GPS-Project-Website/serotypes.html at master · StephanieWLo/GPS-Project-Website · GitHub

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<!DOCTYPE html>
<html lang="en">

<head>
  <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
  <meta charset="utf-8">

  <title>GPS :: Global Pneumococcal Sequencing Project</title>
  <meta name="description" content="">
  <meta name="viewport" content="width=device-width, initial-scale=1">
  <link rel="stylesheet" href="https://netdna.bootstrapcdn.com/bootstrap/3.1.0/css/bootstrap.min.css">
  <link href='https://fonts.googleapis.com/css?family=Open+Sans:400italic,600italic,400,300,600' rel='stylesheet'
    type='text/css'>
  <!-- fonts, icons for bootstrap -->
  <link href="https://netdna.bootstrapcdn.com/font-awesome/4.0.3/css/font-awesome.css" rel="stylesheet">
  <link href="css/styles.min.css" rel="stylesheet">

  <!-- HTML5 Support for IE -->
  <!--[if lt IE 9]>
      <script src="https://cdnjs.cloudflare.com/ajax/libs/html5shiv/3.7.2/html5shiv.min.js"></script>
    <![endif]-->

  <!-- Favicon -->
  <link rel="shortcut icon" href="gps.ico">
</head>

<body>

  <!-- Header Starts -->
  <header>
    <div class="container">
      <div class="row">
        <div class="logo">
          <h1><i class=""></i><a href="index.html"><span class="color">GPS</span></a></h1>
          <div class="hmeta">Global Pneumococcal Sequencing Project</div>
        </div>
      </div>
    </div>
  </header>

  <!-- Navigation bar starts -->

  <div class="navbar navbar-default bs-docs-nav top-menu" role="banner">
    <div class="container">
      <div class="navbar-header">
        <button class="navbar-toggle" type="button" data-toggle="collapse" data-target=".bs-navbar-collapse">
          <span class="sr-only">Toggle navigation</span>
          <span class="icon-bar"></span>
          <span class="icon-bar"></span>
          <span class="icon-bar"></span>
        </button>
      </div>

      <nav class="collapse navbar-collapse bs-navbar-collapse" role="navigation">
        <ul class="nav navbar-nav">
          <li class="active">
            <a id="home" href="index.html">
              <!-- <i class="fa fa-home blue"> </i> --> Home
            </a>
          </li>
          <li class="dropdown">
            <a class="dropdown-toggle" data-toggle="dropdown" href="#">
              About <b class="caret"></b>
            </a>
            <ul class="dropdown-menu">
              <li class=""><a id="summary" href="project_outline.html">Project Outline</a></li>
              <li class=""><a id="summary" href="the_team.html">The Team</a></li>
              <li class=""><a id="founders" href="partners.html">Project Partners </a></li>
              <li class=""><a id="substudies" href="substudies.html">Sub-studies</a></li>
            </ul>
          </li>
          <li class="dropdown">
            <a class="dropdown-toggle" data-toggle="dropdown" href="#">Resources <b class="caret"></b></a>
            <ul class="dropdown-menu">
              <li class=""><a id="resources_overview" href="resources_overview.html">Overview</a></li>
              <li class=""><a id="sampling_map" href="sampling_map.html">Countries</a></li>
              <li class=""><a id="GPSC_lineages" href="GPSC_lineages.html">Strains</a></li>
              <li class=""><a id="serotypes" href="serotypes.html">Serotypes</a></li>
              <!-- <li class=""><a id="public_database" href="/public_database.html">Database (public)</a></li> -->
              <li class=""><a id="data_downloads" target="_blank" href="/dataviewer/gps/data">Database</a></li>
            </ul>
          </li>
          <li><a id="publications" href="publications.html">Publications</a></li>
          <li class="dropdown">
            <a class="dropdown-toggle" data-toggle="dropdown" href="#">Training <b class="caret"></b></a>
            <ul class="dropdown-menu">
              <li class=""><a id="training_browser_based" href="training_drag_and_drop.html">Drag and Drop Tools</a>
              </li>
              <li class=""><a id="training_command_line" href="training_command_line.html">Command Line</a></li>
            </ul>
          </li>
          <li><a id="contact" href="contact.html">Contact</a></li>
        </ul>
      </nav>
    </div>
  </div>
  <!-- Navigation bar ends -->

  <div id="content">
    <section>
      <div class="container content">
        <header>
          <h1><i class="fa fa-pencil oblue"></i> Serotypes</h1>
        </header>

        <table id="serotypes-table" class="citation_table table table-striped">


        </table>
      </div>
    </section>
  </div>
  <div id="modal"></div>
  <footer>
    <div class="container">
      <div class="row copy">
        <div class="col-lg-7 col-md-7 col-sm-12 copy-left">
          <span>GPS &copy; 2016</span> -
          <a href="cookiespolicy.html" onclick="">Cookies policy</a> | <a href="legal.html">Terms &amp; Conditions.</a>
        </div>
        <div class="col-lg-5 col-md-5 col-sm-12 copy-right">
          This site is hosted by the <a href="https://www.sanger.ac.uk/">Wellcome Trust Sanger Institute</a>
        </div>
      </div>
    </div>

    <div class="clearfix"></div>
  </footer>
  <script type="text/javascript" src="https://code.jquery.com/jquery-latest.min.js"></script>
  <script src="https://netdna.bootstrapcdn.com/bootstrap/3.1.0/js/bootstrap.min.js"></script>
  <script src="js/custom.min.js"></script>
  <script src="https://d3js.org/d3.v4.min.js"></script>
  <script>
    var tabulate = function (data, columns) {
      var table = d3.select('table#serotypes-table');
      var thead = table.append('thead');
      var tbody = table.append('tbody');

      thead.append('tr')
        .selectAll('th')
        .data(columns, function (d) { return d.name })
        .enter()
        .append('th')
        .text(function (d) { return d.name });

      var rows = tbody.selectAll('tr')
        .data(data)
        .enter()
        .append('tr')

      var cells = rows.selectAll('td')
        .data(function (row) {
          return columns.map(function (column) {
            return column.accessor(row)
          })
        })
        .enter()
        .append('td')
        .html(function (d) { return d })

      return table;
    }
    var columns = [
      { name: 'Count', accessor: function (d) { return d.count } },
      { name: 'Serotype', accessor: function (d) { return d.serotype } },
      { name: 'Accession Number', accessor: function (d) { return d.accessionNumber } },
      { name: 'Comments', accessor: function (d) { return d.comments } },
      { name: 'Reference', accessor: function (d) { return '<a target="_blank" href="https://' + d.link + '">' + d.reference + '</a>' } },
    ]

    window.onload = function () {
      d3.tsv('serotypes.tsv', function (data) {
        console.log(data)
        tabulate(data, columns)
      })
    }
  </script>
  <script type="text/javascript" src="/zxtm/piwik2.js"></script>
</body>

</html>