diff --git a/DESCRIPTION b/DESCRIPTION index f381b96..def567b 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -19,7 +19,7 @@ Description: This packages combines a set of utilities for acquiring and process License: MIT + file LICENSE Encoding: UTF-8 Roxygen: list(markdown = TRUE) -RoxygenNote: 7.3.2 +RoxygenNote: 7.3.3 Imports: arrow, censusapi, @@ -64,5 +64,7 @@ Suggests: knitr, qualtRics, rmarkdown, + testthat (>= 3.0.0), tidyverse VignetteBuilder: knitr +Config/testthat/edition: 3 diff --git a/R/get_business_patterns.R b/R/get_business_patterns.R index e8a01d8..8988c49 100644 --- a/R/get_business_patterns.R +++ b/R/get_business_patterns.R @@ -1,9 +1,73 @@ -#' Obtain County Business Patterns (CBP) Estimates per County +#' @importFrom magrittr %>% + +#' @title Obtain County Business Patterns (CBP) Estimates per County +#' +#' @param year The vintage of CBP data desired. Data are available from 1986, +#' though this function likely only supports more recent years (it it tested on 2022-vintage data only). +#' Default is 2022. +#' @param geo The level of geography of CBP data desired. Either "county" or "zipcode". Zipcode +#' level data only The ZIP Code Business Patterns (ZBP) dataset includes the number of establishments, +#' employment during the week of March 12th, first quarter and annual payroll for NAICS 00 (total for all sectors). +#' Additionally, the number of establishments (but not employment or payroll) are available by employment +#' size of the establishment for 2- through 6-digit NAICS. +#' @param naics_code_digits One of c(2, 3). Default is 2. NAICS codes range in +#' specificity; 2-digit codes describe the highest groupings of industries, +#' while six-digit codes are exceedingly detailed. There are 20 2-digit NAICS +#' codes and 196 3-digit codes. If more specific codes are desired, leave this +#' argument as NULL and supply the desired codes as the argument to `naics_codes`. +#' @param naics_codes A vector of NAICS codes to query. If NULL, the function will +#' query all available codes with the specified number of digits. If not NULL, +#' this argument overrides the `naics_code_digits` argument. +#' +#' @details +#' County Business Patterns (CBP) is an annual series that provides subnational +#' economic data for establishments with paid employees by industry and employment size. +#' This series includes the number of establishments, employment during the week of +#' March 12, first quarter payroll, and annual payroll. Industry classification of business +#' establishments in CBP is according to the North American Industry Classification System (NAICS) +#' https://www.census.gov/naics/ +#' +#' CBP data are useful for studying economic activity of small areas. Federal agencies +#' use the data to determine employee concentrations and trends by industry. +#' State and local government offices use the data to assess business changes, develop +#' fiscal policies, and plan future policies and programs. CBP data are used to benchmark +#' public and private sector statistical series, surveys, and databases between economic census years. +#' +#' While similar to LEHD Origin-Destination Employment Statistics (LODES) data in it's coverage of employment +#' statistics, CBP differs mainly due to its broader geographies (county vs. tract) and +#' focus on framing the statistics at an establishment/company level rather than at the individual/job +#' level found in LODES data. CBP also does not offer information on locations of the jobs in relation to +#' where the employee actually resides. #' -#' @param year The vintage of CBP data desired. Data are available from 1986, though this function likely only supports more recent years (it it tested on 2022-vintage data only). Default is 2022. -#' @param naics_code_digits One of c(2, 3). Default is 2. NAICS codes range in specificity; 2-digit codes describe the highest groupings of industries, while six-digit codes are exceedingly detailed. There are 20 2-digit NAICS codes and 196 3-digit codes. -#' @param naics_codes A vector of NAICS codes to query. If NULL, the function will query all available codes with the specified number of digits. If not NULL, this argument overrides the `naics_code_digits` argument. -#' @return A tibble with data on county-level employees, employers, and aggregate annual payrolls by industry and employer size +#' The series excludes data on self-employed individuals, employees of private households, +#' railroad employees, agricultural production employees, and most government employees. +#' A certain amount of undercoverage occurs in the universe, as the Census Bureau does +#' not create a multi-unit company structure in the Business Register for very small employers +#' (less than 10 employees) identified in the Economic Census. +#' +#' CBP covers most NAICS industries excluding Crop and Animal Production (NAICS 111,112); +#' Rail Transportation (NAICS 482); Postal Service (NAICS 491); Pension, Health, Welfare, +#' and Other Insurance Funds (NAICS 525110, 525120, 525190); Trusts, Estates, and Agency +#' Accounts (NAICS 525920); Offices of Notaries (NAICS 541120); Private Households (NAICS 814); +#' and Public Administration (NAICS 92) +#' +#' @return A tibble with data on county-level employees, employers, and aggregate +#' annual payrolls by industry and employer size +#' \describe{ +#' \item{year}{the year for which CBP data is pulled from} +#' \item{state}{A two-digit state identifier.} +#' \item{county}{A three-digit county identifier.} +#' \item{employees}{number of individual employees employed in that particular industry +#' and establishment size combination} +#' \item{employers}{number of establishments of each employment size} +#' \item{annual_payroll}{total annual payroll expenditures measured in $1,000's of USD} +#' \item{industry}{industry classification according to North American Industry Classification System. +#' Refer to details for additional information} +#' \item{employee_size_range_label}{range for the employment size of establishments included in each +#' given grouping} +#' \item{employee_size_range_code}{three-digit code used to categorize employment sizes} +#' \item{naics_code}{two to six-digit code used by the NAICS to categorize and sub-categorize industries} +#' } #' @export #' #' @examples @@ -17,16 +81,22 @@ #' naics_codes = c(221111, 221112)) #' } -get_business_patterns = function(year = 2022, naics_code_digits = 2, naics_codes = NULL) { +get_business_patterns = function(year = 2022, geo = "county", naics_code_digits = 2, naics_codes = NULL) { if (year < 1986) { stop("Year must be 1986 or later.") } + if (year > 2023) { stop("Most recent year for data is 2023.") } + if (! geo %in% c("county", "zipcode")) { stop("`geo` must be one of 'county' or 'zipcode'.") } if (! naics_code_digits %in% c(2, 3)) { stop("`naics_code_digits` must be one of c(2, 3). For more detailed codes, explicitly pass desired codes to the `naics_codes` parameter.") } naics_codes_metadata = censusapi::listCensusMetadata( - name = "cbp", - vintage = "2022", - type = "variables", - include_values = TRUE) + name = "cbp", + vintage = "2022", + type = "variables", + include_values = TRUE) %>% + #filter out codes 92 and 95 which do not appear to have data associated and + #don't appear on the census list of naics codes at + #https://www2.census.gov/programs-surveys/cbp/technical-documentation/reference/naics-descriptions/naics2017.txt + dplyr::filter(!stringr::str_starts(values_code, "92|95")) if (!is.null(naics_codes)) { naics_code_check = naics_codes_metadata %>% @@ -62,30 +132,32 @@ get_business_patterns = function(year = 2022, naics_code_digits = 2, naics_codes ~ tryCatch({ censusapi::getCensus( name = "cbp", - vintage = 2022, + vintage = year, vars = c( "EMP", + "YEAR", "ESTAB", "PAYANN", "EMPSZES", "NAICS2017_LABEL"), - region = "county:*", - NAICS2017 = .x)}, - error = function(e) { - message("Error in NAICS2017: ", .x) - return(tibble::tibble())})) %>% - dplyr::select( - state, - county, + region = paste0(geo, ":*"), + NAICS2017 = .x) %>% + dplyr::mutate(naics_code = .x)}, + error = function(e) { return(tibble::tibble()) })) %>% + dplyr::mutate( + # state, + # county, employees = EMP, employers = ESTAB, annual_payroll = PAYANN, employee_size_range = EMPSZES, - industry = NAICS2017_LABEL) %>% + industry = NAICS2017_LABEL, + naics_code) %>% dplyr::mutate( industry = industry %>% stringr::str_to_lower() %>% stringr::str_replace_all(c(" " = "_", ",|\\(|\\)|_for_all_sectors|and_" = "")), + year = year, ## this recoding is mapped from: https://www2.census.gov/programs-surveys/bds/technical-documentation/label_empszes.csv employee_size_range_label = dplyr::case_when( employee_size_range == "001" ~ "All establishments", @@ -137,7 +209,24 @@ get_business_patterns = function(year = 2022, naics_code_digits = 2, naics_codes stringr::str_extract(employee_size_range_label, "[0-9]{4}") %>% as.numeric >= 1000 ~ "1000+", TRUE ~ employee_size_range_label)) %>% dplyr::rename(employee_size_range_code = employee_size_range) %>% - dplyr::select(state, county, employees, employers, annual_payroll, industry, employee_size_range_label, employee_size_range_code) + { if (geo == "county") { + dplyr::select(., + year, state, county, employees, employers, annual_payroll, + industry, employee_size_range_label, employee_size_range_code, naics_code)} + else if (geo == "zipcode") { + dplyr::select(., + year, zip_code, employees, employers, annual_payroll, + industry, employee_size_range_label, employee_size_range_code, naics_code) } } + + high_missingness = cbp %>% + skimr::skim() %>% + dplyr::filter(complete_rate < .9) %>% + dplyr::pull(skim_variable) + + if (length(high_missingness) > 0) { + warning( + stringr::str_c("Variables with high missingness in County Business Patterns", ": ", + base::paste(high_missingness, collapse = ", "))) } return(cbp) } @@ -145,4 +234,4 @@ get_business_patterns = function(year = 2022, naics_code_digits = 2, naics_codes utils::globalVariables( c("EMP", "EMPSZES", "ESTAB", "NAICS2017_LABEL", "PAYANN", "annual_payroll", "employee_size_range", "employee_size_range_code", "employee_size_range_label", - "employees", "employers", "industry", "values_code")) + "employees", "employers", "industry", "values_code", "naics_code")) diff --git a/R/get_lodes.R b/R/get_lodes.R index e398069..75373c1 100644 --- a/R/get_lodes.R +++ b/R/get_lodes.R @@ -93,14 +93,72 @@ rename_lodes_variables = function(.df) { #' Get LEHD Origin-Destination Employment Statistics (LODES) data #' Returned data are from LODES Version 8, which is enumerated in 2020-vintage geometries. #' -#' @param lodes_type One of c("rac", "wac", "od"). "rac" = Residence Area Characteristics, where jobs are associated with employees' residences. "wac" = Workplace Area Characteristics, where jobs are associated with employees' workplaces. "od" = Origin-Destination data, where jobs are associated with both workers' residences and their workplaces. -#' @param jobs_type One of c("all", "primary"). Default is "all", which includes multiple jobs for workers with multiple jobs. "primary" includes only the highest-paying job per worker. +#' @param lodes_type One of c("rac", "wac", "od"). "rac" = Residence Area +#' Characteristics, where jobs are associated with employees' residences. +#' "wac" = Workplace Area Characteristics, where jobs are associated with +#' employees' workplaces. "od" = Origin-Destination data, where jobs are associated +#' with both workers' residences and their workplaces. +#' @param jobs_type One of c("all", "primary"). Default is "all", which includes +#' multiple jobs for workers with multiple jobs. "primary" includes only the +#' highest-paying job per worker. #' @param states A vector of state abbreviations. #' @param years A vector of years. -#' @param geography One of c("block", "block group", "tract", "county", "state"). Default is "tract". -#' @param state_part One of c("main", "aux"). Default is "main", which includes only workers who reside inside the state where they work. "aux" returns only workers who work in the specified state but live outside of that state. +#' @param geography One of c("block", "block group", "tract", "county", "state"). +#' Default is "tract". +#' @param state_part One of c("main", "aux"). Default is "main", which includes +#' only workers who reside inside the state where they work. "aux" returns +#' only workers who work in the specified state but live outside of that state. +#' +#' @details +#' The Longitudinal Employer-Household Dynamics (LEHD) data at the U.S. Census Bureau +#' is a quarterly database of linked employer-employee data covering over 95% of employment +#' in the United States. The LEHD data are generated by merging previously collected survey +#' and administrative data on jobs, businesses, and workers. +#' +#' LEHD Origin-Destination Employment Statistics (LODES)is a partially synthetic dataset +#' that describes geographic patterns of jobs by their employment locations and residential +#' locations as well as the connections between the two locations. The microdata link employee +#' and employer data by combining administrative state unemployment insurance wage records +#' with other administrative and survey data. The source data are aggregated and adjusted +#' to protect confidentiality. +#' +#' LODES data includes three datasets: +#' Residence Area Characteristics (RAC): +#' This file lists the total number of jobs by the census block where the employee lives. +#' +#' Workplace Area Characteristics (WAC): +#' This file lists the total number of jobs by the census block where the employee works. +#' +#' Origin-Destination (OD): +#' This file lists job totals by both the census block where the employee lives and the +#' census block where the employee works +#' +#' While similar to County Business Patterns (CBP) data in it's coverage of employment +#' statistics, LODES differs mainly due to its more granular geographies (tract vs. county) and +#' focus on framing the statistics at the individual/job level found in LODES data. +#' +#' @return A tibble with one record per geography per year per job type. Attributes +#' include total jobs and jobs by worker earnings, industry, and demographics; +#' the origin-destination results have more limited demographics compared to +#' the "wac" and "rac" results. +#' \describe{ +#' \item{year}{the year for which LODES data is pulled from} +#' \item{state}{A two-digit state identifier.} +#' \item{GEOID}{11 digit identifier denoted as either h_GEOID representing the employees' residence census block code or w_GEOID representing the employees' workplace census block code} +#' \item{job_type}{one of either 'all' jobs or only 'federal' jobs} +#' \item{total_jobs}{total number of jobs in a given tract} +#' \item{jobs_workers_age}{number of employees by given age range} +#' \item{jobs_earnings}{number of employees by given monthly earnings range} +#' \item{jobs_industry}{number of employees by given industry} +#' \item{jobs_workers_race}{number of employees by given race, inclusive of hispanic or latino; only available in 'wac' and 'rac' datasets} +#' \item{jobs_workers_ethnicity}{number of employess by hispanic or latino status, regardless of race; only available in 'wac' and 'rac' datasets} +#' \item{jobs_workers_educational_attainment}{number of employees by highest level of education attained; only available in 'wac' and 'rac' datasets} +#' \item{jobs_workers_sex}{number of employees by sex; only available in 'wac' and 'rac' datasets} +#' \item{jobs_firm_age}{number of employees by the age of employing firm; only available in 'wac' datasets} +#' \item{jobs_firm_size}{number of employees for a given range in employer size; only available in 'wac' datasets} +#' } +#' #' -#' @return A tibble with one record per geography per year per job type. Attributes include total jobs and jobs by worker earnings, industry, and demographics; the origin-destination results have more limited demographics compared to the "wac" and "rac" results. #' @export get_lodes = function( lodes_type, @@ -124,6 +182,12 @@ get_lodes = function( if (!state_part %in% c("main", "aux")) { stop("`state_part` must be one of 'main' or 'aux'.")} + + # if states == "all" then set states parameter as all 50 states plus DC + if ("all" %in% states) { + states <- c(state.abb, "DC") + } + years = years %>% as.numeric states = states %>% stringr::str_to_lower() @@ -147,6 +211,9 @@ form of multi-year job count comparison, we return by default federal job counts alongside those for all jobs; users can subtract federal job counts to create a temporally-consistent measure of total jobs.\n") } + +# list of state & year combinations that are missing data as of 12/2025. Sourced from +# here: https://lehd.ces.census.gov/doc/help/onthemap/LODESTechDoc.pdf state_years_missing = tibble::tribble( ~ year, ~ state, 2002, "AK", @@ -172,16 +239,15 @@ a temporally-consistent measure of total jobs.\n") } 2009, "DC", 2009, "MA", 2010, "MA", + 2017, "AK", 2018, "AK", 2019, "AK", - 2019, "MS", 2020, "AK", - 2020, "MS", 2021, "AK", - 2021, "MS", 2022, "AK", - 2022, "MS", - 2022, "MI") + 2022, "MI", + 2023, "AK", + 2023, "MI") state_years_supplied = expand.grid(years, states %>% stringr::str_to_upper()) %>% tibble::as_tibble() %>% @@ -202,7 +268,7 @@ Returning for only those states that are available for all specified years.\n") #https://lehd.ces.census.gov/doc/help/onthemap/LODESDataNote-FedEmp2015.pdf - ## geography identifying variables are variably-named across different geography + ## geography-identifying variables are variably named across different geography ## parameters; we standardize these to always be "GEOID" geoid_rename = c("_geocode|_tract|_bg|_county|_state" = "_GEOID") @@ -212,12 +278,7 @@ Returning for only those states that are available for all specified years.\n") jobs_type_all = "JT01" jobs_type_federal = "JT05" } - # states = "TX" - # years = 2022 - # agg_geo = "tract" - # lodes_type = "od" - - ## else this is noisy + ## supress messages/warnings else this is noisy suppressWarnings({suppressMessages({ lodes_all_jobs = lehdr::grab_lodes( state = states, @@ -239,6 +300,14 @@ Returning for only those states that are available for all specified years.\n") include federal jobs for 2010 and later. Records for pre-2010 federal jobs are listed as NA.\n") } + + ## if only years are pre-2010, returns jobs without federal job data + if (years %>% max < 2010) { + + return(lodes_all_jobs) + + } else { + suppressWarnings({suppressMessages({ lodes_federal_jobs = lehdr::grab_lodes( state = states, @@ -254,12 +323,9 @@ as NA.\n") } .fn = ~ stringr::str_replace_all(.x, geoid_rename)) %>% dplyr::select(-dplyr::matches("create")) })}) - if (lodes_type == "od") { - join_by = c("year", "w_GEOID", "h_GEOID") } else if (lodes_type == "rac") { - join_by = c("year", "h_GEOID") - } else if (lodes_type == "wac") { - join_by = c("year", "w_GEOID") - } + if (lodes_type == "od") { join_by = c("year", "w_GEOID", "h_GEOID") } + if (lodes_type == "rac") { join_by = c("year", "h_GEOID") } + if (lodes_type == "wac") { join_by = c("year", "w_GEOID") } ## both all jobs and all federal jobs lodes_all_nonfederal_jobs = lodes_all_jobs %>% @@ -290,6 +356,7 @@ as NA.\n") } rename_lodes_variables() return(lodes_all_nonfederal_jobs) + } } utils::globalVariables(c( diff --git a/man/get_business_patterns.Rd b/man/get_business_patterns.Rd index 3c2f7a5..6794aaa 100644 --- a/man/get_business_patterns.Rd +++ b/man/get_business_patterns.Rd @@ -4,21 +4,88 @@ \alias{get_business_patterns} \title{Obtain County Business Patterns (CBP) Estimates per County} \usage{ -get_business_patterns(year = 2022, naics_code_digits = 2, naics_codes = NULL) +get_business_patterns( + year = 2022, + geo = "county", + naics_code_digits = 2, + naics_codes = NULL +) } \arguments{ -\item{year}{The vintage of CBP data desired. Data are available from 1986, though this function likely only supports more recent years (it it tested on 2022-vintage data only). Default is 2022.} +\item{year}{The vintage of CBP data desired. Data are available from 1986, +though this function likely only supports more recent years (it it tested on 2022-vintage data only). +Default is 2022.} + +\item{geo}{The level of geography of CBP data desired. Either "county" or "zipcode". Zipcode +level data only The ZIP Code Business Patterns (ZBP) dataset includes the number of establishments, +employment during the week of March 12th, first quarter and annual payroll for NAICS 00 (total for all sectors). +Additionally, the number of establishments (but not employment or payroll) are available by employment +size of the establishment for 2- through 6-digit NAICS.} -\item{naics_code_digits}{One of c(2, 3). Default is 2. NAICS codes range in specificity; 2-digit codes describe the highest groupings of industries, while six-digit codes are exceedingly detailed. There are 20 2-digit NAICS codes and 196 3-digit codes.} +\item{naics_code_digits}{One of c(2, 3). Default is 2. NAICS codes range in +specificity; 2-digit codes describe the highest groupings of industries, +while six-digit codes are exceedingly detailed. There are 20 2-digit NAICS +codes and 196 3-digit codes. If more specific codes are desired, leave this +argument as NULL and supply the desired codes as the argument to \code{naics_codes}.} -\item{naics_codes}{A vector of NAICS codes to query. If NULL, the function will query all available codes with the specified number of digits. If not NULL, this argument overrides the \code{naics_code_digits} argument.} +\item{naics_codes}{A vector of NAICS codes to query. If NULL, the function will +query all available codes with the specified number of digits. If not NULL, +this argument overrides the \code{naics_code_digits} argument.} } \value{ -A tibble with data on county-level employees, employers, and aggregate annual payrolls by industry and employer size +A tibble with data on county-level employees, employers, and aggregate +annual payrolls by industry and employer size +\describe{ +\item{year}{the year for which CBP data is pulled from} +\item{state}{A two-digit state identifier.} +\item{county}{A three-digit county identifier.} +\item{employees}{number of individual employees employed in that particular industry +and establishment size combination} +\item{employers}{number of establishments of each employment size} +\item{annual_payroll}{total annual payroll expenditures measured in $1,000's of USD} +\item{industry}{industry classification according to North American Industry Classification System. +Refer to details for additional information} +\item{employee_size_range_label}{range for the employment size of establishments included in each +given grouping} +\item{employee_size_range_code}{three-digit code used to categorize employment sizes} +\item{naics_code}{two to six-digit code used by the NAICS to categorize and sub-categorize industries} +} } \description{ Obtain County Business Patterns (CBP) Estimates per County } +\details{ +County Business Patterns (CBP) is an annual series that provides subnational +economic data for establishments with paid employees by industry and employment size. +This series includes the number of establishments, employment during the week of +March 12, first quarter payroll, and annual payroll. Industry classification of business +establishments in CBP is according to the North American Industry Classification System (NAICS) +https://www.census.gov/naics/ + +CBP data are useful for studying economic activity of small areas. Federal agencies +use the data to determine employee concentrations and trends by industry. +State and local government offices use the data to assess business changes, develop +fiscal policies, and plan future policies and programs. CBP data are used to benchmark +public and private sector statistical series, surveys, and databases between economic census years. + +While similar to LEHD Origin-Destination Employment Statistics (LODES) data in it's coverage of employment +statistics, CBP differs mainly due to its broader geographies (county vs. tract) and +focus on framing the statistics at an establishment/company level rather than at the individual/job +level found in LODES data. CBP also does not offer information on locations of the jobs in relation to +where the employee actually resides. + +The series excludes data on self-employed individuals, employees of private households, +railroad employees, agricultural production employees, and most government employees. +A certain amount of undercoverage occurs in the universe, as the Census Bureau does +not create a multi-unit company structure in the Business Register for very small employers +(less than 10 employees) identified in the Economic Census. + +CBP covers most NAICS industries excluding Crop and Animal Production (NAICS 111,112); +Rail Transportation (NAICS 482); Postal Service (NAICS 491); Pension, Health, Welfare, +and Other Insurance Funds (NAICS 525110, 525120, 525190); Trusts, Estates, and Agency +Accounts (NAICS 525920); Offices of Notaries (NAICS 541120); Private Households (NAICS 814); +and Public Administration (NAICS 92) +} \examples{ \dontrun{ get_business_patterns( diff --git a/man/get_lodes.Rd b/man/get_lodes.Rd index a0427a8..bdd468a 100644 --- a/man/get_lodes.Rd +++ b/man/get_lodes.Rd @@ -15,22 +15,78 @@ get_lodes( ) } \arguments{ -\item{lodes_type}{One of c("rac", "wac", "od"). "rac" = Residence Area Characteristics, where jobs are associated with employees' residences. "wac" = Workplace Area Characteristics, where jobs are associated with employees' workplaces. "od" = Origin-Destination data, where jobs are associated with both workers' residences and their workplaces.} +\item{lodes_type}{One of c("rac", "wac", "od"). "rac" = Residence Area +Characteristics, where jobs are associated with employees' residences. +"wac" = Workplace Area Characteristics, where jobs are associated with +employees' workplaces. "od" = Origin-Destination data, where jobs are associated +with both workers' residences and their workplaces.} -\item{jobs_type}{One of c("all", "primary"). Default is "all", which includes multiple jobs for workers with multiple jobs. "primary" includes only the highest-paying job per worker.} +\item{jobs_type}{One of c("all", "primary"). Default is "all", which includes +multiple jobs for workers with multiple jobs. "primary" includes only the +highest-paying job per worker.} \item{states}{A vector of state abbreviations.} \item{years}{A vector of years.} -\item{geography}{One of c("block", "block group", "tract", "county", "state"). Default is "tract".} +\item{geography}{One of c("block", "block group", "tract", "county", "state"). +Default is "tract".} -\item{state_part}{One of c("main", "aux"). Default is "main", which includes only workers who reside inside the state where they work. "aux" returns only workers who work in the specified state but live outside of that state.} +\item{state_part}{One of c("main", "aux"). Default is "main", which includes +only workers who reside inside the state where they work. "aux" returns +only workers who work in the specified state but live outside of that state.} } \value{ -A tibble with one record per geography per year per job type. Attributes include total jobs and jobs by worker earnings, industry, and demographics; the origin-destination results have more limited demographics compared to the "wac" and "rac" results. +A tibble with one record per geography per year per job type. Attributes +include total jobs and jobs by worker earnings, industry, and demographics; +the origin-destination results have more limited demographics compared to +the "wac" and "rac" results. +\describe{ +\item{year}{the year for which LODES data is pulled from} +\item{state}{A two-digit state identifier.} +\item{GEOID}{11 digit identifier denoted as either h_GEOID representing the employees' residence census block code or w_GEOID representing the employees' workplace census block code} +\item{job_type}{one of either 'all' jobs or only 'federal' jobs} +\item{total_jobs}{total number of jobs in a given tract} +\item{jobs_workers_age}{number of employees by given age range} +\item{jobs_earnings}{number of employees by given monthly earnings range} +\item{jobs_industry}{number of employees by given industry} +\item{jobs_workers_race}{number of employees by given race, inclusive of hispanic or latino; only available in 'wac' and 'rac' datasets} +\item{jobs_workers_ethnicity}{number of employess by hispanic or latino status, regardless of race; only available in 'wac' and 'rac' datasets} +\item{jobs_workers_educational_attainment}{number of employees by highest level of education attained; only available in 'wac' and 'rac' datasets} +\item{jobs_workers_sex}{number of employees by sex; only available in 'wac' and 'rac' datasets} +\item{jobs_firm_age}{number of employees by the age of employing firm; only available in 'wac' datasets} +\item{jobs_firm_size}{number of employees for a given range in employer size; only available in 'wac' datasets} +} } \description{ Get LEHD Origin-Destination Employment Statistics (LODES) data Returned data are from LODES Version 8, which is enumerated in 2020-vintage geometries. } +\details{ +The Longitudinal Employer-Household Dynamics (LEHD) data at the U.S. Census Bureau +is a quarterly database of linked employer-employee data covering over 95\% of employment +in the United States. The LEHD data are generated by merging previously collected survey +and administrative data on jobs, businesses, and workers. + +LEHD Origin-Destination Employment Statistics (LODES)is a partially synthetic dataset +that describes geographic patterns of jobs by their employment locations and residential +locations as well as the connections between the two locations. The microdata link employee +and employer data by combining administrative state unemployment insurance wage records +with other administrative and survey data. The source data are aggregated and adjusted +to protect confidentiality. + +LODES data includes three datasets: +Residence Area Characteristics (RAC): +This file lists the total number of jobs by the census block where the employee lives. + +Workplace Area Characteristics (WAC): +This file lists the total number of jobs by the census block where the employee works. + +Origin-Destination (OD): +This file lists job totals by both the census block where the employee lives and the +census block where the employee works + +While similar to County Business Patterns (CBP) data in it's coverage of employment +statistics, LODES differs mainly due to its more granular geographies (tract vs. county) and +focus on framing the statistics at the individual/job level found in LODES data. +} diff --git a/renv.lock b/renv.lock index ee3ab54..ce91522 100644 --- a/renv.lock +++ b/renv.lock @@ -1,6189 +1,6372 @@ -{ - "R": { - "Version": "4.5.1", - "Repositories": [ - { - "Name": "CRAN", - "URL": "https://repo.miserver.it.umich.edu/cran" - } - ] - }, - "Packages": { - "BH": { - "Package": "BH", - "Version": "1.87.0-1", - "Source": "Repository", - "Type": "Package", - "Title": "Boost C++ Header Files", - "Date": "2024-12-17", - "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"John W.\", \"Emerson\", role = \"aut\"), person(\"Michael J.\", \"Kane\", role = \"aut\", comment = c(ORCID = \"0000-0003-1899-6662\")))", - "Description": "Boost provides free peer-reviewed portable C++ source libraries. 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This makes it easy to report results, create plots and consistently work with large numbers of models at once. Broom provides three verbs that each provide different types of information about a model. tidy() summarizes information about model components such as coefficients of a regression. glance() reports information about an entire model, such as goodness of fit measures like AIC and BIC. augment() adds information about individual observations to a dataset, such as fitted values or influence measures.", - "License": "MIT + file LICENSE", - "URL": "https://broom.tidymodels.org/, https://github.com/tidymodels/broom", - "BugReports": "https://github.com/tidymodels/broom/issues", - "Depends": [ - "R (>= 3.5)" - ], - "Imports": [ - "backports", - "cli", - "dplyr (>= 1.0.0)", - "generics (>= 0.0.2)", - "glue", - "lifecycle", - "purrr", - "rlang (>= 1.1.0)", - "stringr", - "tibble (>= 3.0.0)", - "tidyr (>= 1.0.0)" - ], - "Suggests": [ - "AER", - "AUC", - "bbmle", - "betareg (>= 3.2-1)", - "biglm", - "binGroup", - "boot", - "btergm (>= 1.10.6)", - "car (>= 3.1-2)", - "carData", - "caret", - "cluster", - 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"Config/testthat/edition": "3", - "NeedsCompilation": "no", - "Author": "David Robinson [aut], Alex Hayes [aut] (), Simon Couch [aut, cre] (), Posit Software, PBC [cph, fnd], Indrajeet Patil [ctb] (), Derek Chiu [ctb], Matthieu Gomez [ctb], Boris Demeshev [ctb], Dieter Menne [ctb], Benjamin Nutter [ctb], Luke Johnston [ctb], Ben Bolker [ctb], Francois Briatte [ctb], Jeffrey Arnold [ctb], Jonah Gabry [ctb], Luciano Selzer [ctb], Gavin Simpson [ctb], Jens Preussner [ctb], Jay Hesselberth [ctb], Hadley Wickham [ctb], Matthew Lincoln [ctb], Alessandro Gasparini [ctb], Lukasz Komsta [ctb], Frederick Novometsky [ctb], Wilson Freitas [ctb], Michelle Evans [ctb], Jason Cory Brunson [ctb], Simon Jackson [ctb], Ben Whalley [ctb], Karissa Whiting [ctb], Yves Rosseel [ctb], Michael Kuehn [ctb], Jorge Cimentada [ctb], Erle Holgersen [ctb], Karl Dunkle Werner [ctb] (), Ethan Christensen [ctb], Steven Pav [ctb], Paul PJ [ctb], Ben Schneider [ctb], Patrick Kennedy [ctb], Lily Medina [ctb], Brian Fannin [ctb], Jason Muhlenkamp [ctb], Matt Lehman [ctb], Bill Denney [ctb] (), Nic Crane [ctb], Andrew Bates [ctb], Vincent Arel-Bundock [ctb] (), Hideaki Hayashi [ctb], Luis Tobalina [ctb], Annie Wang [ctb], Wei Yang Tham [ctb], Clara Wang [ctb], Abby Smith [ctb] (), Jasper Cooper [ctb] (), E Auden Krauska [ctb] (), Alex Wang [ctb], Malcolm Barrett [ctb] (), Charles Gray [ctb] (), Jared Wilber [ctb], Vilmantas Gegzna [ctb] (), Eduard Szoecs [ctb], Frederik Aust [ctb] (), Angus Moore [ctb], Nick Williams [ctb], Marius Barth [ctb] (), Bruna Wundervald [ctb] (), Joyce Cahoon [ctb] (), Grant McDermott [ctb] (), Kevin Zarca [ctb], Shiro Kuriwaki [ctb] (), Lukas Wallrich [ctb] (), James Martherus [ctb] (), Chuliang Xiao [ctb] (), Joseph Larmarange [ctb], Max Kuhn [ctb], Michal Bojanowski [ctb], Hakon Malmedal [ctb], Clara Wang [ctb], Sergio Oller [ctb], Luke Sonnet [ctb], Jim Hester [ctb], Ben Schneider [ctb], Bernie Gray [ctb] (), Mara Averick [ctb], Aaron Jacobs [ctb], Andreas Bender [ctb], Sven Templer [ctb], Paul-Christian Buerkner [ctb], Matthew Kay [ctb], Erwan Le Pennec [ctb], Johan Junkka [ctb], Hao Zhu [ctb], Benjamin Soltoff [ctb], Zoe Wilkinson Saldana [ctb], Tyler Littlefield [ctb], Charles T. Gray [ctb], Shabbh E. Banks [ctb], Serina Robinson [ctb], Roger Bivand [ctb], Riinu Ots [ctb], Nicholas Williams [ctb], Nina Jakobsen [ctb], Michael Weylandt [ctb], Lisa Lendway [ctb], Karl Hailperin [ctb], Josue Rodriguez [ctb], Jenny Bryan [ctb], Chris Jarvis [ctb], Greg Macfarlane [ctb], Brian Mannakee [ctb], Drew Tyre [ctb], Shreyas Singh [ctb], Laurens Geffert [ctb], Hong Ooi [ctb], Henrik Bengtsson [ctb], Eduard Szocs [ctb], David Hugh-Jones [ctb], Matthieu Stigler [ctb], Hugo Tavares [ctb] (), R. Willem Vervoort [ctb], Brenton M. Wiernik [ctb], Josh Yamamoto [ctb], Jasme Lee [ctb], Taren Sanders [ctb] (), Ilaria Prosdocimi [ctb] (), Daniel D. 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Wilke [aut] (Original author, ), Thomas Lin Pedersen [aut] ()", - "Maintainer": "Hadley Wickham ", - "Repository": "CRAN" - }, - "janitor": { - "Package": "janitor", - "Version": "2.2.1", - "Source": "Repository", - "Title": "Simple Tools for Examining and Cleaning Dirty Data", - "Authors@R": "c(person(\"Sam\", \"Firke\", email = \"samuel.firke@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Bill\", \"Denney\", email = \"wdenney@humanpredictions.com\", role = \"ctb\"), person(\"Chris\", \"Haid\", email = \"chrishaid@gmail.com\", role = \"ctb\"), person(\"Ryan\", \"Knight\", email = \"ryangknight@gmail.com\", role = \"ctb\"), person(\"Malte\", \"Grosser\", email = \"malte.grosser@gmail.com\", role = \"ctb\"), person(\"Jonathan\", \"Zadra\", email = \"jonathan.zadra@sorensonimpact.com\", role = \"ctb\"))", - "Description": "The main janitor functions can: perfectly format data.frame column names; provide quick counts of variable combinations (i.e., frequency tables and crosstabs); and explore duplicate records. Other janitor functions nicely format the tabulation results. These tabulate-and-report functions approximate popular features of SPSS and Microsoft Excel. This package follows the principles of the \"tidyverse\" and works well with the pipe function %>%. janitor was built with beginning-to-intermediate R users in mind and is optimized for user-friendliness.", - "URL": "https://github.com/sfirke/janitor, https://sfirke.github.io/janitor/", - "BugReports": "https://github.com/sfirke/janitor/issues", - "Depends": [ - "R (>= 3.1.2)" - ], - "Imports": [ - "dplyr (>= 1.0.0)", - "hms", - "lifecycle", - "lubridate", - "magrittr", - "purrr", - "rlang", - "stringi", - "stringr", - "snakecase (>= 0.9.2)", - "tidyselect (>= 1.0.0)", - "tidyr (>= 0.7.0)" - ], - "License": "MIT + file LICENSE", - "RoxygenNote": "7.2.3", - "Suggests": [ - "dbplyr", - "knitr", - "rmarkdown", - "RSQLite", - "sf", - "testthat (>= 3.0.0)", - "tibble", - "tidygraph" - ], - "VignetteBuilder": "knitr", - "Encoding": "UTF-8", - "Config/testthat/edition": "3", - "NeedsCompilation": "no", - "Author": "Sam Firke [aut, cre], Bill Denney [ctb], Chris Haid [ctb], Ryan Knight [ctb], Malte Grosser [ctb], Jonathan Zadra [ctb]", - "Maintainer": "Sam Firke ", - "Repository": "CRAN" - }, - "jquerylib": { - "Package": "jquerylib", - "Version": "0.1.4", - "Source": "Repository", - "Title": "Obtain 'jQuery' as an HTML Dependency Object", - "Authors@R": "c( person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"carson@rstudio.com\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@rstudio.com\"), person(family = \"RStudio\", role = \"cph\"), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/lib/jquery-AUTHORS.txt\") )", - "Description": "Obtain any major version of 'jQuery' () and use it in any webpage generated by 'htmltools' (e.g. 'shiny', 'htmlwidgets', and 'rmarkdown'). Most R users don't need to use this package directly, but other R packages (e.g. 'shiny', 'rmarkdown', etc.) depend on this package to avoid bundling redundant copies of 'jQuery'.", - "License": "MIT + file LICENSE", - "Encoding": "UTF-8", - "Config/testthat/edition": "3", - "RoxygenNote": "7.0.2", - "Imports": [ - "htmltools" - ], - "Suggests": [ - "testthat" - ], - "NeedsCompilation": "no", - "Author": "Carson Sievert [aut, cre] (), Joe Cheng [aut], RStudio [cph], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/lib/jquery-AUTHORS.txt)", - "Maintainer": "Carson Sievert ", - "Repository": "CRAN" - }, - "jsonlite": { - "Package": "jsonlite", - "Version": "2.0.0", - "Source": "Repository", - "Title": "A Simple and Robust JSON Parser and Generator for R", - "License": "MIT + file LICENSE", - "Depends": [ - "methods" - ], - "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Duncan\", \"Temple Lang\", role = \"ctb\"), person(\"Lloyd\", \"Hilaiel\", role = \"cph\", comment=\"author of bundled libyajl\"))", - "URL": "https://jeroen.r-universe.dev/jsonlite https://arxiv.org/abs/1403.2805", - "BugReports": "https://github.com/jeroen/jsonlite/issues", - "Maintainer": "Jeroen Ooms ", - "VignetteBuilder": "knitr, R.rsp", - "Description": "A reasonably fast JSON parser and generator, optimized for statistical data and the web. Offers simple, flexible tools for working with JSON in R, and is particularly powerful for building pipelines and interacting with a web API. The implementation is based on the mapping described in the vignette (Ooms, 2014). In addition to converting JSON data from/to R objects, 'jsonlite' contains functions to stream, validate, and prettify JSON data. The unit tests included with the package verify that all edge cases are encoded and decoded consistently for use with dynamic data in systems and applications.", - "Suggests": [ - "httr", - "vctrs", - "testthat", - "knitr", - "rmarkdown", - "R.rsp", - "sf" - ], - "RoxygenNote": "7.3.2", - "Encoding": "UTF-8", - "NeedsCompilation": "yes", - "Author": "Jeroen Ooms [aut, cre] (), Duncan Temple Lang [ctb], Lloyd Hilaiel [cph] (author of bundled libyajl)", - "Repository": "CRAN" - }, - "knitr": { - "Package": "knitr", - "Version": "1.50", - "Source": "Repository", - "Type": "Package", - "Title": "A General-Purpose Package for Dynamic Report Generation in R", - "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Abhraneel\", \"Sarma\", role = \"ctb\"), person(\"Adam\", \"Vogt\", role = \"ctb\"), person(\"Alastair\", \"Andrew\", role = \"ctb\"), person(\"Alex\", \"Zvoleff\", role = \"ctb\"), person(\"Amar\", \"Al-Zubaidi\", role = \"ctb\"), person(\"Andre\", \"Simon\", role = \"ctb\", comment = \"the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de\"), person(\"Aron\", \"Atkins\", role = \"ctb\"), person(\"Aaron\", \"Wolen\", role = \"ctb\"), person(\"Ashley\", \"Manton\", role = \"ctb\"), person(\"Atsushi\", \"Yasumoto\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8335-495X\")), person(\"Ben\", \"Baumer\", role = \"ctb\"), person(\"Brian\", \"Diggs\", role = \"ctb\"), person(\"Brian\", \"Zhang\", role = \"ctb\"), person(\"Bulat\", \"Yapparov\", role = \"ctb\"), person(\"Cassio\", \"Pereira\", role = \"ctb\"), person(\"Christophe\", \"Dervieux\", role = \"ctb\"), person(\"David\", \"Hall\", role = \"ctb\"), person(\"David\", \"Hugh-Jones\", role = \"ctb\"), person(\"David\", \"Robinson\", role = \"ctb\"), person(\"Doug\", \"Hemken\", role = \"ctb\"), person(\"Duncan\", \"Murdoch\", role = \"ctb\"), person(\"Elio\", \"Campitelli\", role = \"ctb\"), person(\"Ellis\", \"Hughes\", role = \"ctb\"), person(\"Emily\", \"Riederer\", role = \"ctb\"), person(\"Fabian\", \"Hirschmann\", role = \"ctb\"), person(\"Fitch\", \"Simeon\", role = \"ctb\"), person(\"Forest\", \"Fang\", role = \"ctb\"), person(c(\"Frank\", \"E\", \"Harrell\", \"Jr\"), role = \"ctb\", comment = \"the Sweavel package at inst/misc/Sweavel.sty\"), person(\"Garrick\", \"Aden-Buie\", role = \"ctb\"), person(\"Gregoire\", \"Detrez\", role = \"ctb\"), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Hao\", \"Zhu\", role = \"ctb\"), person(\"Heewon\", \"Jeon\", role = \"ctb\"), person(\"Henrik\", \"Bengtsson\", role = \"ctb\"), person(\"Hiroaki\", \"Yutani\", role = \"ctb\"), person(\"Ian\", \"Lyttle\", role = \"ctb\"), person(\"Hodges\", \"Daniel\", role = \"ctb\"), person(\"Jacob\", \"Bien\", role = \"ctb\"), person(\"Jake\", \"Burkhead\", role = \"ctb\"), person(\"James\", \"Manton\", role = \"ctb\"), person(\"Jared\", \"Lander\", role = \"ctb\"), person(\"Jason\", \"Punyon\", role = \"ctb\"), person(\"Javier\", \"Luraschi\", role = \"ctb\"), person(\"Jeff\", \"Arnold\", role = \"ctb\"), person(\"Jenny\", \"Bryan\", role = \"ctb\"), person(\"Jeremy\", \"Ashkenas\", role = c(\"ctb\", \"cph\"), comment = \"the CSS file at inst/misc/docco-classic.css\"), person(\"Jeremy\", \"Stephens\", role = \"ctb\"), person(\"Jim\", \"Hester\", role = \"ctb\"), person(\"Joe\", \"Cheng\", role = \"ctb\"), person(\"Johannes\", \"Ranke\", role = \"ctb\"), person(\"John\", \"Honaker\", role = \"ctb\"), person(\"John\", \"Muschelli\", role = \"ctb\"), person(\"Jonathan\", \"Keane\", role = \"ctb\"), person(\"JJ\", \"Allaire\", role = \"ctb\"), person(\"Johan\", \"Toloe\", role = \"ctb\"), person(\"Jonathan\", \"Sidi\", role = \"ctb\"), person(\"Joseph\", \"Larmarange\", role = \"ctb\"), person(\"Julien\", \"Barnier\", role = \"ctb\"), person(\"Kaiyin\", \"Zhong\", role = \"ctb\"), person(\"Kamil\", \"Slowikowski\", role = \"ctb\"), person(\"Karl\", \"Forner\", role = \"ctb\"), person(c(\"Kevin\", \"K.\"), \"Smith\", role = \"ctb\"), person(\"Kirill\", \"Mueller\", role = \"ctb\"), person(\"Kohske\", \"Takahashi\", role = \"ctb\"), person(\"Lorenz\", \"Walthert\", role = \"ctb\"), person(\"Lucas\", \"Gallindo\", role = \"ctb\"), person(\"Marius\", \"Hofert\", role = \"ctb\"), person(\"Martin\", \"Modrák\", role = \"ctb\"), person(\"Michael\", \"Chirico\", role = \"ctb\"), person(\"Michael\", \"Friendly\", role = \"ctb\"), person(\"Michal\", \"Bojanowski\", role = \"ctb\"), person(\"Michel\", \"Kuhlmann\", role = \"ctb\"), person(\"Miller\", \"Patrick\", role = \"ctb\"), person(\"Nacho\", \"Caballero\", role = \"ctb\"), person(\"Nick\", \"Salkowski\", role = \"ctb\"), person(\"Niels Richard\", \"Hansen\", role = \"ctb\"), person(\"Noam\", \"Ross\", role = \"ctb\"), person(\"Obada\", \"Mahdi\", role = \"ctb\"), person(\"Pavel N.\", \"Krivitsky\", role = \"ctb\", comment=c(ORCID = \"0000-0002-9101-3362\")), person(\"Pedro\", \"Faria\", role = \"ctb\"), person(\"Qiang\", \"Li\", role = \"ctb\"), person(\"Ramnath\", \"Vaidyanathan\", role = \"ctb\"), person(\"Richard\", \"Cotton\", role = \"ctb\"), person(\"Robert\", \"Krzyzanowski\", role = \"ctb\"), person(\"Rodrigo\", \"Copetti\", role = \"ctb\"), person(\"Romain\", \"Francois\", role = \"ctb\"), person(\"Ruaridh\", \"Williamson\", role = \"ctb\"), person(\"Sagiru\", \"Mati\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1413-3974\")), person(\"Scott\", \"Kostyshak\", role = \"ctb\"), person(\"Sebastian\", \"Meyer\", role = \"ctb\"), person(\"Sietse\", \"Brouwer\", role = \"ctb\"), person(c(\"Simon\", \"de\"), \"Bernard\", role = \"ctb\"), person(\"Sylvain\", \"Rousseau\", role = \"ctb\"), person(\"Taiyun\", \"Wei\", role = \"ctb\"), person(\"Thibaut\", \"Assus\", role = \"ctb\"), person(\"Thibaut\", \"Lamadon\", role = \"ctb\"), person(\"Thomas\", \"Leeper\", role = \"ctb\"), person(\"Tim\", \"Mastny\", role = \"ctb\"), person(\"Tom\", \"Torsney-Weir\", role = \"ctb\"), person(\"Trevor\", \"Davis\", role = \"ctb\"), person(\"Viktoras\", \"Veitas\", role = \"ctb\"), person(\"Weicheng\", \"Zhu\", role = \"ctb\"), person(\"Wush\", \"Wu\", role = \"ctb\"), person(\"Zachary\", \"Foster\", role = \"ctb\"), person(\"Zhian N.\", \"Kamvar\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1458-7108\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "Provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.", - "Depends": [ - "R (>= 3.6.0)" - ], - "Imports": [ - "evaluate (>= 0.15)", - "highr (>= 0.11)", - "methods", - "tools", - "xfun (>= 0.51)", - "yaml (>= 2.1.19)" - ], - "Suggests": [ - "bslib", - "codetools", - "DBI (>= 0.4-1)", - "digest", - "formatR", - "gifski", - "gridSVG", - "htmlwidgets (>= 0.7)", - "jpeg", - "JuliaCall (>= 0.11.1)", - "magick", - "litedown", - "markdown (>= 1.3)", - "png", - "ragg", - "reticulate (>= 1.4)", - "rgl (>= 0.95.1201)", - "rlang", - "rmarkdown", - "sass", - "showtext", - "styler (>= 1.2.0)", - "targets (>= 0.6.0)", - "testit", - "tibble", - "tikzDevice (>= 0.10)", - "tinytex (>= 0.56)", - "webshot", - "rstudioapi", - "svglite" - ], - "License": "GPL", - "URL": "https://yihui.org/knitr/", - "BugReports": "https://github.com/yihui/knitr/issues", - "Encoding": "UTF-8", - "VignetteBuilder": "litedown, knitr", - "SystemRequirements": "Package vignettes based on R Markdown v2 or reStructuredText require Pandoc (http://pandoc.org). The function rst2pdf() requires rst2pdf (https://github.com/rst2pdf/rst2pdf).", - "Collate": "'block.R' 'cache.R' 'citation.R' 'hooks-html.R' 'plot.R' 'utils.R' 'defaults.R' 'concordance.R' 'engine.R' 'highlight.R' 'themes.R' 'header.R' 'hooks-asciidoc.R' 'hooks-chunk.R' 'hooks-extra.R' 'hooks-latex.R' 'hooks-md.R' 'hooks-rst.R' 'hooks-textile.R' 'hooks.R' 'output.R' 'package.R' 'pandoc.R' 'params.R' 'parser.R' 'pattern.R' 'rocco.R' 'spin.R' 'table.R' 'template.R' 'utils-conversion.R' 'utils-rd2html.R' 'utils-string.R' 'utils-sweave.R' 'utils-upload.R' 'utils-vignettes.R' 'zzz.R'", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Yihui Xie [aut, cre] (, https://yihui.org), Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Amar Al-Zubaidi [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto [ctb] (), Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Bulat Yapparov [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hall [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Ellis Hughes [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jacob Bien [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Lorenz Walthert [ctb], Lucas Gallindo [ctb], Marius Hofert [ctb], Martin Modrák [ctb], Michael Chirico [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Miller Patrick [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Niels Richard Hansen [ctb], Noam Ross [ctb], Obada Mahdi [ctb], Pavel N. Krivitsky [ctb] (), Pedro Faria [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Rodrigo Copetti [ctb], Romain Francois [ctb], Ruaridh Williamson [ctb], Sagiru Mati [ctb] (), Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Sylvain Rousseau [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tim Mastny [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb], Zhian N. Kamvar [ctb] (), Posit Software, PBC [cph, fnd]", - "Maintainer": "Yihui Xie ", - "Repository": "CRAN" - }, - "labeling": { - "Package": "labeling", - "Version": "0.4.3", - "Source": "Repository", - "Type": "Package", - "Title": "Axis Labeling", - "Date": "2023-08-29", - "Author": "Justin Talbot,", - "Maintainer": "Nuno Sempere ", - "Description": "Functions which provide a range of axis labeling algorithms.", - "License": "MIT + file LICENSE | Unlimited", - "Collate": "'labeling.R'", - "NeedsCompilation": "no", - "Imports": [ - "stats", - "graphics" - ], - "Repository": "CRAN" - }, - "later": { - "Package": "later", - "Version": "1.4.2", - "Source": "Repository", - "Type": "Package", - "Title": "Utilities for Scheduling Functions to Execute Later with Event Loops", - "Authors@R": "c( person(\"Winston\", \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@posit.co\"), person(\"Joe\", \"Cheng\", role = c(\"aut\"), email = \"joe@posit.co\"), person(\"Charlie\", \"Gao\", role = c(\"aut\"), email = \"charlie.gao@shikokuchuo.net\", comment = c(ORCID = \"0000-0002-0750-061X\")), person(family = \"Posit Software, PBC\", role = \"cph\"), person(\"Marcus\", \"Geelnard\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\"), person(\"Evan\", \"Nemerson\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\") )", - "Description": "Executes arbitrary R or C functions some time after the current time, after the R execution stack has emptied. The functions are scheduled in an event loop.", - "URL": "https://r-lib.github.io/later/, https://github.com/r-lib/later", - "BugReports": "https://github.com/r-lib/later/issues", - "License": "MIT + file LICENSE", - "Imports": [ - "Rcpp (>= 0.12.9)", - "rlang" - ], - "LinkingTo": [ - "Rcpp" - ], - "RoxygenNote": "7.3.2", - "Suggests": [ - "knitr", - "nanonext", - "R6", - "rmarkdown", - "testthat (>= 2.1.0)" - ], - "VignetteBuilder": "knitr", - "Encoding": "UTF-8", - "NeedsCompilation": "yes", - "Author": "Winston Chang [aut, cre], Joe Cheng [aut], Charlie Gao [aut] (), Posit Software, PBC [cph], Marcus Geelnard [ctb, cph] (TinyCThread library, https://tinycthread.github.io/), Evan Nemerson [ctb, cph] (TinyCThread library, https://tinycthread.github.io/)", - "Maintainer": "Winston Chang ", - "Repository": "CRAN" - }, - "lattice": { - "Package": "lattice", - "Version": "0.22-7", - "Source": "Repository", - "Date": "2025-03-31", - "Priority": "recommended", - "Title": "Trellis Graphics for R", - "Authors@R": "c(person(\"Deepayan\", \"Sarkar\", role = c(\"aut\", \"cre\"), email = \"deepayan.sarkar@r-project.org\", comment = c(ORCID = \"0000-0003-4107-1553\")), person(\"Felix\", \"Andrews\", role = \"ctb\"), person(\"Kevin\", \"Wright\", role = \"ctb\", comment = \"documentation\"), person(\"Neil\", \"Klepeis\", role = \"ctb\"), person(\"Johan\", \"Larsson\", role = \"ctb\", comment = \"miscellaneous improvements\"), person(\"Zhijian (Jason)\", \"Wen\", role = \"cph\", comment = \"filled contour code\"), person(\"Paul\", \"Murrell\", role = \"ctb\", email = \"paul@stat.auckland.ac.nz\"), person(\"Stefan\", \"Eng\", role = \"ctb\", comment = \"violin plot improvements\"), person(\"Achim\", \"Zeileis\", role = \"ctb\", comment = \"modern colors\"), person(\"Alexandre\", \"Courtiol\", role = \"ctb\", comment = \"generics for larrows, lpolygon, lrect and lsegments\") )", - "Description": "A powerful and elegant high-level data visualization system inspired by Trellis graphics, with an emphasis on multivariate data. 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The package also contains functions for visualizing segregation patterns.", - "License": "MIT + file LICENSE", - "Depends": [ - "R (>= 3.5.0)" - ], - "Imports": [ - "data.table", - "checkmate", - "Rcpp", - "RcppProgress" - ], - "Encoding": "UTF-8", - "LazyData": "true", - "Suggests": [ - "testthat", - "covr", - "knitr", - "rmarkdown", - "dplyr", - "ggplot2", - "scales", - "tidycensus", - "tigris", - "rrapply", - "dendextend", - "patchwork" - ], - "URL": "https://elbersb.github.io/segregation/", - "BugReports": "https://github.com/elbersb/segregation/issues", - "RoxygenNote": "7.2.3", - "VignetteBuilder": "knitr", - "SystemRequirements": "C++17", - "LinkingTo": [ - "Rcpp", - "RcppProgress" - ], - "NeedsCompilation": "yes", - "Author": "Benjamin Elbers [aut, cre] ()", - "Maintainer": "Benjamin Elbers ", - "Repository": "CRAN" - }, - "selectr": { - "Package": "selectr", - "Version": "0.4-2", - "Source": "Repository", - "Type": "Package", - "Title": "Translate CSS Selectors to XPath Expressions", - "Date": "2019-11-20", - "Authors@R": "c(person(\"Simon\", \"Potter\", role = c(\"aut\", \"trl\", \"cre\"), email = \"simon@sjp.co.nz\"), person(\"Simon\", \"Sapin\", role = \"aut\"), person(\"Ian\", \"Bicking\", role = \"aut\"))", - "License": "BSD_3_clause + file LICENCE", - "Depends": [ - "R (>= 3.0)" - ], - "Imports": [ - "methods", - "stringr", - "R6" - ], - "Suggests": [ - "testthat", - "XML", - "xml2" - ], - "URL": "https://sjp.co.nz/projects/selectr", - "BugReports": "https://github.com/sjp/selectr/issues", - "Description": "Translates a CSS3 selector into an equivalent XPath expression. This allows us to use CSS selectors when working with the XML package as it can only evaluate XPath expressions. Also provided are convenience functions useful for using CSS selectors on XML nodes. This package is a port of the Python package 'cssselect' ().", - "NeedsCompilation": "no", - "Author": "Simon Potter [aut, trl, cre], Simon Sapin [aut], Ian Bicking [aut]", - "Maintainer": "Simon Potter ", - "Repository": "CRAN" - }, - "sf": { - "Package": "sf", - "Version": "1.0-21", - "Source": "Repository", - "Title": "Simple Features for R", - "Authors@R": "c(person(given = \"Edzer\", family = \"Pebesma\", role = c(\"aut\", \"cre\"), email = \"edzer.pebesma@uni-muenster.de\", comment = c(ORCID = \"0000-0001-8049-7069\")), person(given = \"Roger\", family = \"Bivand\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2392-6140\")), person(given = \"Etienne\", family = \"Racine\", role = \"ctb\"), person(given = \"Michael\", family = \"Sumner\", role = \"ctb\"), person(given = \"Ian\", family = \"Cook\", role = \"ctb\"), person(given = \"Tim\", family = \"Keitt\", role = \"ctb\"), person(given = \"Robin\", family = \"Lovelace\", role = \"ctb\"), person(given = \"Hadley\", family = \"Wickham\", role = \"ctb\"), person(given = \"Jeroen\", family = \"Ooms\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(given = \"Kirill\", family = \"M\\u00fcller\", role = \"ctb\"), person(given = \"Thomas Lin\", family = \"Pedersen\", role = \"ctb\"), person(given = \"Dan\", family = \"Baston\", role = \"ctb\"), person(given = \"Dewey\", family = \"Dunnington\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9415-4582\")) )", - "Description": "Support for simple feature access, a standardized way to encode and analyze spatial vector data. Binds to 'GDAL' for reading and writing data, to 'GEOS' for geometrical operations, and to 'PROJ' for projection conversions and datum transformations. Uses by default the 's2' package for geometry operations on geodetic (long/lat degree) coordinates.", - "License": "GPL-2 | MIT + file LICENSE", - "URL": "https://r-spatial.github.io/sf/, https://github.com/r-spatial/sf", - "BugReports": "https://github.com/r-spatial/sf/issues", - "Depends": [ - "methods", - "R (>= 3.3.0)" - ], - "Imports": [ - "classInt (>= 0.4-1)", - "DBI (>= 0.8)", - "graphics", - "grDevices", - "grid", - "magrittr", - "s2 (>= 1.1.0)", - "stats", - "tools", - "units (>= 0.7-0)", - "utils" - ], - "Suggests": [ - "blob", - "nanoarrow", - "covr", - "dplyr (>= 1.0.0)", - "ggplot2", - "knitr", - "lwgeom (>= 0.2-14)", - "maps", - "mapview", - "Matrix", - "microbenchmark", - "odbc", - "pbapply", - "pillar", - "pool", - "raster", - "rlang", - "rmarkdown", - "RPostgres (>= 1.1.0)", - "RPostgreSQL", - "RSQLite", - "sp (>= 1.2-4)", - "spatstat (>= 2.0-1)", - "spatstat.geom", - "spatstat.random", - "spatstat.linnet", - "spatstat.utils", - "stars (>= 0.6-0)", - "terra", - "testthat (>= 3.0.0)", - "tibble (>= 1.4.1)", - "tidyr (>= 1.2.0)", - "tidyselect (>= 1.0.0)", - "tmap (>= 2.0)", - "vctrs", - "wk (>= 0.9.0)" - ], - "LinkingTo": [ - "Rcpp" - ], - "VignetteBuilder": "knitr", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "Config/testthat/edition": "2", - "Config/needs/coverage": "XML", - "SystemRequirements": "GDAL (>= 2.0.1), GEOS (>= 3.4.0), PROJ (>= 4.8.0), sqlite3", - "Collate": "'RcppExports.R' 'init.R' 'import-standalone-s3-register.R' 'crs.R' 'bbox.R' 'read.R' 'db.R' 'sfc.R' 'sfg.R' 'sf.R' 'bind.R' 'wkb.R' 'wkt.R' 'plot.R' 'geom-measures.R' 'geom-predicates.R' 'geom-transformers.R' 'transform.R' 'proj.R' 'sp.R' 'grid.R' 'arith.R' 'tidyverse.R' 'tidyverse-vctrs.R' 'cast_sfg.R' 'cast_sfc.R' 'graticule.R' 'datasets.R' 'aggregate.R' 'agr.R' 'maps.R' 'join.R' 'sample.R' 'valid.R' 'collection_extract.R' 'jitter.R' 'sgbp.R' 'spatstat.R' 'stars.R' 'crop.R' 'gdal_utils.R' 'nearest.R' 'normalize.R' 'sf-package.R' 'defunct.R' 'z_range.R' 'm_range.R' 'shift_longitude.R' 'make_grid.R' 's2.R' 'terra.R' 'geos-overlayng.R' 'break_antimeridian.R'", - "NeedsCompilation": "yes", - "Author": "Edzer Pebesma [aut, cre] (ORCID: ), Roger Bivand [ctb] (ORCID: ), Etienne Racine [ctb], Michael Sumner [ctb], Ian Cook [ctb], Tim Keitt [ctb], Robin Lovelace [ctb], Hadley Wickham [ctb], Jeroen Ooms [ctb] (ORCID: ), Kirill Müller [ctb], Thomas Lin Pedersen [ctb], Dan Baston [ctb], Dewey Dunnington [ctb] (ORCID: )", - "Maintainer": "Edzer Pebesma ", - "Repository": "https://packagemanager.posit.co/cran/latest" - }, - "snakecase": { - "Package": "snakecase", - "Version": "0.11.1", - "Source": "Repository", - "Date": "2023-08-27", - "Title": "Convert Strings into any Case", - "Description": "A consistent, flexible and easy to use tool to parse and convert strings into cases like snake or camel among others.", - "Authors@R": "c( person(\"Malte\", \"Grosser\", , \"malte.grosser@gmail.com\", role = c(\"aut\", \"cre\")))", - "Maintainer": "Malte Grosser ", - "Depends": [ - "R (>= 3.2)" - ], - "Imports": [ - "stringr", - "stringi" - ], - "Suggests": [ - "testthat", - "covr", - "tibble", - "purrrlyr", - "knitr", - "rmarkdown", - "magrittr" - ], - "URL": "https://github.com/Tazinho/snakecase", - "BugReports": "https://github.com/Tazinho/snakecase/issues", - "Encoding": "UTF-8", - "License": "GPL-3", - "RoxygenNote": "6.1.1", - "VignetteBuilder": "knitr", - "NeedsCompilation": "no", - "Author": "Malte Grosser [aut, cre]", - "Repository": "CRAN" - }, - "stringi": { - "Package": "stringi", - "Version": "1.8.7", - "Source": "Repository", - "Date": "2025-03-27", - "Title": "Fast and Portable Character String Processing Facilities", - "Description": "A collection of character string/text/natural language processing tools for pattern searching (e.g., with 'Java'-like regular expressions or the 'Unicode' collation algorithm), random string generation, case mapping, string transliteration, concatenation, sorting, padding, wrapping, Unicode normalisation, date-time formatting and parsing, and many more. They are fast, consistent, convenient, and - thanks to 'ICU' (International Components for Unicode) - portable across all locales and platforms. Documentation about 'stringi' is provided via its website at and the paper by Gagolewski (2022, ).", - "URL": "https://stringi.gagolewski.com/, https://github.com/gagolews/stringi, https://icu.unicode.org/", - "BugReports": "https://github.com/gagolews/stringi/issues", - "SystemRequirements": "ICU4C (>= 61, optional)", - "Type": "Package", - "Depends": [ - "R (>= 3.4)" - ], - "Imports": [ - "tools", - "utils", - "stats" - ], - "Biarch": "TRUE", - "License": "file LICENSE", - "Authors@R": "c(person(given = \"Marek\", family = \"Gagolewski\", role = c(\"aut\", \"cre\", \"cph\"), email = \"marek@gagolewski.com\", comment = c(ORCID = \"0000-0003-0637-6028\")), person(given = \"Bartek\", family = \"Tartanus\", role = \"ctb\"), person(\"Unicode, Inc. and others\", role=\"ctb\", comment = \"ICU4C source code, Unicode Character Database\") )", - "RoxygenNote": "7.3.2", - "Encoding": "UTF-8", - "NeedsCompilation": "yes", - "Author": "Marek Gagolewski [aut, cre, cph] (), Bartek Tartanus [ctb], Unicode, Inc. and others [ctb] (ICU4C source code, Unicode Character Database)", - "Maintainer": "Marek Gagolewski ", - "License_is_FOSS": "yes", - "Repository": "https://packagemanager.posit.co/cran/latest" - }, - "stringr": { - "Package": "stringr", - "Version": "1.5.1", - "Source": "Repository", - "Title": "Simple, Consistent Wrappers for Common String Operations", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\", \"cph\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "A consistent, simple and easy to use set of wrappers around the fantastic 'stringi' package. All function and argument names (and positions) are consistent, all functions deal with \"NA\"'s and zero length vectors in the same way, and the output from one function is easy to feed into the input of another.", - "License": "MIT + file LICENSE", - "URL": "https://stringr.tidyverse.org, https://github.com/tidyverse/stringr", - "BugReports": "https://github.com/tidyverse/stringr/issues", - "Depends": [ - "R (>= 3.6)" - ], - "Imports": [ - "cli", - "glue (>= 1.6.1)", - "lifecycle (>= 1.0.3)", - "magrittr", - "rlang (>= 1.0.0)", - "stringi (>= 1.5.3)", - "vctrs (>= 0.4.0)" - ], - "Suggests": [ - "covr", - "dplyr", - "gt", - "htmltools", - "htmlwidgets", - "knitr", - "rmarkdown", - "testthat (>= 3.0.0)", - "tibble" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "LazyData": "true", - "RoxygenNote": "7.2.3", - "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut, cre, cph], Posit Software, PBC [cph, fnd]", - "Maintainer": "Hadley Wickham ", - "Repository": "https://packagemanager.posit.co/cran/latest" - }, - "sys": { - "Package": "sys", - "Version": "3.4.3", - "Source": "Repository", - "Type": "Package", - "Title": "Powerful and Reliable Tools for Running System Commands in R", - "Authors@R": "c(person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"ctb\"))", - "Description": "Drop-in replacements for the base system2() function with fine control and consistent behavior across platforms. 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Arguments on Windows automatically get encoded and quoted to work on different locales.", - "License": "MIT + file LICENSE", - "URL": "https://jeroen.r-universe.dev/sys", - "BugReports": "https://github.com/jeroen/sys/issues", - "Encoding": "UTF-8", - "RoxygenNote": "7.1.1", - "Suggests": [ - "unix (>= 1.4)", - "spelling", - "testthat" - ], - "Language": "en-US", - "NeedsCompilation": "yes", - "Author": "Jeroen Ooms [aut, cre] (), Gábor Csárdi [ctb]", - "Maintainer": "Jeroen Ooms ", - "Repository": "https://packagemanager.posit.co/cran/latest" - }, - "systemfonts": { - "Package": "systemfonts", - "Version": "1.2.3", - "Source": "Repository", - "Type": "Package", - "Title": "System Native Font Finding", - "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Jeroen\", \"Ooms\", , \"jeroen@berkeley.edu\", role = \"aut\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Devon\", \"Govett\", role = \"aut\", comment = \"Author of font-manager\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", - "Description": "Provides system native access to the font catalogue. 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person(\"Matthieu\", \"Gomez\", , \"mattg@princeton.edu\", role = \"ctb\"), person(\"Boris\", \"Demeshev\", , \"boris.demeshev@gmail.com\", role = \"ctb\"), person(\"Dieter\", \"Menne\", , \"dieter.menne@menne-biomed.de\", role = \"ctb\"), person(\"Benjamin\", \"Nutter\", , \"nutter@battelle.org\", role = \"ctb\"), person(\"Luke\", \"Johnston\", , \"luke.johnston@mail.utoronto.ca\", role = \"ctb\"), person(\"Ben\", \"Bolker\", , \"bolker@mcmaster.ca\", role = \"ctb\"), person(\"Francois\", \"Briatte\", , \"f.briatte@gmail.com\", role = \"ctb\"), person(\"Jeffrey\", \"Arnold\", , \"jeffrey.arnold@gmail.com\", role = \"ctb\"), person(\"Jonah\", \"Gabry\", , \"jsg2201@columbia.edu\", role = \"ctb\"), person(\"Luciano\", \"Selzer\", , \"luciano.selzer@gmail.com\", role = \"ctb\"), person(\"Gavin\", \"Simpson\", , \"ucfagls@gmail.com\", role = \"ctb\"), person(\"Jens\", \"Preussner\", , \"jens.preussner@mpi-bn.mpg.de\", role = \"ctb\"), person(\"Jay\", \"Hesselberth\", , \"jay.hesselberth@gmail.com\", role = \"ctb\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"ctb\"), person(\"Matthew\", \"Lincoln\", , \"matthew.d.lincoln@gmail.com\", role = \"ctb\"), person(\"Alessandro\", \"Gasparini\", , \"ag475@leicester.ac.uk\", role = \"ctb\"), person(\"Lukasz\", \"Komsta\", , \"lukasz.komsta@umlub.pl\", role = \"ctb\"), person(\"Frederick\", \"Novometsky\", role = \"ctb\"), person(\"Wilson\", \"Freitas\", role = \"ctb\"), person(\"Michelle\", \"Evans\", role = \"ctb\"), person(\"Jason Cory\", \"Brunson\", , \"cornelioid@gmail.com\", role = \"ctb\"), person(\"Simon\", \"Jackson\", , \"drsimonjackson@gmail.com\", role = \"ctb\"), person(\"Ben\", \"Whalley\", , \"ben.whalley@plymouth.ac.uk\", role = \"ctb\"), person(\"Karissa\", \"Whiting\", , \"karissa.whiting@gmail.com\", role = \"ctb\"), person(\"Yves\", \"Rosseel\", , \"yrosseel@gmail.com\", role = \"ctb\"), person(\"Michael\", \"Kuehn\", , \"mkuehn10@gmail.com\", role = \"ctb\"), 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\"wdenney@humanpredictions.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5759-428X\")), person(\"Nic\", \"Crane\", role = \"ctb\"), person(\"Andrew\", \"Bates\", role = \"ctb\"), person(\"Vincent\", \"Arel-Bundock\", , \"vincent.arel-bundock@umontreal.ca\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2042-7063\")), person(\"Hideaki\", \"Hayashi\", role = \"ctb\"), person(\"Luis\", \"Tobalina\", role = \"ctb\"), person(\"Annie\", \"Wang\", , \"anniewang.uc@gmail.com\", role = \"ctb\"), person(\"Wei Yang\", \"Tham\", , \"weiyang.tham@gmail.com\", role = \"ctb\"), person(\"Clara\", \"Wang\", , \"clara.wang.94@gmail.com\", role = \"ctb\"), person(\"Abby\", \"Smith\", , \"als1@u.northwestern.edu\", role = \"ctb\", comment = c(ORCID = \"0000-0002-3207-0375\")), person(\"Jasper\", \"Cooper\", , \"jaspercooper@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8639-3188\")), person(\"E Auden\", \"Krauska\", , \"krauskae@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-1466-5850\")), person(\"Alex\", \"Wang\", , \"x249wang@uwaterloo.ca\", role = \"ctb\"), person(\"Malcolm\", \"Barrett\", , \"malcolmbarrett@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0299-5825\")), person(\"Charles\", \"Gray\", , \"charlestigray@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9978-011X\")), person(\"Jared\", \"Wilber\", role = \"ctb\"), person(\"Vilmantas\", \"Gegzna\", , \"GegznaV@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9500-5167\")), person(\"Eduard\", \"Szoecs\", , \"eduardszoecs@gmail.com\", role = \"ctb\"), person(\"Frederik\", \"Aust\", , \"frederik.aust@uni-koeln.de\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4900-788X\")), person(\"Angus\", \"Moore\", , \"angusmoore9@gmail.com\", role = \"ctb\"), person(\"Nick\", \"Williams\", , \"ntwilliams.personal@gmail.com\", role = \"ctb\"), person(\"Marius\", \"Barth\", , \"marius.barth.uni.koeln@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-3421-6665\")), person(\"Bruna\", \"Wundervald\", , \"brunadaviesw@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-8163-220X\")), person(\"Joyce\", \"Cahoon\", , \"joyceyu48@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7217-4702\")), person(\"Grant\", \"McDermott\", , \"grantmcd@uoregon.edu\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7883-8573\")), person(\"Kevin\", \"Zarca\", , \"kevin.zarca@gmail.com\", role = \"ctb\"), person(\"Shiro\", \"Kuriwaki\", , \"shirokuriwaki@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5687-2647\")), person(\"Lukas\", \"Wallrich\", , \"lukas.wallrich@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2121-5177\")), person(\"James\", \"Martherus\", , \"james@martherus.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8285-3300\")), person(\"Chuliang\", \"Xiao\", , \"cxiao@umich.edu\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8466-9398\")), person(\"Joseph\", \"Larmarange\", , \"joseph@larmarange.net\", role = \"ctb\"), person(\"Max\", \"Kuhn\", , \"max@posit.co\", role = \"ctb\"), person(\"Michal\", \"Bojanowski\", , \"michal2992@gmail.com\", role = \"ctb\"), person(\"Hakon\", \"Malmedal\", , \"hmalmedal@gmail.com\", role = \"ctb\"), person(\"Clara\", \"Wang\", role = \"ctb\"), person(\"Sergio\", \"Oller\", , \"sergioller@gmail.com\", role = \"ctb\"), person(\"Luke\", \"Sonnet\", , \"luke.sonnet@gmail.com\", role = \"ctb\"), person(\"Jim\", \"Hester\", , \"jim.hester@posit.co\", role = \"ctb\"), person(\"Ben\", \"Schneider\", , \"benjamin.julius.schneider@gmail.com\", role = \"ctb\"), person(\"Bernie\", \"Gray\", , \"bfgray3@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-9190-6032\")), person(\"Mara\", \"Averick\", , \"mara@posit.co\", role = \"ctb\"), person(\"Aaron\", \"Jacobs\", , \"atheriel@gmail.com\", role = \"ctb\"), person(\"Andreas\", \"Bender\", , \"bender.at.R@gmail.com\", role = \"ctb\"), person(\"Sven\", \"Templer\", , \"sven.templer@gmail.com\", role = \"ctb\"), person(\"Paul-Christian\", \"Buerkner\", , \"paul.buerkner@gmail.com\", role = \"ctb\"), person(\"Matthew\", \"Kay\", , \"mjskay@umich.edu\", role = \"ctb\"), person(\"Erwan\", \"Le Pennec\", , \"lepennec@gmail.com\", role = \"ctb\"), person(\"Johan\", \"Junkka\", , \"johan.junkka@umu.se\", role = \"ctb\"), person(\"Hao\", \"Zhu\", , \"haozhu233@gmail.com\", role = \"ctb\"), person(\"Benjamin\", \"Soltoff\", , \"soltoffbc@uchicago.edu\", role = \"ctb\"), person(\"Zoe\", \"Wilkinson Saldana\", , \"zoewsaldana@gmail.com\", role = \"ctb\"), person(\"Tyler\", \"Littlefield\", , \"tylurp1@gmail.com\", role = \"ctb\"), person(\"Charles T.\", \"Gray\", , \"charlestigray@gmail.com\", role = \"ctb\"), person(\"Shabbh E.\", \"Banks\", role = \"ctb\"), person(\"Serina\", \"Robinson\", , \"robi0916@umn.edu\", role = \"ctb\"), person(\"Roger\", \"Bivand\", , \"Roger.Bivand@nhh.no\", role = \"ctb\"), person(\"Riinu\", \"Ots\", , \"riinuots@gmail.com\", role = \"ctb\"), person(\"Nicholas\", \"Williams\", , \"ntwilliams.personal@gmail.com\", role = \"ctb\"), person(\"Nina\", \"Jakobsen\", role = \"ctb\"), person(\"Michael\", \"Weylandt\", , \"michael.weylandt@gmail.com\", role = \"ctb\"), person(\"Lisa\", \"Lendway\", , \"llendway@macalester.edu\", role = \"ctb\"), person(\"Karl\", \"Hailperin\", , \"khailper@gmail.com\", role = \"ctb\"), person(\"Josue\", \"Rodriguez\", , \"jerrodriguez@ucdavis.edu\", role = \"ctb\"), person(\"Jenny\", \"Bryan\", , \"jenny@posit.co\", role = \"ctb\"), person(\"Chris\", \"Jarvis\", , \"Christopher1.jarvis@gmail.com\", role = \"ctb\"), person(\"Greg\", \"Macfarlane\", , \"gregmacfarlane@gmail.com\", role = \"ctb\"), person(\"Brian\", \"Mannakee\", , \"bmannakee@gmail.com\", role = \"ctb\"), person(\"Drew\", \"Tyre\", , \"atyre2@unl.edu\", role = \"ctb\"), person(\"Shreyas\", \"Singh\", , \"shreyas.singh.298@gmail.com\", role = \"ctb\"), person(\"Laurens\", \"Geffert\", , \"laurensgeffert@gmail.com\", role = \"ctb\"), person(\"Hong\", \"Ooi\", , \"hongooi@microsoft.com\", role = \"ctb\"), person(\"Henrik\", \"Bengtsson\", , \"henrikb@braju.com\", role = \"ctb\"), person(\"Eduard\", \"Szocs\", , \"eduardszoecs@gmail.com\", role = \"ctb\"), person(\"David\", \"Hugh-Jones\", , \"davidhughjones@gmail.com\", role = \"ctb\"), person(\"Matthieu\", \"Stigler\", , \"Matthieu.Stigler@gmail.com\", role = \"ctb\"), person(\"Hugo\", \"Tavares\", , \"hm533@cam.ac.uk\", role = \"ctb\", comment = c(ORCID = \"0000-0001-9373-2726\")), person(\"R. Willem\", \"Vervoort\", , \"Willemvervoort@gmail.com\", role = \"ctb\"), person(\"Brenton M.\", \"Wiernik\", , \"brenton@wiernik.org\", role = \"ctb\"), person(\"Josh\", \"Yamamoto\", , \"joshuayamamoto5@gmail.com\", role = \"ctb\"), person(\"Jasme\", \"Lee\", role = \"ctb\"), person(\"Taren\", \"Sanders\", , \"taren.sanders@acu.edu.au\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4504-6008\")), person(\"Ilaria\", \"Prosdocimi\", , \"prosdocimi.ilaria@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-8565-094X\")), person(\"Daniel D.\", \"Sjoberg\", , \"danield.sjoberg@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0862-2018\")), person(\"Alex\", \"Reinhart\", , \"areinhar@stat.cmu.edu\", role = \"ctb\", comment = c(ORCID = \"0000-0002-6658-514X\")) )", + "Description": "Summarizes key information about statistical objects in tidy tibbles. This makes it easy to report results, create plots and consistently work with large numbers of models at once. Broom provides three verbs that each provide different types of information about a model. tidy() summarizes information about model components such as coefficients of a regression. glance() reports information about an entire model, such as goodness of fit measures like AIC and BIC. augment() adds information about individual observations to a dataset, such as fitted values or influence measures.", + "License": "MIT + file LICENSE", + "URL": "https://broom.tidymodels.org/, https://github.com/tidymodels/broom", + "BugReports": "https://github.com/tidymodels/broom/issues", + "Depends": [ + "R (>= 4.1)" + ], + "Imports": [ + "backports", + "cli", + "dplyr (>= 1.0.0)", + "generics (>= 0.0.2)", + "glue", + "lifecycle", + "purrr", + "rlang (>= 1.1.0)", + "stringr", + "tibble (>= 3.0.0)", + "tidyr (>= 1.0.0)" + ], + "Suggests": [ + "AER", + "AUC", + "bbmle", + "betareg (>= 3.2-1)", + "biglm", + "binGroup", + "boot", + "btergm (>= 1.10.6)", + "car (>= 3.1-2)", + "carData", + "caret", + "cluster", + "cmprsk", + "coda", + "covr", + "drc", + "e1071", + "emmeans", + "epiR (>= 2.0.85)", + "ergm (>= 3.10.4)", + "fixest (>= 0.9.0)", + "gam (>= 1.15)", + "gee", + "geepack", + "ggplot2", + "glmnet", + "glmnetUtils", + "gmm", + "Hmisc", + "interp", + "irlba", + "joineRML", + "Kendall", + "knitr", + "ks", + "Lahman", + "lavaan (>= 0.6.18)", + "leaps", + "lfe", + "lm.beta", + "lme4", + "lmodel2", + "lmtest (>= 0.9.38)", + "lsmeans", + "maps", + "margins", + "MASS", + "mclust", + "mediation", + "metafor", + "mfx", + "mgcv", + "mlogit", + "modeldata", + "modeltests (>= 0.1.6)", + "muhaz", + "multcomp", + "network", + "nnet", + "ordinal", + "plm", + "poLCA", + "psych", + "quantreg", + "rmarkdown", + "robust", + "robustbase", + "rsample", + "sandwich", + "spatialreg", + "spdep (>= 1.1)", + "speedglm", + "spelling", + "stats4", + "survey", + "survival (>= 3.6-4)", + "systemfit", + "testthat (>= 3.0.0)", + "tseries", + "vars", + "zoo" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-25", + "Encoding": "UTF-8", + "Language": "en-US", + "RoxygenNote": "7.3.3", + "Collate": "'aaa-documentation-helper.R' 'null-and-default.R' 'aer.R' 'auc.R' 'base.R' 'bbmle.R' 'betareg.R' 'biglm.R' 'bingroup.R' 'boot.R' 'broom-package.R' 'broom.R' 'btergm.R' 'car.R' 'caret.R' 'cluster.R' 'cmprsk.R' 'data-frame.R' 'deprecated-0-7-0.R' 'drc.R' 'emmeans.R' 'epiR.R' 'ergm.R' 'fixest.R' 'gam.R' 'geepack.R' 'glmnet-cv-glmnet.R' 'glmnet-glmnet.R' 'gmm.R' 'hmisc.R' 'import-standalone-obj-type.R' 'import-standalone-types-check.R' 'joinerml.R' 'kendall.R' 'ks.R' 'lavaan.R' 'leaps.R' 'lfe.R' 'list-irlba.R' 'list-optim.R' 'list-svd.R' 'list-xyz.R' 'list.R' 'lm-beta.R' 'lmodel2.R' 'lmtest.R' 'maps.R' 'margins.R' 'mass-fitdistr.R' 'mass-negbin.R' 'mass-polr.R' 'mass-ridgelm.R' 'stats-lm.R' 'mass-rlm.R' 'mclust.R' 'mediation.R' 'metafor.R' 'mfx.R' 'mgcv.R' 'mlogit.R' 'muhaz.R' 'multcomp.R' 'nnet.R' 'nobs.R' 'ordinal-clm.R' 'ordinal-clmm.R' 'plm.R' 'polca.R' 'psych.R' 'stats-nls.R' 'quantreg-nlrq.R' 'quantreg-rq.R' 'quantreg-rqs.R' 'robust-glmrob.R' 'robust-lmrob.R' 'robustbase-glmrob.R' 'robustbase-lmrob.R' 'sp.R' 'spdep.R' 'speedglm-speedglm.R' 'speedglm-speedlm.R' 'stats-anova.R' 'stats-arima.R' 'stats-decompose.R' 'stats-factanal.R' 'stats-glm.R' 'stats-htest.R' 'stats-kmeans.R' 'stats-loess.R' 'stats-mlm.R' 'stats-prcomp.R' 'stats-smooth.spline.R' 'stats-summary-lm.R' 'stats-time-series.R' 'survey.R' 'survival-aareg.R' 'survival-cch.R' 'survival-coxph.R' 'survival-pyears.R' 'survival-survdiff.R' 'survival-survexp.R' 'survival-survfit.R' 'survival-survreg.R' 'systemfit.R' 'tseries.R' 'utilities.R' 'vars.R' 'zoo.R' 'zzz.R'", + "NeedsCompilation": "no", + "Author": "David Robinson [aut], Alex Hayes [aut] (ORCID: ), Simon Couch [aut] (ORCID: ), Emil Hvitfeldt [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: ), Indrajeet Patil [ctb] (ORCID: ), Derek Chiu [ctb], Matthieu Gomez [ctb], Boris Demeshev [ctb], Dieter Menne [ctb], Benjamin Nutter [ctb], Luke Johnston [ctb], Ben Bolker [ctb], Francois Briatte [ctb], Jeffrey Arnold [ctb], Jonah Gabry [ctb], Luciano Selzer [ctb], Gavin Simpson [ctb], Jens Preussner [ctb], Jay Hesselberth [ctb], Hadley Wickham [ctb], Matthew Lincoln [ctb], Alessandro Gasparini [ctb], Lukasz Komsta [ctb], Frederick Novometsky [ctb], Wilson Freitas [ctb], Michelle Evans [ctb], Jason Cory Brunson [ctb], Simon Jackson [ctb], Ben Whalley [ctb], Karissa Whiting [ctb], Yves Rosseel [ctb], Michael Kuehn [ctb], Jorge Cimentada [ctb], Erle Holgersen [ctb], Karl Dunkle Werner [ctb] (ORCID: ), Ethan Christensen [ctb], Steven Pav [ctb], Paul PJ [ctb], Ben Schneider [ctb], Patrick Kennedy [ctb], Lily Medina [ctb], Brian Fannin [ctb], Jason Muhlenkamp [ctb], Matt Lehman [ctb], Bill Denney [ctb] (ORCID: ), Nic Crane [ctb], Andrew Bates [ctb], Vincent Arel-Bundock [ctb] (ORCID: ), Hideaki Hayashi [ctb], Luis Tobalina [ctb], Annie Wang [ctb], Wei Yang Tham [ctb], Clara Wang [ctb], Abby Smith [ctb] (ORCID: ), Jasper Cooper [ctb] (ORCID: ), E Auden Krauska [ctb] (ORCID: ), Alex Wang [ctb], Malcolm Barrett [ctb] (ORCID: ), Charles Gray [ctb] (ORCID: ), Jared Wilber [ctb], Vilmantas Gegzna [ctb] (ORCID: ), Eduard Szoecs [ctb], Frederik Aust [ctb] (ORCID: ), Angus Moore [ctb], Nick Williams [ctb], Marius Barth [ctb] (ORCID: ), Bruna Wundervald [ctb] (ORCID: ), Joyce Cahoon [ctb] (ORCID: ), Grant McDermott [ctb] (ORCID: ), Kevin Zarca [ctb], Shiro Kuriwaki [ctb] (ORCID: ), Lukas Wallrich [ctb] (ORCID: ), James Martherus [ctb] (ORCID: ), Chuliang Xiao [ctb] (ORCID: ), Joseph Larmarange [ctb], Max Kuhn [ctb], Michal Bojanowski [ctb], Hakon Malmedal [ctb], Clara Wang [ctb], Sergio Oller [ctb], Luke Sonnet [ctb], Jim Hester [ctb], Ben Schneider [ctb], Bernie Gray [ctb] (ORCID: ), Mara Averick [ctb], Aaron Jacobs [ctb], Andreas Bender [ctb], Sven Templer [ctb], Paul-Christian Buerkner [ctb], Matthew Kay [ctb], Erwan Le Pennec [ctb], Johan Junkka [ctb], Hao Zhu [ctb], Benjamin Soltoff [ctb], Zoe Wilkinson Saldana [ctb], Tyler Littlefield [ctb], Charles T. Gray [ctb], Shabbh E. Banks [ctb], Serina Robinson [ctb], Roger Bivand [ctb], Riinu Ots [ctb], Nicholas Williams [ctb], Nina Jakobsen [ctb], Michael Weylandt [ctb], Lisa Lendway [ctb], Karl Hailperin [ctb], Josue Rodriguez [ctb], Jenny Bryan [ctb], Chris Jarvis [ctb], Greg Macfarlane [ctb], Brian Mannakee [ctb], Drew Tyre [ctb], Shreyas Singh [ctb], Laurens Geffert [ctb], Hong Ooi [ctb], Henrik Bengtsson [ctb], Eduard Szocs [ctb], David Hugh-Jones [ctb], Matthieu Stigler [ctb], Hugo Tavares [ctb] (ORCID: ), R. Willem Vervoort [ctb], Brenton M. Wiernik [ctb], Josh Yamamoto [ctb], Jasme Lee [ctb], Taren Sanders [ctb] (ORCID: ), Ilaria Prosdocimi [ctb] (ORCID: ), Daniel D. 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Wilke [aut] (Original author, ORCID: ), Thomas Lin Pedersen [aut, cre] (ORCID: ), Posit, PBC [cph, fnd] (ROR: )", + "Maintainer": "Thomas Lin Pedersen ", + "Repository": "https://packagemanager.posit.co/cran/latest" + }, + "janitor": { + "Package": "janitor", + "Version": "2.2.1", + "Source": "Repository", + "Title": "Simple Tools for Examining and Cleaning Dirty Data", + "Authors@R": "c(person(\"Sam\", \"Firke\", email = \"samuel.firke@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Bill\", \"Denney\", email = \"wdenney@humanpredictions.com\", role = \"ctb\"), person(\"Chris\", \"Haid\", email = \"chrishaid@gmail.com\", role = \"ctb\"), person(\"Ryan\", \"Knight\", email = \"ryangknight@gmail.com\", role = \"ctb\"), person(\"Malte\", \"Grosser\", email = \"malte.grosser@gmail.com\", role = \"ctb\"), person(\"Jonathan\", \"Zadra\", email = \"jonathan.zadra@sorensonimpact.com\", role = \"ctb\"))", + "Description": "The main janitor functions can: perfectly format data.frame column names; provide quick counts of variable combinations (i.e., frequency tables and crosstabs); and explore duplicate records. Other janitor functions nicely format the tabulation results. These tabulate-and-report functions approximate popular features of SPSS and Microsoft Excel. This package follows the principles of the \"tidyverse\" and works well with the pipe function %>%. janitor was built with beginning-to-intermediate R users in mind and is optimized for user-friendliness.", + "URL": "https://github.com/sfirke/janitor, https://sfirke.github.io/janitor/", + "BugReports": "https://github.com/sfirke/janitor/issues", + "Depends": [ + "R (>= 3.1.2)" + ], + "Imports": [ + "dplyr (>= 1.0.0)", + "hms", + "lifecycle", + "lubridate", + "magrittr", + "purrr", + "rlang", + "stringi", + "stringr", + "snakecase (>= 0.9.2)", + "tidyselect (>= 1.0.0)", + "tidyr (>= 0.7.0)" + ], + "License": "MIT + file LICENSE", + "RoxygenNote": "7.2.3", + "Suggests": [ + "dbplyr", + "knitr", + "rmarkdown", + "RSQLite", + "sf", + "testthat (>= 3.0.0)", + "tibble", + "tidygraph" + ], + "VignetteBuilder": "knitr", + "Encoding": "UTF-8", + "Config/testthat/edition": "3", + "NeedsCompilation": "no", + "Author": "Sam Firke [aut, cre], Bill Denney [ctb], Chris Haid [ctb], Ryan Knight [ctb], Malte Grosser [ctb], Jonathan Zadra [ctb]", + "Maintainer": "Sam Firke ", + "Repository": "CRAN" + }, + "jquerylib": { + "Package": "jquerylib", + "Version": "0.1.4", + "Source": "Repository", + "Title": "Obtain 'jQuery' as an HTML Dependency Object", + "Authors@R": "c( person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"carson@rstudio.com\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@rstudio.com\"), person(family = \"RStudio\", role = \"cph\"), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/lib/jquery-AUTHORS.txt\") )", + "Description": "Obtain any major version of 'jQuery' () and use it in any webpage generated by 'htmltools' (e.g. 'shiny', 'htmlwidgets', and 'rmarkdown'). Most R users don't need to use this package directly, but other R packages (e.g. 'shiny', 'rmarkdown', etc.) depend on this package to avoid bundling redundant copies of 'jQuery'.", + "License": "MIT + file LICENSE", + "Encoding": "UTF-8", + "Config/testthat/edition": "3", + "RoxygenNote": "7.0.2", + "Imports": [ + "htmltools" + ], + "Suggests": [ + "testthat" + ], + "NeedsCompilation": "no", + "Author": "Carson Sievert [aut, cre] (), Joe Cheng [aut], RStudio [cph], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/lib/jquery-AUTHORS.txt)", + "Maintainer": "Carson Sievert ", + "Repository": "CRAN" + }, + "jsonlite": { + "Package": "jsonlite", + "Version": "2.0.0", + "Source": "Repository", + "Title": "A Simple and Robust JSON Parser and Generator for R", + "License": "MIT + file LICENSE", + "Depends": [ + "methods" + ], + "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Duncan\", \"Temple Lang\", role = \"ctb\"), person(\"Lloyd\", \"Hilaiel\", role = \"cph\", comment=\"author of bundled libyajl\"))", + "URL": "https://jeroen.r-universe.dev/jsonlite https://arxiv.org/abs/1403.2805", + "BugReports": "https://github.com/jeroen/jsonlite/issues", + "Maintainer": "Jeroen Ooms ", + "VignetteBuilder": "knitr, R.rsp", + "Description": "A reasonably fast JSON parser and generator, optimized for statistical data and the web. Offers simple, flexible tools for working with JSON in R, and is particularly powerful for building pipelines and interacting with a web API. The implementation is based on the mapping described in the vignette (Ooms, 2014). In addition to converting JSON data from/to R objects, 'jsonlite' contains functions to stream, validate, and prettify JSON data. The unit tests included with the package verify that all edge cases are encoded and decoded consistently for use with dynamic data in systems and applications.", + "Suggests": [ + "httr", + "vctrs", + "testthat", + "knitr", + "rmarkdown", + "R.rsp", + "sf" + ], + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre] (), Duncan Temple Lang [ctb], Lloyd Hilaiel [cph] (author of bundled libyajl)", + "Repository": "CRAN" + }, + "knitr": { + "Package": "knitr", + "Version": "1.51", + "Source": "Repository", + "Type": "Package", + "Title": "A General-Purpose Package for Dynamic Report Generation in R", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Abhraneel\", \"Sarma\", role = \"ctb\"), person(\"Adam\", \"Vogt\", role = \"ctb\"), person(\"Alastair\", \"Andrew\", role = \"ctb\"), person(\"Alex\", 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The function rst2pdf() requires rst2pdf (https://github.com/rst2pdf/rst2pdf).", + "Collate": "'block.R' 'cache.R' 'citation.R' 'hooks-html.R' 'plot.R' 'utils.R' 'defaults.R' 'concordance.R' 'engine.R' 'highlight.R' 'themes.R' 'header.R' 'hooks-asciidoc.R' 'hooks-chunk.R' 'hooks-extra.R' 'hooks-latex.R' 'hooks-md.R' 'hooks-rst.R' 'hooks-textile.R' 'hooks.R' 'otel.R' 'output.R' 'package.R' 'pandoc.R' 'params.R' 'parser.R' 'pattern.R' 'rocco.R' 'spin.R' 'table.R' 'template.R' 'utils-conversion.R' 'utils-rd2html.R' 'utils-string.R' 'utils-sweave.R' 'utils-upload.R' 'utils-vignettes.R' 'zzz.R'", + "RoxygenNote": "7.3.3", + "NeedsCompilation": "no", + "Author": "Yihui Xie [aut, cre] (ORCID: , URL: https://yihui.org), Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Amar Al-Zubaidi [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto [ctb] (ORCID: ), Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Bulat Yapparov [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hall [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Ellis Hughes [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jacob Bien [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Lorenz Walthert [ctb], Lucas Gallindo [ctb], Marius Hofert [ctb], Martin Modrák [ctb], Michael Chirico [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Miller Patrick [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Niels Richard Hansen [ctb], Noam Ross [ctb], Obada Mahdi [ctb], Pavel N. Krivitsky [ctb] (ORCID: ), Pedro Faria [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Rodrigo Copetti [ctb], Romain Francois [ctb], Ruaridh Williamson [ctb], Sagiru Mati [ctb] (ORCID: ), Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Sylvain Rousseau [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tim Mastny [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb], Zhian N. 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Warnes [ctb], Zhian N. Kamvar [ctb]", + "Maintainer": "Hadley Wickham ", + "Repository": "https://packagemanager.posit.co/cran/latest" + }, + "zeallot": { + "Package": "zeallot", + "Version": "0.2.0", + "Source": "Repository", + "Type": "Package", + "Title": "Multiple, Unpacking, and Destructuring Assignment", + "Authors@R": "c( person(\"Nathan\", \"Teetor\", email = \"nate@haufin.ch\", role = c(\"aut\", \"cre\")), person(\"Paul\", \"Teetor\", role = \"ctb\"))", + "Description": "Provides a %<-% operator to perform multiple, unpacking, and destructuring assignment in R. The operator unpacks the right-hand side of an assignment into multiple values and assigns these values to variables on the left-hand side of the assignment.", + "URL": "https://github.com/r-lib/zeallot", + "BugReports": "https://github.com/r-lib/zeallot/issues", + "License": "MIT + file LICENSE", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "VignetteBuilder": "knitr", + "Depends": [ + "R (>= 3.2)" + ], + "Suggests": [ + "codetools", + "testthat", + "knitr", + "rmarkdown", + "purrr" + ], + "NeedsCompilation": "no", + "Author": "Nathan Teetor [aut, cre], Paul Teetor [ctb]", + "Maintainer": "Nathan Teetor ", + "Repository": "https://packagemanager.posit.co/cran/latest" + }, + "zip": { + "Package": "zip", + "Version": "2.3.3", + "Source": "Repository", + "Title": "Cross-Platform 'zip' Compression", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Kuba\", \"Podgórski\", role = \"ctb\"), person(\"Rich\", \"Geldreich\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Description": "Cross-Platform 'zip' Compression Library. A replacement for the 'zip' function, that does not require any additional external tools on any platform.", + "License": "MIT + file LICENSE", + "URL": "https://github.com/r-lib/zip, https://r-lib.github.io/zip/", + "BugReports": "https://github.com/r-lib/zip/issues", + "Suggests": [ + "covr", + "pillar", + "processx", + "R6", + "testthat", + "withr" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-05-07", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2.9000", + "NeedsCompilation": "yes", + "Author": "Gábor Csárdi [aut, cre], Kuba Podgórski [ctb], Rich Geldreich [ctb], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Gábor Csárdi ", + "Repository": "https://packagemanager.posit.co/cran/latest" + } + } +} diff --git a/renv/activate.R b/renv/activate.R index 90b251c..5b4233b 100644 --- a/renv/activate.R +++ b/renv/activate.R @@ -1,1334 +1,1334 @@ - -local({ - - # the requested version of renv - version <- "1.1.4" - attr(version, "sha") <- NULL - - # the project directory - project <- Sys.getenv("RENV_PROJECT") - if (!nzchar(project)) - project <- getwd() - - # use start-up diagnostics if enabled - diagnostics <- Sys.getenv("RENV_STARTUP_DIAGNOSTICS", unset = "FALSE") - if (diagnostics) { - start <- Sys.time() - profile <- tempfile("renv-startup-", fileext = ".Rprof") - utils::Rprof(profile) - on.exit({ - utils::Rprof(NULL) - elapsed <- signif(difftime(Sys.time(), start, units = "auto"), digits = 2L) - writeLines(sprintf("- renv took %s to run the autoloader.", format(elapsed))) - writeLines(sprintf("- Profile: %s", profile)) - print(utils::summaryRprof(profile)) - }, add = TRUE) - } - - # figure out whether the autoloader is enabled - enabled <- local({ - - # first, check config option - override <- getOption("renv.config.autoloader.enabled") - if (!is.null(override)) - return(override) - - # if we're being run in a context where R_LIBS is already set, - # don't load -- presumably we're being run as a sub-process and - # the parent process has already set up library paths for us - rcmd <- Sys.getenv("R_CMD", unset = NA) - rlibs <- Sys.getenv("R_LIBS", unset = NA) - if (!is.na(rlibs) && !is.na(rcmd)) - return(FALSE) - - # next, check environment variables - # prefer using the configuration one in the future - envvars <- c( - "RENV_CONFIG_AUTOLOADER_ENABLED", - "RENV_AUTOLOADER_ENABLED", - "RENV_ACTIVATE_PROJECT" - ) - - for (envvar in envvars) { - envval <- Sys.getenv(envvar, unset = NA) - if (!is.na(envval)) - return(tolower(envval) %in% c("true", "t", "1")) - } - - # enable by default - TRUE - - }) - - # bail if we're not enabled - if (!enabled) { - - # if we're not enabled, we might still need to manually load - # the user profile here - profile <- Sys.getenv("R_PROFILE_USER", unset = "~/.Rprofile") - if (file.exists(profile)) { - cfg <- Sys.getenv("RENV_CONFIG_USER_PROFILE", unset = "TRUE") - if (tolower(cfg) %in% c("true", "t", "1")) - sys.source(profile, envir = globalenv()) - } - - return(FALSE) - - } - - # avoid recursion - if (identical(getOption("renv.autoloader.running"), TRUE)) { - warning("ignoring recursive attempt to run renv autoloader") - return(invisible(TRUE)) - } - - # signal that we're loading renv during R startup - options(renv.autoloader.running = TRUE) - on.exit(options(renv.autoloader.running = NULL), add = TRUE) - - # signal that we've consented to use renv - options(renv.consent = TRUE) - - # load the 'utils' package eagerly -- this ensures that renv shims, which - # mask 'utils' packages, will come first on the search path - library(utils, lib.loc = .Library) - - # unload renv if it's already been loaded - if ("renv" %in% loadedNamespaces()) - unloadNamespace("renv") - - # load bootstrap tools - ansify <- function(text) { - if (renv_ansify_enabled()) - renv_ansify_enhanced(text) - else - renv_ansify_default(text) - } - - renv_ansify_enabled <- function() { - - override <- Sys.getenv("RENV_ANSIFY_ENABLED", unset = NA) - if (!is.na(override)) - return(as.logical(override)) - - pane <- Sys.getenv("RSTUDIO_CHILD_PROCESS_PANE", unset = NA) - if (identical(pane, "build")) - return(FALSE) - - testthat <- Sys.getenv("TESTTHAT", unset = "false") - if (tolower(testthat) %in% "true") - return(FALSE) - - iderun <- Sys.getenv("R_CLI_HAS_HYPERLINK_IDE_RUN", unset = "false") - if (tolower(iderun) %in% "false") - return(FALSE) - - TRUE - - } - - renv_ansify_default <- function(text) { - text - } - - renv_ansify_enhanced <- function(text) { - - # R help links - pattern <- "`\\?(renv::(?:[^`])+)`" - replacement <- "`\033]8;;x-r-help:\\1\a?\\1\033]8;;\a`" - text <- gsub(pattern, replacement, text, perl = TRUE) - - # runnable code - pattern <- "`(renv::(?:[^`])+)`" - replacement <- "`\033]8;;x-r-run:\\1\a\\1\033]8;;\a`" - text <- gsub(pattern, replacement, text, perl = TRUE) - - # return ansified text - text - - } - - renv_ansify_init <- function() { - - envir <- renv_envir_self() - if (renv_ansify_enabled()) - assign("ansify", renv_ansify_enhanced, envir = envir) - else - assign("ansify", renv_ansify_default, envir = envir) - - } - - `%||%` <- function(x, y) { - if (is.null(x)) y else x - } - - catf <- function(fmt, ..., appendLF = TRUE) { - - quiet <- getOption("renv.bootstrap.quiet", default = FALSE) - if (quiet) - return(invisible()) - - msg <- sprintf(fmt, ...) - cat(msg, file = stdout(), sep = if (appendLF) "\n" else "") - - invisible(msg) - - } - - header <- function(label, - ..., - prefix = "#", - suffix = "-", - n = min(getOption("width"), 78)) - { - label <- sprintf(label, ...) - n <- max(n - nchar(label) - nchar(prefix) - 2L, 8L) - if (n <= 0) - return(paste(prefix, label)) - - tail <- paste(rep.int(suffix, n), collapse = "") - paste0(prefix, " ", label, " ", tail) - - } - - heredoc <- function(text, leave = 0) { - - # remove leading, trailing whitespace - trimmed <- gsub("^\\s*\\n|\\n\\s*$", "", text) - - # split into lines - lines <- strsplit(trimmed, "\n", fixed = TRUE)[[1L]] - - # compute common indent - indent <- regexpr("[^[:space:]]", lines) - common <- min(setdiff(indent, -1L)) - leave - text <- paste(substring(lines, common), collapse = "\n") - - # substitute in ANSI links for executable renv code - ansify(text) - - } - - bootstrap <- function(version, library) { - - friendly <- renv_bootstrap_version_friendly(version) - section <- header(sprintf("Bootstrapping renv %s", friendly)) - catf(section) - - # attempt to download renv - catf("- Downloading renv ... ", appendLF = FALSE) - withCallingHandlers( - tarball <- renv_bootstrap_download(version), - error = function(err) { - catf("FAILED") - stop("failed to download:\n", conditionMessage(err)) - } - ) - catf("OK") - on.exit(unlink(tarball), add = TRUE) - - # now attempt to install - catf("- Installing renv ... ", appendLF = FALSE) - withCallingHandlers( - status <- renv_bootstrap_install(version, tarball, library), - error = function(err) { - catf("FAILED") - stop("failed to install:\n", conditionMessage(err)) - } - ) - catf("OK") - - # add empty line to break up bootstrapping from normal output - catf("") - - return(invisible()) - } - - renv_bootstrap_tests_running <- function() { - getOption("renv.tests.running", default = FALSE) - } - - renv_bootstrap_repos <- function() { - - # get CRAN repository - cran <- getOption("renv.repos.cran", "https://cloud.r-project.org") - - # check for repos override - repos <- Sys.getenv("RENV_CONFIG_REPOS_OVERRIDE", unset = NA) - if (!is.na(repos)) { - - # check for RSPM; if set, use a fallback repository for renv - rspm <- Sys.getenv("RSPM", unset = NA) - if (identical(rspm, repos)) - repos <- c(RSPM = rspm, CRAN = cran) - - return(repos) - - } - - # check for lockfile repositories - repos <- tryCatch(renv_bootstrap_repos_lockfile(), error = identity) - if (!inherits(repos, "error") && length(repos)) - return(repos) - - # retrieve current repos - repos <- getOption("repos") - - # ensure @CRAN@ entries are resolved - repos[repos == "@CRAN@"] <- cran - - # add in renv.bootstrap.repos if set - default <- c(FALLBACK = "https://cloud.r-project.org") - extra <- getOption("renv.bootstrap.repos", default = default) - repos <- c(repos, extra) - - # remove duplicates that might've snuck in - dupes <- duplicated(repos) | duplicated(names(repos)) - repos[!dupes] - - } - - renv_bootstrap_repos_lockfile <- function() { - - lockpath <- Sys.getenv("RENV_PATHS_LOCKFILE", unset = "renv.lock") - if (!file.exists(lockpath)) - return(NULL) - - lockfile <- tryCatch(renv_json_read(lockpath), error = identity) - if (inherits(lockfile, "error")) { - warning(lockfile) - return(NULL) - } - - repos <- lockfile$R$Repositories - if (length(repos) == 0) - return(NULL) - - keys <- vapply(repos, `[[`, "Name", FUN.VALUE = character(1)) - vals <- vapply(repos, `[[`, "URL", FUN.VALUE = character(1)) - names(vals) <- keys - - return(vals) - - } - - renv_bootstrap_download <- function(version) { - - sha <- attr(version, "sha", exact = TRUE) - - methods <- if (!is.null(sha)) { - - # attempting to bootstrap a development version of renv - c( - function() renv_bootstrap_download_tarball(sha), - function() renv_bootstrap_download_github(sha) - ) - - } else { - - # attempting to bootstrap a release version of renv - c( - function() renv_bootstrap_download_tarball(version), - function() renv_bootstrap_download_cran_latest(version), - function() renv_bootstrap_download_cran_archive(version) - ) - - } - - for (method in methods) { - path <- tryCatch(method(), error = identity) - if (is.character(path) && file.exists(path)) - return(path) - } - - stop("All download methods failed") - - } - - renv_bootstrap_download_impl <- function(url, destfile) { - - mode <- "wb" - - # https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17715 - fixup <- - Sys.info()[["sysname"]] == "Windows" && - substring(url, 1L, 5L) == "file:" - - if (fixup) - mode <- "w+b" - - args <- list( - url = url, - destfile = destfile, - mode = mode, - quiet = TRUE - ) - - if ("headers" %in% names(formals(utils::download.file))) { - headers <- renv_bootstrap_download_custom_headers(url) - if (length(headers) && is.character(headers)) - args$headers <- headers - } - - do.call(utils::download.file, args) - - } - - renv_bootstrap_download_custom_headers <- function(url) { - - headers <- getOption("renv.download.headers") - if (is.null(headers)) - return(character()) - - if (!is.function(headers)) - stopf("'renv.download.headers' is not a function") - - headers <- headers(url) - if (length(headers) == 0L) - return(character()) - - if (is.list(headers)) - headers <- unlist(headers, recursive = FALSE, use.names = TRUE) - - ok <- - is.character(headers) && - is.character(names(headers)) && - all(nzchar(names(headers))) - - if (!ok) - stop("invocation of 'renv.download.headers' did not return a named character vector") - - headers - - } - - renv_bootstrap_download_cran_latest <- function(version) { - - spec <- renv_bootstrap_download_cran_latest_find(version) - type <- spec$type - repos <- spec$repos - - baseurl <- utils::contrib.url(repos = repos, type = type) - ext <- if (identical(type, "source")) - ".tar.gz" - else if (Sys.info()[["sysname"]] == "Windows") - ".zip" - else - ".tgz" - name <- sprintf("renv_%s%s", version, ext) - url <- paste(baseurl, name, sep = "/") - - destfile <- file.path(tempdir(), name) - status <- tryCatch( - renv_bootstrap_download_impl(url, destfile), - condition = identity - ) - - if (inherits(status, "condition")) - return(FALSE) - - # report success and return - destfile - - } - - renv_bootstrap_download_cran_latest_find <- function(version) { - - # check whether binaries are supported on this system - binary <- - getOption("renv.bootstrap.binary", default = TRUE) && - !identical(.Platform$pkgType, "source") && - !identical(getOption("pkgType"), "source") && - Sys.info()[["sysname"]] %in% c("Darwin", "Windows") - - types <- c(if (binary) "binary", "source") - - # iterate over types + repositories - for (type in types) { - for (repos in renv_bootstrap_repos()) { - - # build arguments for utils::available.packages() call - args <- list(type = type, repos = repos) - - # add custom headers if available -- note that - # utils::available.packages() will pass this to download.file() - if ("headers" %in% names(formals(utils::download.file))) { - headers <- renv_bootstrap_download_custom_headers(repos) - if (length(headers) && is.character(headers)) - args$headers <- headers - } - - # retrieve package database - db <- tryCatch( - as.data.frame( - do.call(utils::available.packages, args), - stringsAsFactors = FALSE - ), - error = identity - ) - - if (inherits(db, "error")) - next - - # check for compatible entry - entry <- db[db$Package %in% "renv" & db$Version %in% version, ] - if (nrow(entry) == 0) - next - - # found it; return spec to caller - spec <- list(entry = entry, type = type, repos = repos) - return(spec) - - } - } - - # if we got here, we failed to find renv - fmt <- "renv %s is not available from your declared package repositories" - stop(sprintf(fmt, version)) - - } - - renv_bootstrap_download_cran_archive <- function(version) { - - name <- sprintf("renv_%s.tar.gz", version) - repos <- renv_bootstrap_repos() - urls <- file.path(repos, "src/contrib/Archive/renv", name) - destfile <- file.path(tempdir(), name) - - for (url in urls) { - - status <- tryCatch( - renv_bootstrap_download_impl(url, destfile), - condition = identity - ) - - if (identical(status, 0L)) - return(destfile) - - } - - return(FALSE) - - } - - renv_bootstrap_download_tarball <- function(version) { - - # if the user has provided the path to a tarball via - # an environment variable, then use it - tarball <- Sys.getenv("RENV_BOOTSTRAP_TARBALL", unset = NA) - if (is.na(tarball)) - return() - - # allow directories - if (dir.exists(tarball)) { - name <- sprintf("renv_%s.tar.gz", version) - tarball <- file.path(tarball, name) - } - - # bail if it doesn't exist - if (!file.exists(tarball)) { - - # let the user know we weren't able to honour their request - fmt <- "- RENV_BOOTSTRAP_TARBALL is set (%s) but does not exist." - msg <- sprintf(fmt, tarball) - warning(msg) - - # bail - return() - - } - - catf("- Using local tarball '%s'.", tarball) - tarball - - } - - renv_bootstrap_github_token <- function() { - for (envvar in c("GITHUB_TOKEN", "GITHUB_PAT", "GH_TOKEN")) { - envval <- Sys.getenv(envvar, unset = NA) - if (!is.na(envval)) - return(envval) - } - } - - renv_bootstrap_download_github <- function(version) { - - enabled <- Sys.getenv("RENV_BOOTSTRAP_FROM_GITHUB", unset = "TRUE") - if (!identical(enabled, "TRUE")) - return(FALSE) - - # prepare download options - token <- renv_bootstrap_github_token() - if (is.null(token)) - token <- "" - - if (nzchar(Sys.which("curl")) && nzchar(token)) { - fmt <- "--location --fail --header \"Authorization: token %s\"" - extra <- sprintf(fmt, token) - saved <- options("download.file.method", "download.file.extra") - options(download.file.method = "curl", download.file.extra = extra) - on.exit(do.call(base::options, saved), add = TRUE) - } else if (nzchar(Sys.which("wget")) && nzchar(token)) { - fmt <- "--header=\"Authorization: token %s\"" - extra <- sprintf(fmt, token) - saved <- options("download.file.method", "download.file.extra") - options(download.file.method = "wget", download.file.extra = extra) - on.exit(do.call(base::options, saved), add = TRUE) - } - - url <- file.path("https://api.github.com/repos/rstudio/renv/tarball", version) - name <- sprintf("renv_%s.tar.gz", version) - destfile <- file.path(tempdir(), name) - - status <- tryCatch( - renv_bootstrap_download_impl(url, destfile), - condition = identity - ) - - if (!identical(status, 0L)) - return(FALSE) - - renv_bootstrap_download_augment(destfile) - - return(destfile) - - } - - # Add Sha to DESCRIPTION. This is stop gap until #890, after which we - # can use renv::install() to fully capture metadata. - renv_bootstrap_download_augment <- function(destfile) { - sha <- renv_bootstrap_git_extract_sha1_tar(destfile) - if (is.null(sha)) { - return() - } - - # Untar - tempdir <- tempfile("renv-github-") - on.exit(unlink(tempdir, recursive = TRUE), add = TRUE) - untar(destfile, exdir = tempdir) - pkgdir <- dir(tempdir, full.names = TRUE)[[1]] - - # Modify description - desc_path <- file.path(pkgdir, "DESCRIPTION") - desc_lines <- readLines(desc_path) - remotes_fields <- c( - "RemoteType: github", - "RemoteHost: api.github.com", - "RemoteRepo: renv", - "RemoteUsername: rstudio", - "RemotePkgRef: rstudio/renv", - paste("RemoteRef: ", sha), - paste("RemoteSha: ", sha) - ) - writeLines(c(desc_lines[desc_lines != ""], remotes_fields), con = desc_path) - - # Re-tar - local({ - old <- setwd(tempdir) - on.exit(setwd(old), add = TRUE) - - tar(destfile, compression = "gzip") - }) - invisible() - } - - # Extract the commit hash from a git archive. Git archives include the SHA1 - # hash as the comment field of the tarball pax extended header - # (see https://www.kernel.org/pub/software/scm/git/docs/git-archive.html) - # For GitHub archives this should be the first header after the default one - # (512 byte) header. - renv_bootstrap_git_extract_sha1_tar <- function(bundle) { - - # open the bundle for reading - # We use gzcon for everything because (from ?gzcon) - # > Reading from a connection which does not supply a 'gzip' magic - # > header is equivalent to reading from the original connection - conn <- gzcon(file(bundle, open = "rb", raw = TRUE)) - on.exit(close(conn)) - - # The default pax header is 512 bytes long and the first pax extended header - # with the comment should be 51 bytes long - # `52 comment=` (11 chars) + 40 byte SHA1 hash - len <- 0x200 + 0x33 - res <- rawToChar(readBin(conn, "raw", n = len)[0x201:len]) - - if (grepl("^52 comment=", res)) { - sub("52 comment=", "", res) - } else { - NULL - } - } - - renv_bootstrap_install <- function(version, tarball, library) { - - # attempt to install it into project library - dir.create(library, showWarnings = FALSE, recursive = TRUE) - output <- renv_bootstrap_install_impl(library, tarball) - - # check for successful install - status <- attr(output, "status") - if (is.null(status) || identical(status, 0L)) - return(status) - - # an error occurred; report it - header <- "installation of renv failed" - lines <- paste(rep.int("=", nchar(header)), collapse = "") - text <- paste(c(header, lines, output), collapse = "\n") - stop(text) - - } - - renv_bootstrap_install_impl <- function(library, tarball) { - - # invoke using system2 so we can capture and report output - bin <- R.home("bin") - exe <- if (Sys.info()[["sysname"]] == "Windows") "R.exe" else "R" - R <- file.path(bin, exe) - - args <- c( - "--vanilla", "CMD", "INSTALL", "--no-multiarch", - "-l", shQuote(path.expand(library)), - shQuote(path.expand(tarball)) - ) - - system2(R, args, stdout = TRUE, stderr = TRUE) - - } - - renv_bootstrap_platform_prefix_default <- function() { - - # read version component - version <- Sys.getenv("RENV_PATHS_VERSION", unset = "R-%v") - - # expand placeholders - placeholders <- list( - list("%v", format(getRversion()[1, 1:2])), - list("%V", format(getRversion()[1, 1:3])) - ) - - for (placeholder in placeholders) - version <- gsub(placeholder[[1L]], placeholder[[2L]], version, fixed = TRUE) - - # include SVN revision for development versions of R - # (to avoid sharing platform-specific artefacts with released versions of R) - devel <- - identical(R.version[["status"]], "Under development (unstable)") || - identical(R.version[["nickname"]], "Unsuffered Consequences") - - if (devel) - version <- paste(version, R.version[["svn rev"]], sep = "-r") - - version - - } - - renv_bootstrap_platform_prefix <- function() { - - # construct version prefix - version <- renv_bootstrap_platform_prefix_default() - - # build list of path components - components <- c(version, R.version$platform) - - # include prefix if provided by user - prefix <- renv_bootstrap_platform_prefix_impl() - if (!is.na(prefix) && nzchar(prefix)) - components <- c(prefix, components) - - # build prefix - paste(components, collapse = "/") - - } - - renv_bootstrap_platform_prefix_impl <- function() { - - # if an explicit prefix has been supplied, use it - prefix <- Sys.getenv("RENV_PATHS_PREFIX", unset = NA) - if (!is.na(prefix)) - return(prefix) - - # if the user has requested an automatic prefix, generate it - auto <- Sys.getenv("RENV_PATHS_PREFIX_AUTO", unset = NA) - if (is.na(auto) && getRversion() >= "4.4.0") - auto <- "TRUE" - - if (auto %in% c("TRUE", "True", "true", "1")) - return(renv_bootstrap_platform_prefix_auto()) - - # empty string on failure - "" - - } - - renv_bootstrap_platform_prefix_auto <- function() { - - prefix <- tryCatch(renv_bootstrap_platform_os(), error = identity) - if (inherits(prefix, "error") || prefix %in% "unknown") { - - msg <- paste( - "failed to infer current operating system", - "please file a bug report at https://github.com/rstudio/renv/issues", - sep = "; " - ) - - warning(msg) - - } - - prefix - - } - - renv_bootstrap_platform_os <- function() { - - sysinfo <- Sys.info() - sysname <- sysinfo[["sysname"]] - - # handle Windows + macOS up front - if (sysname == "Windows") - return("windows") - else if (sysname == "Darwin") - return("macos") - - # check for os-release files - for (file in c("/etc/os-release", "/usr/lib/os-release")) - if (file.exists(file)) - return(renv_bootstrap_platform_os_via_os_release(file, sysinfo)) - - # check for redhat-release files - if (file.exists("/etc/redhat-release")) - return(renv_bootstrap_platform_os_via_redhat_release()) - - "unknown" - - } - - renv_bootstrap_platform_os_via_os_release <- function(file, sysinfo) { - - # read /etc/os-release - release <- utils::read.table( - file = file, - sep = "=", - quote = c("\"", "'"), - col.names = c("Key", "Value"), - comment.char = "#", - stringsAsFactors = FALSE - ) - - vars <- as.list(release$Value) - names(vars) <- release$Key - - # get os name - os <- tolower(sysinfo[["sysname"]]) - - # read id - id <- "unknown" - for (field in c("ID", "ID_LIKE")) { - if (field %in% names(vars) && nzchar(vars[[field]])) { - id <- vars[[field]] - break - } - } - - # read version - version <- "unknown" - for (field in c("UBUNTU_CODENAME", "VERSION_CODENAME", "VERSION_ID", "BUILD_ID")) { - if (field %in% names(vars) && nzchar(vars[[field]])) { - version <- vars[[field]] - break - } - } - - # join together - paste(c(os, id, version), collapse = "-") - - } - - renv_bootstrap_platform_os_via_redhat_release <- function() { - - # read /etc/redhat-release - contents <- readLines("/etc/redhat-release", warn = FALSE) - - # infer id - id <- if (grepl("centos", contents, ignore.case = TRUE)) - "centos" - else if (grepl("redhat", contents, ignore.case = TRUE)) - "redhat" - else - "unknown" - - # try to find a version component (very hacky) - version <- "unknown" - - parts <- strsplit(contents, "[[:space:]]")[[1L]] - for (part in parts) { - - nv <- tryCatch(numeric_version(part), error = identity) - if (inherits(nv, "error")) - next - - version <- nv[1, 1] - break - - } - - paste(c("linux", id, version), collapse = "-") - - } - - renv_bootstrap_library_root_name <- function(project) { - - # use project name as-is if requested - asis <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT_ASIS", unset = "FALSE") - if (asis) - return(basename(project)) - - # otherwise, disambiguate based on project's path - id <- substring(renv_bootstrap_hash_text(project), 1L, 8L) - paste(basename(project), id, sep = "-") - - } - - renv_bootstrap_library_root <- function(project) { - - prefix <- renv_bootstrap_profile_prefix() - - path <- Sys.getenv("RENV_PATHS_LIBRARY", unset = NA) - if (!is.na(path)) - return(paste(c(path, prefix), collapse = "/")) - - path <- renv_bootstrap_library_root_impl(project) - if (!is.null(path)) { - name <- renv_bootstrap_library_root_name(project) - return(paste(c(path, prefix, name), collapse = "/")) - } - - renv_bootstrap_paths_renv("library", project = project) - - } - - renv_bootstrap_library_root_impl <- function(project) { - - root <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT", unset = NA) - if (!is.na(root)) - return(root) - - type <- renv_bootstrap_project_type(project) - if (identical(type, "package")) { - userdir <- renv_bootstrap_user_dir() - return(file.path(userdir, "library")) - } - - } - - renv_bootstrap_validate_version <- function(version, description = NULL) { - - # resolve description file - # - # avoid passing lib.loc to `packageDescription()` below, since R will - # use the loaded version of the package by default anyhow. note that - # this function should only be called after 'renv' is loaded - # https://github.com/rstudio/renv/issues/1625 - description <- description %||% packageDescription("renv") - - # check whether requested version 'version' matches loaded version of renv - sha <- attr(version, "sha", exact = TRUE) - valid <- if (!is.null(sha)) - renv_bootstrap_validate_version_dev(sha, description) - else - renv_bootstrap_validate_version_release(version, description) - - if (valid) - return(TRUE) - - # the loaded version of renv doesn't match the requested version; - # give the user instructions on how to proceed - dev <- identical(description[["RemoteType"]], "github") - remote <- if (dev) - paste("rstudio/renv", description[["RemoteSha"]], sep = "@") - else - paste("renv", description[["Version"]], sep = "@") - - # display both loaded version + sha if available - friendly <- renv_bootstrap_version_friendly( - version = description[["Version"]], - sha = if (dev) description[["RemoteSha"]] - ) - - fmt <- heredoc(" - renv %1$s was loaded from project library, but this project is configured to use renv %2$s. - - Use `renv::record(\"%3$s\")` to record renv %1$s in the lockfile. - - Use `renv::restore(packages = \"renv\")` to install renv %2$s into the project library. - ") - catf(fmt, friendly, renv_bootstrap_version_friendly(version), remote) - - FALSE - - } - - renv_bootstrap_validate_version_dev <- function(version, description) { - - expected <- description[["RemoteSha"]] - if (!is.character(expected)) - return(FALSE) - - pattern <- sprintf("^\\Q%s\\E", version) - grepl(pattern, expected, perl = TRUE) - - } - - renv_bootstrap_validate_version_release <- function(version, description) { - expected <- description[["Version"]] - is.character(expected) && identical(expected, version) - } - - renv_bootstrap_hash_text <- function(text) { - - hashfile <- tempfile("renv-hash-") - on.exit(unlink(hashfile), add = TRUE) - - writeLines(text, con = hashfile) - tools::md5sum(hashfile) - - } - - renv_bootstrap_load <- function(project, libpath, version) { - - # try to load renv from the project library - if (!requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) - return(FALSE) - - # warn if the version of renv loaded does not match - renv_bootstrap_validate_version(version) - - # execute renv load hooks, if any - hooks <- getHook("renv::autoload") - for (hook in hooks) - if (is.function(hook)) - tryCatch(hook(), error = warnify) - - # load the project - renv::load(project) - - TRUE - - } - - renv_bootstrap_profile_load <- function(project) { - - # if RENV_PROFILE is already set, just use that - profile <- Sys.getenv("RENV_PROFILE", unset = NA) - if (!is.na(profile) && nzchar(profile)) - return(profile) - - # check for a profile file (nothing to do if it doesn't exist) - path <- renv_bootstrap_paths_renv("profile", profile = FALSE, project = project) - if (!file.exists(path)) - return(NULL) - - # read the profile, and set it if it exists - contents <- readLines(path, warn = FALSE) - if (length(contents) == 0L) - return(NULL) - - # set RENV_PROFILE - profile <- contents[[1L]] - if (!profile %in% c("", "default")) - Sys.setenv(RENV_PROFILE = profile) - - profile - - } - - renv_bootstrap_profile_prefix <- function() { - profile <- renv_bootstrap_profile_get() - if (!is.null(profile)) - return(file.path("profiles", profile, "renv")) - } - - renv_bootstrap_profile_get <- function() { - profile <- Sys.getenv("RENV_PROFILE", unset = "") - renv_bootstrap_profile_normalize(profile) - } - - renv_bootstrap_profile_set <- function(profile) { - profile <- renv_bootstrap_profile_normalize(profile) - if (is.null(profile)) - Sys.unsetenv("RENV_PROFILE") - else - Sys.setenv(RENV_PROFILE = profile) - } - - renv_bootstrap_profile_normalize <- function(profile) { - - if (is.null(profile) || profile %in% c("", "default")) - return(NULL) - - profile - - } - - renv_bootstrap_path_absolute <- function(path) { - - substr(path, 1L, 1L) %in% c("~", "/", "\\") || ( - substr(path, 1L, 1L) %in% c(letters, LETTERS) && - substr(path, 2L, 3L) %in% c(":/", ":\\") - ) - - } - - renv_bootstrap_paths_renv <- function(..., profile = TRUE, project = NULL) { - renv <- Sys.getenv("RENV_PATHS_RENV", unset = "renv") - root <- if (renv_bootstrap_path_absolute(renv)) NULL else project - prefix <- if (profile) renv_bootstrap_profile_prefix() - components <- c(root, renv, prefix, ...) - paste(components, collapse = "/") - } - - renv_bootstrap_project_type <- function(path) { - - descpath <- file.path(path, "DESCRIPTION") - if (!file.exists(descpath)) - return("unknown") - - desc <- tryCatch( - read.dcf(descpath, all = TRUE), - error = identity - ) - - if (inherits(desc, "error")) - return("unknown") - - type <- desc$Type - if (!is.null(type)) - return(tolower(type)) - - package <- desc$Package - if (!is.null(package)) - return("package") - - "unknown" - - } - - renv_bootstrap_user_dir <- function() { - dir <- renv_bootstrap_user_dir_impl() - path.expand(chartr("\\", "/", dir)) - } - - renv_bootstrap_user_dir_impl <- function() { - - # use local override if set - override <- getOption("renv.userdir.override") - if (!is.null(override)) - return(override) - - # use R_user_dir if available - tools <- asNamespace("tools") - if (is.function(tools$R_user_dir)) - return(tools$R_user_dir("renv", "cache")) - - # try using our own backfill for older versions of R - envvars <- c("R_USER_CACHE_DIR", "XDG_CACHE_HOME") - for (envvar in envvars) { - root <- Sys.getenv(envvar, unset = NA) - if (!is.na(root)) - return(file.path(root, "R/renv")) - } - - # use platform-specific default fallbacks - if (Sys.info()[["sysname"]] == "Windows") - file.path(Sys.getenv("LOCALAPPDATA"), "R/cache/R/renv") - else if (Sys.info()[["sysname"]] == "Darwin") - "~/Library/Caches/org.R-project.R/R/renv" - else - "~/.cache/R/renv" - - } - - renv_bootstrap_version_friendly <- function(version, shafmt = NULL, sha = NULL) { - sha <- sha %||% attr(version, "sha", exact = TRUE) - parts <- c(version, sprintf(shafmt %||% " [sha: %s]", substring(sha, 1L, 7L))) - paste(parts, collapse = "") - } - - renv_bootstrap_exec <- function(project, libpath, version) { - if (!renv_bootstrap_load(project, libpath, version)) - renv_bootstrap_run(project, libpath, version) - } - - renv_bootstrap_run <- function(project, libpath, version) { - - # perform bootstrap - bootstrap(version, libpath) - - # exit early if we're just testing bootstrap - if (!is.na(Sys.getenv("RENV_BOOTSTRAP_INSTALL_ONLY", unset = NA))) - return(TRUE) - - # try again to load - if (requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) { - return(renv::load(project = project)) - } - - # failed to download or load renv; warn the user - msg <- c( - "Failed to find an renv installation: the project will not be loaded.", - "Use `renv::activate()` to re-initialize the project." - ) - - warning(paste(msg, collapse = "\n"), call. = FALSE) - - } - - renv_json_read <- function(file = NULL, text = NULL) { - - jlerr <- NULL - - # if jsonlite is loaded, use that instead - if ("jsonlite" %in% loadedNamespaces()) { - - json <- tryCatch(renv_json_read_jsonlite(file, text), error = identity) - if (!inherits(json, "error")) - return(json) - - jlerr <- json - - } - - # otherwise, fall back to the default JSON reader - json <- tryCatch(renv_json_read_default(file, text), error = identity) - if (!inherits(json, "error")) - return(json) - - # report an error - if (!is.null(jlerr)) - stop(jlerr) - else - stop(json) - - } - - renv_json_read_jsonlite <- function(file = NULL, text = NULL) { - text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n") - jsonlite::fromJSON(txt = text, simplifyVector = FALSE) - } - - renv_json_read_patterns <- function() { - - list( - - # objects - list("{", "\t\n\tobject(\t\n\t", TRUE), - list("}", "\t\n\t)\t\n\t", TRUE), - - # arrays - list("[", "\t\n\tarray(\t\n\t", TRUE), - list("]", "\n\t\n)\n\t\n", TRUE), - - # maps - list(":", "\t\n\t=\t\n\t", TRUE), - - # newlines - list("\\u000a", "\n", FALSE) - - ) - - } - - renv_json_read_envir <- function() { - - envir <- new.env(parent = emptyenv()) - - envir[["+"]] <- `+` - envir[["-"]] <- `-` - - envir[["object"]] <- function(...) { - result <- list(...) - names(result) <- as.character(names(result)) - result - } - - envir[["array"]] <- list - - envir[["true"]] <- TRUE - envir[["false"]] <- FALSE - envir[["null"]] <- NULL - - envir - - } - - renv_json_read_remap <- function(object, patterns) { - - # repair names if necessary - if (!is.null(names(object))) { - - nms <- names(object) - for (pattern in patterns) - nms <- gsub(pattern[[2L]], pattern[[1L]], nms, fixed = TRUE) - names(object) <- nms - - } - - # repair strings if necessary - if (is.character(object)) { - for (pattern in patterns) - object <- gsub(pattern[[2L]], pattern[[1L]], object, fixed = TRUE) - } - - # recurse for other objects - if (is.recursive(object)) - for (i in seq_along(object)) - object[i] <- list(renv_json_read_remap(object[[i]], patterns)) - - # return remapped object - object - - } - - renv_json_read_default <- function(file = NULL, text = NULL) { - - # read json text - text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n") - - # convert into something the R parser will understand - patterns <- renv_json_read_patterns() - transformed <- text - for (pattern in patterns) - transformed <- gsub(pattern[[1L]], pattern[[2L]], transformed, fixed = TRUE) - - # parse it - rfile <- tempfile("renv-json-", fileext = ".R") - on.exit(unlink(rfile), add = TRUE) - writeLines(transformed, con = rfile) - json <- parse(rfile, keep.source = FALSE, srcfile = NULL)[[1L]] - - # evaluate in safe environment - result <- eval(json, envir = renv_json_read_envir()) - - # fix up strings if necessary -- do so only with reversible patterns - patterns <- Filter(function(pattern) pattern[[3L]], patterns) - renv_json_read_remap(result, patterns) - - } - - - # load the renv profile, if any - renv_bootstrap_profile_load(project) - - # construct path to library root - root <- renv_bootstrap_library_root(project) - - # construct library prefix for platform - prefix <- renv_bootstrap_platform_prefix() - - # construct full libpath - libpath <- file.path(root, prefix) - - # run bootstrap code - renv_bootstrap_exec(project, libpath, version) - - invisible() - -}) + +local({ + + # the requested version of renv + version <- "1.1.5" + attr(version, "sha") <- NULL + + # the project directory + project <- Sys.getenv("RENV_PROJECT") + if (!nzchar(project)) + project <- getwd() + + # use start-up diagnostics if enabled + diagnostics <- Sys.getenv("RENV_STARTUP_DIAGNOSTICS", unset = "FALSE") + if (diagnostics) { + start <- Sys.time() + profile <- tempfile("renv-startup-", fileext = ".Rprof") + utils::Rprof(profile) + on.exit({ + utils::Rprof(NULL) + elapsed <- signif(difftime(Sys.time(), start, units = "auto"), digits = 2L) + writeLines(sprintf("- renv took %s to run the autoloader.", format(elapsed))) + writeLines(sprintf("- Profile: %s", profile)) + print(utils::summaryRprof(profile)) + }, add = TRUE) + } + + # figure out whether the autoloader is enabled + enabled <- local({ + + # first, check config option + override <- getOption("renv.config.autoloader.enabled") + if (!is.null(override)) + return(override) + + # if we're being run in a context where R_LIBS is already set, + # don't load -- presumably we're being run as a sub-process and + # the parent process has already set up library paths for us + rcmd <- Sys.getenv("R_CMD", unset = NA) + rlibs <- Sys.getenv("R_LIBS", unset = NA) + if (!is.na(rlibs) && !is.na(rcmd)) + return(FALSE) + + # next, check environment variables + # prefer using the configuration one in the future + envvars <- c( + "RENV_CONFIG_AUTOLOADER_ENABLED", + "RENV_AUTOLOADER_ENABLED", + "RENV_ACTIVATE_PROJECT" + ) + + for (envvar in envvars) { + envval <- Sys.getenv(envvar, unset = NA) + if (!is.na(envval)) + return(tolower(envval) %in% c("true", "t", "1")) + } + + # enable by default + TRUE + + }) + + # bail if we're not enabled + if (!enabled) { + + # if we're not enabled, we might still need to manually load + # the user profile here + profile <- Sys.getenv("R_PROFILE_USER", unset = "~/.Rprofile") + if (file.exists(profile)) { + cfg <- Sys.getenv("RENV_CONFIG_USER_PROFILE", unset = "TRUE") + if (tolower(cfg) %in% c("true", "t", "1")) + sys.source(profile, envir = globalenv()) + } + + return(FALSE) + + } + + # avoid recursion + if (identical(getOption("renv.autoloader.running"), TRUE)) { + warning("ignoring recursive attempt to run renv autoloader") + return(invisible(TRUE)) + } + + # signal that we're loading renv during R startup + options(renv.autoloader.running = TRUE) + on.exit(options(renv.autoloader.running = NULL), add = TRUE) + + # signal that we've consented to use renv + options(renv.consent = TRUE) + + # load the 'utils' package eagerly -- this ensures that renv shims, which + # mask 'utils' packages, will come first on the search path + library(utils, lib.loc = .Library) + + # unload renv if it's already been loaded + if ("renv" %in% loadedNamespaces()) + unloadNamespace("renv") + + # load bootstrap tools + ansify <- function(text) { + if (renv_ansify_enabled()) + renv_ansify_enhanced(text) + else + renv_ansify_default(text) + } + + renv_ansify_enabled <- function() { + + override <- Sys.getenv("RENV_ANSIFY_ENABLED", unset = NA) + if (!is.na(override)) + return(as.logical(override)) + + pane <- Sys.getenv("RSTUDIO_CHILD_PROCESS_PANE", unset = NA) + if (identical(pane, "build")) + return(FALSE) + + testthat <- Sys.getenv("TESTTHAT", unset = "false") + if (tolower(testthat) %in% "true") + return(FALSE) + + iderun <- Sys.getenv("R_CLI_HAS_HYPERLINK_IDE_RUN", unset = "false") + if (tolower(iderun) %in% "false") + return(FALSE) + + TRUE + + } + + renv_ansify_default <- function(text) { + text + } + + renv_ansify_enhanced <- function(text) { + + # R help links + pattern <- "`\\?(renv::(?:[^`])+)`" + replacement <- "`\033]8;;x-r-help:\\1\a?\\1\033]8;;\a`" + text <- gsub(pattern, replacement, text, perl = TRUE) + + # runnable code + pattern <- "`(renv::(?:[^`])+)`" + replacement <- "`\033]8;;x-r-run:\\1\a\\1\033]8;;\a`" + text <- gsub(pattern, replacement, text, perl = TRUE) + + # return ansified text + text + + } + + renv_ansify_init <- function() { + + envir <- renv_envir_self() + if (renv_ansify_enabled()) + assign("ansify", renv_ansify_enhanced, envir = envir) + else + assign("ansify", renv_ansify_default, envir = envir) + + } + + `%||%` <- function(x, y) { + if (is.null(x)) y else x + } + + catf <- function(fmt, ..., appendLF = TRUE) { + + quiet <- getOption("renv.bootstrap.quiet", default = FALSE) + if (quiet) + return(invisible()) + + msg <- sprintf(fmt, ...) + cat(msg, file = stdout(), sep = if (appendLF) "\n" else "") + + invisible(msg) + + } + + header <- function(label, + ..., + prefix = "#", + suffix = "-", + n = min(getOption("width"), 78)) + { + label <- sprintf(label, ...) + n <- max(n - nchar(label) - nchar(prefix) - 2L, 8L) + if (n <= 0) + return(paste(prefix, label)) + + tail <- paste(rep.int(suffix, n), collapse = "") + paste0(prefix, " ", label, " ", tail) + + } + + heredoc <- function(text, leave = 0) { + + # remove leading, trailing whitespace + trimmed <- gsub("^\\s*\\n|\\n\\s*$", "", text) + + # split into lines + lines <- strsplit(trimmed, "\n", fixed = TRUE)[[1L]] + + # compute common indent + indent <- regexpr("[^[:space:]]", lines) + common <- min(setdiff(indent, -1L)) - leave + text <- paste(substring(lines, common), collapse = "\n") + + # substitute in ANSI links for executable renv code + ansify(text) + + } + + bootstrap <- function(version, library) { + + friendly <- renv_bootstrap_version_friendly(version) + section <- header(sprintf("Bootstrapping renv %s", friendly)) + catf(section) + + # attempt to download renv + catf("- Downloading renv ... ", appendLF = FALSE) + withCallingHandlers( + tarball <- renv_bootstrap_download(version), + error = function(err) { + catf("FAILED") + stop("failed to download:\n", conditionMessage(err)) + } + ) + catf("OK") + on.exit(unlink(tarball), add = TRUE) + + # now attempt to install + catf("- Installing renv ... ", appendLF = FALSE) + withCallingHandlers( + status <- renv_bootstrap_install(version, tarball, library), + error = function(err) { + catf("FAILED") + stop("failed to install:\n", conditionMessage(err)) + } + ) + catf("OK") + + # add empty line to break up bootstrapping from normal output + catf("") + + return(invisible()) + } + + renv_bootstrap_tests_running <- function() { + getOption("renv.tests.running", default = FALSE) + } + + renv_bootstrap_repos <- function() { + + # get CRAN repository + cran <- getOption("renv.repos.cran", "https://cloud.r-project.org") + + # check for repos override + repos <- Sys.getenv("RENV_CONFIG_REPOS_OVERRIDE", unset = NA) + if (!is.na(repos)) { + + # check for RSPM; if set, use a fallback repository for renv + rspm <- Sys.getenv("RSPM", unset = NA) + if (identical(rspm, repos)) + repos <- c(RSPM = rspm, CRAN = cran) + + return(repos) + + } + + # check for lockfile repositories + repos <- tryCatch(renv_bootstrap_repos_lockfile(), error = identity) + if (!inherits(repos, "error") && length(repos)) + return(repos) + + # retrieve current repos + repos <- getOption("repos") + + # ensure @CRAN@ entries are resolved + repos[repos == "@CRAN@"] <- cran + + # add in renv.bootstrap.repos if set + default <- c(FALLBACK = "https://cloud.r-project.org") + extra <- getOption("renv.bootstrap.repos", default = default) + repos <- c(repos, extra) + + # remove duplicates that might've snuck in + dupes <- duplicated(repos) | duplicated(names(repos)) + repos[!dupes] + + } + + renv_bootstrap_repos_lockfile <- function() { + + lockpath <- Sys.getenv("RENV_PATHS_LOCKFILE", unset = "renv.lock") + if (!file.exists(lockpath)) + return(NULL) + + lockfile <- tryCatch(renv_json_read(lockpath), error = identity) + if (inherits(lockfile, "error")) { + warning(lockfile) + return(NULL) + } + + repos <- lockfile$R$Repositories + if (length(repos) == 0) + return(NULL) + + keys <- vapply(repos, `[[`, "Name", FUN.VALUE = character(1)) + vals <- vapply(repos, `[[`, "URL", FUN.VALUE = character(1)) + names(vals) <- keys + + return(vals) + + } + + renv_bootstrap_download <- function(version) { + + sha <- attr(version, "sha", exact = TRUE) + + methods <- if (!is.null(sha)) { + + # attempting to bootstrap a development version of renv + c( + function() renv_bootstrap_download_tarball(sha), + function() renv_bootstrap_download_github(sha) + ) + + } else { + + # attempting to bootstrap a release version of renv + c( + function() renv_bootstrap_download_tarball(version), + function() renv_bootstrap_download_cran_latest(version), + function() renv_bootstrap_download_cran_archive(version) + ) + + } + + for (method in methods) { + path <- tryCatch(method(), error = identity) + if (is.character(path) && file.exists(path)) + return(path) + } + + stop("All download methods failed") + + } + + renv_bootstrap_download_impl <- function(url, destfile) { + + mode <- "wb" + + # https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17715 + fixup <- + Sys.info()[["sysname"]] == "Windows" && + substring(url, 1L, 5L) == "file:" + + if (fixup) + mode <- "w+b" + + args <- list( + url = url, + destfile = destfile, + mode = mode, + quiet = TRUE + ) + + if ("headers" %in% names(formals(utils::download.file))) { + headers <- renv_bootstrap_download_custom_headers(url) + if (length(headers) && is.character(headers)) + args$headers <- headers + } + + do.call(utils::download.file, args) + + } + + renv_bootstrap_download_custom_headers <- function(url) { + + headers <- getOption("renv.download.headers") + if (is.null(headers)) + return(character()) + + if (!is.function(headers)) + stopf("'renv.download.headers' is not a function") + + headers <- headers(url) + if (length(headers) == 0L) + return(character()) + + if (is.list(headers)) + headers <- unlist(headers, recursive = FALSE, use.names = TRUE) + + ok <- + is.character(headers) && + is.character(names(headers)) && + all(nzchar(names(headers))) + + if (!ok) + stop("invocation of 'renv.download.headers' did not return a named character vector") + + headers + + } + + renv_bootstrap_download_cran_latest <- function(version) { + + spec <- renv_bootstrap_download_cran_latest_find(version) + type <- spec$type + repos <- spec$repos + + baseurl <- utils::contrib.url(repos = repos, type = type) + ext <- if (identical(type, "source")) + ".tar.gz" + else if (Sys.info()[["sysname"]] == "Windows") + ".zip" + else + ".tgz" + name <- sprintf("renv_%s%s", version, ext) + url <- paste(baseurl, name, sep = "/") + + destfile <- file.path(tempdir(), name) + status <- tryCatch( + renv_bootstrap_download_impl(url, destfile), + condition = identity + ) + + if (inherits(status, "condition")) + return(FALSE) + + # report success and return + destfile + + } + + renv_bootstrap_download_cran_latest_find <- function(version) { + + # check whether binaries are supported on this system + binary <- + getOption("renv.bootstrap.binary", default = TRUE) && + !identical(.Platform$pkgType, "source") && + !identical(getOption("pkgType"), "source") && + Sys.info()[["sysname"]] %in% c("Darwin", "Windows") + + types <- c(if (binary) "binary", "source") + + # iterate over types + repositories + for (type in types) { + for (repos in renv_bootstrap_repos()) { + + # build arguments for utils::available.packages() call + args <- list(type = type, repos = repos) + + # add custom headers if available -- note that + # utils::available.packages() will pass this to download.file() + if ("headers" %in% names(formals(utils::download.file))) { + headers <- renv_bootstrap_download_custom_headers(repos) + if (length(headers) && is.character(headers)) + args$headers <- headers + } + + # retrieve package database + db <- tryCatch( + as.data.frame( + do.call(utils::available.packages, args), + stringsAsFactors = FALSE + ), + error = identity + ) + + if (inherits(db, "error")) + next + + # check for compatible entry + entry <- db[db$Package %in% "renv" & db$Version %in% version, ] + if (nrow(entry) == 0) + next + + # found it; return spec to caller + spec <- list(entry = entry, type = type, repos = repos) + return(spec) + + } + } + + # if we got here, we failed to find renv + fmt <- "renv %s is not available from your declared package repositories" + stop(sprintf(fmt, version)) + + } + + renv_bootstrap_download_cran_archive <- function(version) { + + name <- sprintf("renv_%s.tar.gz", version) + repos <- renv_bootstrap_repos() + urls <- file.path(repos, "src/contrib/Archive/renv", name) + destfile <- file.path(tempdir(), name) + + for (url in urls) { + + status <- tryCatch( + renv_bootstrap_download_impl(url, destfile), + condition = identity + ) + + if (identical(status, 0L)) + return(destfile) + + } + + return(FALSE) + + } + + renv_bootstrap_download_tarball <- function(version) { + + # if the user has provided the path to a tarball via + # an environment variable, then use it + tarball <- Sys.getenv("RENV_BOOTSTRAP_TARBALL", unset = NA) + if (is.na(tarball)) + return() + + # allow directories + if (dir.exists(tarball)) { + name <- sprintf("renv_%s.tar.gz", version) + tarball <- file.path(tarball, name) + } + + # bail if it doesn't exist + if (!file.exists(tarball)) { + + # let the user know we weren't able to honour their request + fmt <- "- RENV_BOOTSTRAP_TARBALL is set (%s) but does not exist." + msg <- sprintf(fmt, tarball) + warning(msg) + + # bail + return() + + } + + catf("- Using local tarball '%s'.", tarball) + tarball + + } + + renv_bootstrap_github_token <- function() { + for (envvar in c("GITHUB_TOKEN", "GITHUB_PAT", "GH_TOKEN")) { + envval <- Sys.getenv(envvar, unset = NA) + if (!is.na(envval)) + return(envval) + } + } + + renv_bootstrap_download_github <- function(version) { + + enabled <- Sys.getenv("RENV_BOOTSTRAP_FROM_GITHUB", unset = "TRUE") + if (!identical(enabled, "TRUE")) + return(FALSE) + + # prepare download options + token <- renv_bootstrap_github_token() + if (is.null(token)) + token <- "" + + if (nzchar(Sys.which("curl")) && nzchar(token)) { + fmt <- "--location --fail --header \"Authorization: token %s\"" + extra <- sprintf(fmt, token) + saved <- options("download.file.method", "download.file.extra") + options(download.file.method = "curl", download.file.extra = extra) + on.exit(do.call(base::options, saved), add = TRUE) + } else if (nzchar(Sys.which("wget")) && nzchar(token)) { + fmt <- "--header=\"Authorization: token %s\"" + extra <- sprintf(fmt, token) + saved <- options("download.file.method", "download.file.extra") + options(download.file.method = "wget", download.file.extra = extra) + on.exit(do.call(base::options, saved), add = TRUE) + } + + url <- file.path("https://api.github.com/repos/rstudio/renv/tarball", version) + name <- sprintf("renv_%s.tar.gz", version) + destfile <- file.path(tempdir(), name) + + status <- tryCatch( + renv_bootstrap_download_impl(url, destfile), + condition = identity + ) + + if (!identical(status, 0L)) + return(FALSE) + + renv_bootstrap_download_augment(destfile) + + return(destfile) + + } + + # Add Sha to DESCRIPTION. This is stop gap until #890, after which we + # can use renv::install() to fully capture metadata. + renv_bootstrap_download_augment <- function(destfile) { + sha <- renv_bootstrap_git_extract_sha1_tar(destfile) + if (is.null(sha)) { + return() + } + + # Untar + tempdir <- tempfile("renv-github-") + on.exit(unlink(tempdir, recursive = TRUE), add = TRUE) + untar(destfile, exdir = tempdir) + pkgdir <- dir(tempdir, full.names = TRUE)[[1]] + + # Modify description + desc_path <- file.path(pkgdir, "DESCRIPTION") + desc_lines <- readLines(desc_path) + remotes_fields <- c( + "RemoteType: github", + "RemoteHost: api.github.com", + "RemoteRepo: renv", + "RemoteUsername: rstudio", + "RemotePkgRef: rstudio/renv", + paste("RemoteRef: ", sha), + paste("RemoteSha: ", sha) + ) + writeLines(c(desc_lines[desc_lines != ""], remotes_fields), con = desc_path) + + # Re-tar + local({ + old <- setwd(tempdir) + on.exit(setwd(old), add = TRUE) + + tar(destfile, compression = "gzip") + }) + invisible() + } + + # Extract the commit hash from a git archive. Git archives include the SHA1 + # hash as the comment field of the tarball pax extended header + # (see https://www.kernel.org/pub/software/scm/git/docs/git-archive.html) + # For GitHub archives this should be the first header after the default one + # (512 byte) header. + renv_bootstrap_git_extract_sha1_tar <- function(bundle) { + + # open the bundle for reading + # We use gzcon for everything because (from ?gzcon) + # > Reading from a connection which does not supply a 'gzip' magic + # > header is equivalent to reading from the original connection + conn <- gzcon(file(bundle, open = "rb", raw = TRUE)) + on.exit(close(conn)) + + # The default pax header is 512 bytes long and the first pax extended header + # with the comment should be 51 bytes long + # `52 comment=` (11 chars) + 40 byte SHA1 hash + len <- 0x200 + 0x33 + res <- rawToChar(readBin(conn, "raw", n = len)[0x201:len]) + + if (grepl("^52 comment=", res)) { + sub("52 comment=", "", res) + } else { + NULL + } + } + + renv_bootstrap_install <- function(version, tarball, library) { + + # attempt to install it into project library + dir.create(library, showWarnings = FALSE, recursive = TRUE) + output <- renv_bootstrap_install_impl(library, tarball) + + # check for successful install + status <- attr(output, "status") + if (is.null(status) || identical(status, 0L)) + return(status) + + # an error occurred; report it + header <- "installation of renv failed" + lines <- paste(rep.int("=", nchar(header)), collapse = "") + text <- paste(c(header, lines, output), collapse = "\n") + stop(text) + + } + + renv_bootstrap_install_impl <- function(library, tarball) { + + # invoke using system2 so we can capture and report output + bin <- R.home("bin") + exe <- if (Sys.info()[["sysname"]] == "Windows") "R.exe" else "R" + R <- file.path(bin, exe) + + args <- c( + "--vanilla", "CMD", "INSTALL", "--no-multiarch", + "-l", shQuote(path.expand(library)), + shQuote(path.expand(tarball)) + ) + + system2(R, args, stdout = TRUE, stderr = TRUE) + + } + + renv_bootstrap_platform_prefix_default <- function() { + + # read version component + version <- Sys.getenv("RENV_PATHS_VERSION", unset = "R-%v") + + # expand placeholders + placeholders <- list( + list("%v", format(getRversion()[1, 1:2])), + list("%V", format(getRversion()[1, 1:3])) + ) + + for (placeholder in placeholders) + version <- gsub(placeholder[[1L]], placeholder[[2L]], version, fixed = TRUE) + + # include SVN revision for development versions of R + # (to avoid sharing platform-specific artefacts with released versions of R) + devel <- + identical(R.version[["status"]], "Under development (unstable)") || + identical(R.version[["nickname"]], "Unsuffered Consequences") + + if (devel) + version <- paste(version, R.version[["svn rev"]], sep = "-r") + + version + + } + + renv_bootstrap_platform_prefix <- function() { + + # construct version prefix + version <- renv_bootstrap_platform_prefix_default() + + # build list of path components + components <- c(version, R.version$platform) + + # include prefix if provided by user + prefix <- renv_bootstrap_platform_prefix_impl() + if (!is.na(prefix) && nzchar(prefix)) + components <- c(prefix, components) + + # build prefix + paste(components, collapse = "/") + + } + + renv_bootstrap_platform_prefix_impl <- function() { + + # if an explicit prefix has been supplied, use it + prefix <- Sys.getenv("RENV_PATHS_PREFIX", unset = NA) + if (!is.na(prefix)) + return(prefix) + + # if the user has requested an automatic prefix, generate it + auto <- Sys.getenv("RENV_PATHS_PREFIX_AUTO", unset = NA) + if (is.na(auto) && getRversion() >= "4.4.0") + auto <- "TRUE" + + if (auto %in% c("TRUE", "True", "true", "1")) + return(renv_bootstrap_platform_prefix_auto()) + + # empty string on failure + "" + + } + + renv_bootstrap_platform_prefix_auto <- function() { + + prefix <- tryCatch(renv_bootstrap_platform_os(), error = identity) + if (inherits(prefix, "error") || prefix %in% "unknown") { + + msg <- paste( + "failed to infer current operating system", + "please file a bug report at https://github.com/rstudio/renv/issues", + sep = "; " + ) + + warning(msg) + + } + + prefix + + } + + renv_bootstrap_platform_os <- function() { + + sysinfo <- Sys.info() + sysname <- sysinfo[["sysname"]] + + # handle Windows + macOS up front + if (sysname == "Windows") + return("windows") + else if (sysname == "Darwin") + return("macos") + + # check for os-release files + for (file in c("/etc/os-release", "/usr/lib/os-release")) + if (file.exists(file)) + return(renv_bootstrap_platform_os_via_os_release(file, sysinfo)) + + # check for redhat-release files + if (file.exists("/etc/redhat-release")) + return(renv_bootstrap_platform_os_via_redhat_release()) + + "unknown" + + } + + renv_bootstrap_platform_os_via_os_release <- function(file, sysinfo) { + + # read /etc/os-release + release <- utils::read.table( + file = file, + sep = "=", + quote = c("\"", "'"), + col.names = c("Key", "Value"), + comment.char = "#", + stringsAsFactors = FALSE + ) + + vars <- as.list(release$Value) + names(vars) <- release$Key + + # get os name + os <- tolower(sysinfo[["sysname"]]) + + # read id + id <- "unknown" + for (field in c("ID", "ID_LIKE")) { + if (field %in% names(vars) && nzchar(vars[[field]])) { + id <- vars[[field]] + break + } + } + + # read version + version <- "unknown" + for (field in c("UBUNTU_CODENAME", "VERSION_CODENAME", "VERSION_ID", "BUILD_ID")) { + if (field %in% names(vars) && nzchar(vars[[field]])) { + version <- vars[[field]] + break + } + } + + # join together + paste(c(os, id, version), collapse = "-") + + } + + renv_bootstrap_platform_os_via_redhat_release <- function() { + + # read /etc/redhat-release + contents <- readLines("/etc/redhat-release", warn = FALSE) + + # infer id + id <- if (grepl("centos", contents, ignore.case = TRUE)) + "centos" + else if (grepl("redhat", contents, ignore.case = TRUE)) + "redhat" + else + "unknown" + + # try to find a version component (very hacky) + version <- "unknown" + + parts <- strsplit(contents, "[[:space:]]")[[1L]] + for (part in parts) { + + nv <- tryCatch(numeric_version(part), error = identity) + if (inherits(nv, "error")) + next + + version <- nv[1, 1] + break + + } + + paste(c("linux", id, version), collapse = "-") + + } + + renv_bootstrap_library_root_name <- function(project) { + + # use project name as-is if requested + asis <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT_ASIS", unset = "FALSE") + if (asis) + return(basename(project)) + + # otherwise, disambiguate based on project's path + id <- substring(renv_bootstrap_hash_text(project), 1L, 8L) + paste(basename(project), id, sep = "-") + + } + + renv_bootstrap_library_root <- function(project) { + + prefix <- renv_bootstrap_profile_prefix() + + path <- Sys.getenv("RENV_PATHS_LIBRARY", unset = NA) + if (!is.na(path)) + return(paste(c(path, prefix), collapse = "/")) + + path <- renv_bootstrap_library_root_impl(project) + if (!is.null(path)) { + name <- renv_bootstrap_library_root_name(project) + return(paste(c(path, prefix, name), collapse = "/")) + } + + renv_bootstrap_paths_renv("library", project = project) + + } + + renv_bootstrap_library_root_impl <- function(project) { + + root <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT", unset = NA) + if (!is.na(root)) + return(root) + + type <- renv_bootstrap_project_type(project) + if (identical(type, "package")) { + userdir <- renv_bootstrap_user_dir() + return(file.path(userdir, "library")) + } + + } + + renv_bootstrap_validate_version <- function(version, description = NULL) { + + # resolve description file + # + # avoid passing lib.loc to `packageDescription()` below, since R will + # use the loaded version of the package by default anyhow. note that + # this function should only be called after 'renv' is loaded + # https://github.com/rstudio/renv/issues/1625 + description <- description %||% packageDescription("renv") + + # check whether requested version 'version' matches loaded version of renv + sha <- attr(version, "sha", exact = TRUE) + valid <- if (!is.null(sha)) + renv_bootstrap_validate_version_dev(sha, description) + else + renv_bootstrap_validate_version_release(version, description) + + if (valid) + return(TRUE) + + # the loaded version of renv doesn't match the requested version; + # give the user instructions on how to proceed + dev <- identical(description[["RemoteType"]], "github") + remote <- if (dev) + paste("rstudio/renv", description[["RemoteSha"]], sep = "@") + else + paste("renv", description[["Version"]], sep = "@") + + # display both loaded version + sha if available + friendly <- renv_bootstrap_version_friendly( + version = description[["Version"]], + sha = if (dev) description[["RemoteSha"]] + ) + + fmt <- heredoc(" + renv %1$s was loaded from project library, but this project is configured to use renv %2$s. + - Use `renv::record(\"%3$s\")` to record renv %1$s in the lockfile. + - Use `renv::restore(packages = \"renv\")` to install renv %2$s into the project library. + ") + catf(fmt, friendly, renv_bootstrap_version_friendly(version), remote) + + FALSE + + } + + renv_bootstrap_validate_version_dev <- function(version, description) { + + expected <- description[["RemoteSha"]] + if (!is.character(expected)) + return(FALSE) + + pattern <- sprintf("^\\Q%s\\E", version) + grepl(pattern, expected, perl = TRUE) + + } + + renv_bootstrap_validate_version_release <- function(version, description) { + expected <- description[["Version"]] + is.character(expected) && identical(expected, version) + } + + renv_bootstrap_hash_text <- function(text) { + + hashfile <- tempfile("renv-hash-") + on.exit(unlink(hashfile), add = TRUE) + + writeLines(text, con = hashfile) + tools::md5sum(hashfile) + + } + + renv_bootstrap_load <- function(project, libpath, version) { + + # try to load renv from the project library + if (!requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) + return(FALSE) + + # warn if the version of renv loaded does not match + renv_bootstrap_validate_version(version) + + # execute renv load hooks, if any + hooks <- getHook("renv::autoload") + for (hook in hooks) + if (is.function(hook)) + tryCatch(hook(), error = warnify) + + # load the project + renv::load(project) + + TRUE + + } + + renv_bootstrap_profile_load <- function(project) { + + # if RENV_PROFILE is already set, just use that + profile <- Sys.getenv("RENV_PROFILE", unset = NA) + if (!is.na(profile) && nzchar(profile)) + return(profile) + + # check for a profile file (nothing to do if it doesn't exist) + path <- renv_bootstrap_paths_renv("profile", profile = FALSE, project = project) + if (!file.exists(path)) + return(NULL) + + # read the profile, and set it if it exists + contents <- readLines(path, warn = FALSE) + if (length(contents) == 0L) + return(NULL) + + # set RENV_PROFILE + profile <- contents[[1L]] + if (!profile %in% c("", "default")) + Sys.setenv(RENV_PROFILE = profile) + + profile + + } + + renv_bootstrap_profile_prefix <- function() { + profile <- renv_bootstrap_profile_get() + if (!is.null(profile)) + return(file.path("profiles", profile, "renv")) + } + + renv_bootstrap_profile_get <- function() { + profile <- Sys.getenv("RENV_PROFILE", unset = "") + renv_bootstrap_profile_normalize(profile) + } + + renv_bootstrap_profile_set <- function(profile) { + profile <- renv_bootstrap_profile_normalize(profile) + if (is.null(profile)) + Sys.unsetenv("RENV_PROFILE") + else + Sys.setenv(RENV_PROFILE = profile) + } + + renv_bootstrap_profile_normalize <- function(profile) { + + if (is.null(profile) || profile %in% c("", "default")) + return(NULL) + + profile + + } + + renv_bootstrap_path_absolute <- function(path) { + + substr(path, 1L, 1L) %in% c("~", "/", "\\") || ( + substr(path, 1L, 1L) %in% c(letters, LETTERS) && + substr(path, 2L, 3L) %in% c(":/", ":\\") + ) + + } + + renv_bootstrap_paths_renv <- function(..., profile = TRUE, project = NULL) { + renv <- Sys.getenv("RENV_PATHS_RENV", unset = "renv") + root <- if (renv_bootstrap_path_absolute(renv)) NULL else project + prefix <- if (profile) renv_bootstrap_profile_prefix() + components <- c(root, renv, prefix, ...) + paste(components, collapse = "/") + } + + renv_bootstrap_project_type <- function(path) { + + descpath <- file.path(path, "DESCRIPTION") + if (!file.exists(descpath)) + return("unknown") + + desc <- tryCatch( + read.dcf(descpath, all = TRUE), + error = identity + ) + + if (inherits(desc, "error")) + return("unknown") + + type <- desc$Type + if (!is.null(type)) + return(tolower(type)) + + package <- desc$Package + if (!is.null(package)) + return("package") + + "unknown" + + } + + renv_bootstrap_user_dir <- function() { + dir <- renv_bootstrap_user_dir_impl() + path.expand(chartr("\\", "/", dir)) + } + + renv_bootstrap_user_dir_impl <- function() { + + # use local override if set + override <- getOption("renv.userdir.override") + if (!is.null(override)) + return(override) + + # use R_user_dir if available + tools <- asNamespace("tools") + if (is.function(tools$R_user_dir)) + return(tools$R_user_dir("renv", "cache")) + + # try using our own backfill for older versions of R + envvars <- c("R_USER_CACHE_DIR", "XDG_CACHE_HOME") + for (envvar in envvars) { + root <- Sys.getenv(envvar, unset = NA) + if (!is.na(root)) + return(file.path(root, "R/renv")) + } + + # use platform-specific default fallbacks + if (Sys.info()[["sysname"]] == "Windows") + file.path(Sys.getenv("LOCALAPPDATA"), "R/cache/R/renv") + else if (Sys.info()[["sysname"]] == "Darwin") + "~/Library/Caches/org.R-project.R/R/renv" + else + "~/.cache/R/renv" + + } + + renv_bootstrap_version_friendly <- function(version, shafmt = NULL, sha = NULL) { + sha <- sha %||% attr(version, "sha", exact = TRUE) + parts <- c(version, sprintf(shafmt %||% " [sha: %s]", substring(sha, 1L, 7L))) + paste(parts, collapse = "") + } + + renv_bootstrap_exec <- function(project, libpath, version) { + if (!renv_bootstrap_load(project, libpath, version)) + renv_bootstrap_run(project, libpath, version) + } + + renv_bootstrap_run <- function(project, libpath, version) { + + # perform bootstrap + bootstrap(version, libpath) + + # exit early if we're just testing bootstrap + if (!is.na(Sys.getenv("RENV_BOOTSTRAP_INSTALL_ONLY", unset = NA))) + return(TRUE) + + # try again to load + if (requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) { + return(renv::load(project = project)) + } + + # failed to download or load renv; warn the user + msg <- c( + "Failed to find an renv installation: the project will not be loaded.", + "Use `renv::activate()` to re-initialize the project." + ) + + warning(paste(msg, collapse = "\n"), call. = FALSE) + + } + + renv_json_read <- function(file = NULL, text = NULL) { + + jlerr <- NULL + + # if jsonlite is loaded, use that instead + if ("jsonlite" %in% loadedNamespaces()) { + + json <- tryCatch(renv_json_read_jsonlite(file, text), error = identity) + if (!inherits(json, "error")) + return(json) + + jlerr <- json + + } + + # otherwise, fall back to the default JSON reader + json <- tryCatch(renv_json_read_default(file, text), error = identity) + if (!inherits(json, "error")) + return(json) + + # report an error + if (!is.null(jlerr)) + stop(jlerr) + else + stop(json) + + } + + renv_json_read_jsonlite <- function(file = NULL, text = NULL) { + text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n") + jsonlite::fromJSON(txt = text, simplifyVector = FALSE) + } + + renv_json_read_patterns <- function() { + + list( + + # objects + list("{", "\t\n\tobject(\t\n\t", TRUE), + list("}", "\t\n\t)\t\n\t", TRUE), + + # arrays + list("[", "\t\n\tarray(\t\n\t", TRUE), + list("]", "\n\t\n)\n\t\n", TRUE), + + # maps + list(":", "\t\n\t=\t\n\t", TRUE), + + # newlines + list("\\u000a", "\n", FALSE) + + ) + + } + + renv_json_read_envir <- function() { + + envir <- new.env(parent = emptyenv()) + + envir[["+"]] <- `+` + envir[["-"]] <- `-` + + envir[["object"]] <- function(...) { + result <- list(...) + names(result) <- as.character(names(result)) + result + } + + envir[["array"]] <- list + + envir[["true"]] <- TRUE + envir[["false"]] <- FALSE + envir[["null"]] <- NULL + + envir + + } + + renv_json_read_remap <- function(object, patterns) { + + # repair names if necessary + if (!is.null(names(object))) { + + nms <- names(object) + for (pattern in patterns) + nms <- gsub(pattern[[2L]], pattern[[1L]], nms, fixed = TRUE) + names(object) <- nms + + } + + # repair strings if necessary + if (is.character(object)) { + for (pattern in patterns) + object <- gsub(pattern[[2L]], pattern[[1L]], object, fixed = TRUE) + } + + # recurse for other objects + if (is.recursive(object)) + for (i in seq_along(object)) + object[i] <- list(renv_json_read_remap(object[[i]], patterns)) + + # return remapped object + object + + } + + renv_json_read_default <- function(file = NULL, text = NULL) { + + # read json text + text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n") + + # convert into something the R parser will understand + patterns <- renv_json_read_patterns() + transformed <- text + for (pattern in patterns) + transformed <- gsub(pattern[[1L]], pattern[[2L]], transformed, fixed = TRUE) + + # parse it + rfile <- tempfile("renv-json-", fileext = ".R") + on.exit(unlink(rfile), add = TRUE) + writeLines(transformed, con = rfile) + json <- parse(rfile, keep.source = FALSE, srcfile = NULL)[[1L]] + + # evaluate in safe environment + result <- eval(json, envir = renv_json_read_envir()) + + # fix up strings if necessary -- do so only with reversible patterns + patterns <- Filter(function(pattern) pattern[[3L]], patterns) + renv_json_read_remap(result, patterns) + + } + + + # load the renv profile, if any + renv_bootstrap_profile_load(project) + + # construct path to library root + root <- renv_bootstrap_library_root(project) + + # construct library prefix for platform + prefix <- renv_bootstrap_platform_prefix() + + # construct full libpath + libpath <- file.path(root, prefix) + + # run bootstrap code + renv_bootstrap_exec(project, libpath, version) + + invisible() + +}) diff --git a/tests/testthat.R b/tests/testthat.R new file mode 100644 index 0000000..0fb3335 --- /dev/null +++ b/tests/testthat.R @@ -0,0 +1,12 @@ +# This file is part of the standard setup for testthat. +# It is recommended that you do not modify it. +# +# Where should you do additional test configuration? +# Learn more about the roles of various files in: +# * https://r-pkgs.org/testing-design.html#sec-tests-files-overview +# * https://testthat.r-lib.org/articles/special-files.html + +library(testthat) +library(climateapi) + +test_check("climateapi") diff --git a/tests/testthat/test-get_business_patterns.R b/tests/testthat/test-get_business_patterns.R new file mode 100644 index 0000000..544d90c --- /dev/null +++ b/tests/testthat/test-get_business_patterns.R @@ -0,0 +1,30 @@ +testthat::test_that("naics_code_digits errors clearly when not in c(2,3)", { + testthat::expect_error({get_business_patterns(year = 2022, naics_code_digits = 4)}) +}) + + +testthat::test_that("year errors clearly when year is outside accceptable range", { + testthat::expect_error({get_business_patterns(year = 2025, naics_code_digits = 3)}) + testthat::expect_error({get_business_patterns(year = 1970, naics_code_digits = 3)}) +}) + +testthat::test_that("geo errors clearly when geo is not 'county' or 'zipcode'; does not error when in 'county' or 'zipcode' ", { + testthat::expect_error({get_business_patterns(geo = "tract", naics_code_digits = 3)}) + testthat::expect_no_error({get_business_patterns(geo = "county", naics_code_digits = 2)}) +}) + +testthat::test_that("employees has no negative values", { + test <- get_business_patterns(geo = "zipcode", naics_code_digits = 2) + + # Ensure the column exists + testthat::expect_true( + "employees" %in% names(test), + info = "`employees` column is missing in the returned data." + ) + + # Assert no negative values (ignore NAs) + testthat::expect_true( + all(test$employees[!is.na(test$employees)] >= 0), + info = "Found negative values in `employees`." + ) +}) diff --git a/tests/testthat/test-get_lodes.R b/tests/testthat/test-get_lodes.R new file mode 100644 index 0000000..60cf041 --- /dev/null +++ b/tests/testthat/test-get_lodes.R @@ -0,0 +1,56 @@ +testthat::test_that("states clearly errors when invalid state abbreviation is supplied", { + + testthat::expect_error({get_lodes(lodes_type = "wac", year = 2022, states = "AB")}) + + testthat::expect_error({get_lodes(lodes_type = "rac", year = 2022, states = "AB")}) + + testthat::expect_error({get_lodes(lodes_type = "od", year = 2022, states = c("AL", "AM"))}) + + +}) + + +testthat::test_that("warning generated when missing state and year combination is supplied", { + + testthat::expect_warning({get_lodes(lodes_type = "od", year = 2022, states = c("AK", "MN"))}) + + testthat::expect_warning({get_lodes(lodes_type = "wac", year = 2009, states = c("DC", "MN"))}) + + +}) + + +testthat::test_that("error generated when invalid lodes_type is supplied", { + + testthat::expect_error({get_lodes(lodes_type = "dc", year = 2022, states = c("AK", "MN"))}) + + testthat::expect_error({get_lodes(lodes_type = "mac", year = 2009, states = c("DC", "MN"))}) + + +}) + + + +testthat::test_that("variables have no negative values", { + test <- get_lodes(lodes_type = "wac", year = 2022, states = "all") + + # Select numeric columns + num_df <- dplyr::select(test, where(is.numeric)) + + # Identify if any numeric columns have any negative values (ignoring NAs) + neg_cols <- num_df %>% + dplyr::summarise(dplyr::across(dplyr::everything(), ~ any(.x < 0, na.rm = TRUE))) %>% + tidyr::pivot_longer(everything(), names_to = "col", values_to = "has_neg") %>% + dplyr::filter(has_neg) %>% + dplyr::pull(col) + + # Expect no negatives anywhere; if present, list the columns + testthat::expect_true( + length(neg_cols) == 0, + info = if (length(neg_cols) > 0) + sprintf("Negative values found in: %s", paste(bad_cols, collapse = ", ")) + else + NULL + ) +}) +