GPS-Project-Website/training_drag_and_drop.html at master · StephanieWLo/GPS-Project-Website · GitHub

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<!DOCTYPE html>
<html lang="en">

<head>
  <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
  <meta charset="utf-8">

  <title>GPS :: Global Pneumococcal Sequencing Project</title>
  <meta name="description" content="">
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<body>

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        <div class="logo">
          <h1><i class=""></i><a href="index.html"><span class="color">GPS</span></a></h1>
          <div class="hmeta">Global Pneumococcal Sequencing Project</div>
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            <a class="dropdown-toggle" data-toggle="dropdown" href="#">Training <b class="caret"></b></a>
            <ul class="dropdown-menu">
              <li class=""><a id="training_browser_based" href="training_drag_and_drop.html">Drag and Drop Tools</a>
              </li>
              <li class=""><a id="training_command_line" href="training_command_line.html">Command Line</a></li>
            </ul>
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  <div id="content">

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    <section>
      <div class="container content justify">
        <header>
          <h1><i class="fa fa-pencil-square-o blue"></i> Training: Drag and Drop Tools</h1>
        </header>
        <div class="desc">
          <!-- TODO: add training drag and drop -->
          <p>To achieve an ongoing genomic surveillance in LMICs, we encourage GPS partners to generate and analyse data
            locally. For the latter, GPS2, together with our sister project <a target="_blank"
              href="https://www.gbsgen.net/">JUNO</a>, develop a series of online bioinformatics training modules and
            they are freely available at our <a target="_blank" href="https://training.bactgen.sanger.ac.uk/">training
              site</a>.</p>

          <p>Below are tutorial videos to illustrate how to use web-based tools to perform bioinformatic analysis and to
            visualise analysed data.</p>

          <br>
          <a target="_blank" href="https://pathogen.watch/genomes/all?genusId=1301&speciesId=1313"><img
              src="img/pathogenwatch-logo.png" style="width:200px;" /></a>
          <p>
            <!-- <h2 class="oblue">Pathogenwatch</h2> -->
            <em>In silico serotype, GPSC, MLST and antibiotic resistance</em>
          <div class="video-container">
            <iframe width="560" height="315" src="https://www.youtube.com/embed/Q8bDuZZ3hXg" frameborder="0"
              allow="accelerometer; autoplay; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
          </div>
          <a class="btn btn-info white" href="example-assemblies.zip" download><i
              class="fa fa-download white fa-lg"></i> Example assemblies</a>
          </p>

          <br>
          <a target="_blank" href="https://microreact.org/showcase"><img src="img/microreact-logo.png"
              style="width:200px;" /></a>
          <p>
            <!-- <h2 class="oblue">Microreact</h2> -->

            <em>Visualisation of phylogeny with temporal and spatial metadata</em>
            <br>
          <p><a href="https://vimeo.com/393391441">Microeact Introduction</a> from <a
              href="https://vimeo.com/cgps">Genomic Pathogen Surveillance</a> on <a href="https://vimeo.com">Vimeo</a>.
          </p>
          <br>
          <div class="video-container">
            <iframe src="https://player.vimeo.com/video/393391441" width="560" height="315" frameborder="0"
              allow="autoplay; fullscreen" allowfullscreen></iframe>
          </div>

          <a class="btn btn-info white" href="microreact-examples.zip" download><i
              class="fa fa-download white fa-lg"></i> Example data</a>
          </p>

          <br>
          <a target="_blank" href="https://jameshadfield.github.io/phandango/#/gps"><img src="img/phandango-logo.png"
              style="width:200px;" /></a>
          <p>
            <!-- <h2 class="oblue">Phandango</h2> -->
            <em>Visualisation of recombination and pangenome analysis</em>
          <div class="video-container">
            <iframe width="560" height="315" src="https://www.youtube.com/embed/pGgtt2z8sUI" frameborder="0"
              allow="accelerometer; autoplay; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
          </div>
          <a class="btn btn-info white" href="recombination-examples.zip" download><i
              class="fa fa-download white fa-lg"></i> Example recombination data</a>
          <a class="btn btn-info white" href="pangenome-examples.zip" download><i
              class="fa fa-download white fa-lg"></i> Example pan genome data</a>
          </p>
        </div>
      </div>
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