-matlab/manual/developer/cloud.md' - - Calculators: 'NDI-matlab/manual/developer/NDI_Calculator_Manual.md' - - Documents: 'NDI-matlab/manual/developer/Document_Design.md' + - Manual (in progress): + - User manual: + - Queries: 'NDI-matlab/manual/Queries.md' + - Developer Manual: + - Cloud: 'NDI-matlab/manual/developer/cloud.md' + - Calculators: 'NDI-matlab/manual/developer/NDI_Calculator_Manual.md' + - Documents: 'NDI-matlab/manual/developer/Document_Design.md' - Document reference: