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<!DOCTYPE html>
<html lang="en">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<meta charset="utf-8">
<title>GPS :: Global Pneumococcal Sequencing Project</title>
<meta name="description" content="">
<meta name="viewport" content="width=device-width, initial-scale=1">
<link rel="stylesheet" href="https://netdna.bootstrapcdn.com/bootstrap/3.1.0/css/bootstrap.min.css">
<link href='https://fonts.googleapis.com/css?family=Open+Sans:400italic,600italic,400,300,600' rel='stylesheet' type='text/css'>
<!-- fonts, icons for bootstrap -->
<link href="https://netdna.bootstrapcdn.com/font-awesome/4.0.3/css/font-awesome.css" rel="stylesheet">
<link href="css/styles.min.css" rel="stylesheet">
<!-- HTML5 Support for IE -->
<!--[if lt IE 9]>
<script src="https://cdnjs.cloudflare.com/ajax/libs/html5shiv/3.7.2/html5shiv.min.js"></script>
<![endif]-->
<!-- Favicon -->
<link rel="shortcut icon" href="gps.ico">
</head>
<body>
<!-- Header Starts -->
<header>
<div class="container">
<div class="row">
<div class="logo">
<h1><i class=""></i><a href="index.html"><span class="color">GPS</span></a></h1>
<div class="hmeta">Global Pneumococcal Sequencing Project</div>
</div>
</div>
</div>
</header>
<!-- Navigation bar starts -->
<div class="navbar navbar-default bs-docs-nav top-menu" role="banner">
<div class="container">
<div class="navbar-header">
<button class="navbar-toggle" type="button" data-toggle="collapse" data-target=".bs-navbar-collapse">
<span class="sr-only">Toggle navigation</span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
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</button>
</div>
<nav class="collapse navbar-collapse bs-navbar-collapse" role="navigation">
<ul class="nav navbar-nav">
<li class="active">
<a id="home" href="index.html">
<!-- <i class="fa fa-home blue"> </i> --> Home
</a>
</li>
<li class="dropdown">
<a class="dropdown-toggle" data-toggle="dropdown" href="#">
About <b class="caret"></b>
</a>
<ul class="dropdown-menu">
<li class=""><a id="summary" href="project_outline.html">Project Outline</a></li>
<li class=""><a id="summary" href="the_team.html">The Team</a></li>
<li class=""><a id="founders" href="partners.html">Project Partners </a></li>
<li class=""><a id="substudies" href="substudies.html">Sub-studies</a></li>
</ul>
</li>
<li class="dropdown">
<a class="dropdown-toggle" data-toggle="dropdown" href="#">Resources <b class="caret"></b></a>
<ul class="dropdown-menu">
<li class=""><a id="resources_overview" href="resources_overview.html">Overview</a></li>
<li class=""><a id="sampling_map" href="sampling_map.html">Countries</a></li>
<li class=""><a id="GPSC_lineages" href="GPSC_lineages.html">Strains</a></li>
<li class=""><a id="serotypes" href="serotypes.html">Serotypes</a></li>
<!-- <li class=""><a id="public_database" href="/public_database.html">Database (public)</a></li> -->
<li class=""><a id="data_downloads" target="_blank" href="/dataviewer/gps/data">Database</a></li>
</ul>
</li>
<li><a id="publications" href="publications.html">Publications</a></li>
<li class="dropdown">
<a class="dropdown-toggle" data-toggle="dropdown" href="#">Training <b class="caret"></b></a>
<ul class="dropdown-menu">
<li class=""><a id="training_browser_based" href="training_drag_and_drop.html">Drag and Drop Tools</a></li>
<li class=""><a id="training_command_line" href="training_command_line.html">Command Line</a></li>
</ul>
</li>
<li><a id="contact" href="contact.html">Contact</a></li>
</ul>
</nav>
</div>
</div>
<!-- Navigation bar ends -->
<div id="content">
<section id="publications">
<div class="container content justify">
<header>
<h1><i class="fa fa-pencil oblue"></i> Publications </h1>
</header>
<div class="desc italics">
<ul>
<li>
<p>
<span class="grey">
JCM 2018 Global distribution of invasive serotype 35D Streptococcus pneumoniae post-PCV13 introduction
</span><br>
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<a class="btn btn-info white" target="_blank" href="Journals/2018-Lo-JCM-35D.pdf">
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Journal
</a>
</p>
</li>
<hr>
<li>
<p>
<span class="grey">
BioRxiv 2018 Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci
</span><br>
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<i class="fa fa-users oblue fa-lg"></i>
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<a class="btn btn-info white" target="_blank" href="Journals/2018-Taj-BioRvix-serotype3_ST180.pdf">
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Journal
</a>
</p>
</li>
<hr>
<li>
<p>
<span class="grey">
ISPPD 2018 Diversity of pneumococcal carriage in the Upper River Region of The Gambia in 2009 prior to the introduction of pneumococcal conjugate vaccines
</span><br>
<a class="btn btn-default" title="Authors & Affiliations" href="" disabled>
<i class="fa fa-users oblue fa-lg"></i>
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</a>
<a class="btn btn-success white" target="_blank" href="posters/ISPPD2018_48_Arafat_Mohamed_Cham.pdf">
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</li>
<hr>
<li>
<p>
<span class="grey">
ISPPD 2018 Molecular characterization of Streptococcus pneumoniae strains isolated from invasive disease in the pre- and post-PCV10 periods in Brazil, 2005-2015
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<i class="fa fa-users oblue fa-lg"></i>
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</a>
<a class="btn btn-success white" target="_blank" href="posters/ISPPD2018_126_Samanta_Grassi_Almeida.pdf">
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</li>
<hr>
<li>
<p>
<span class="grey">
ISPPD 2018 Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci
</span><br>
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<i class="fa fa-users oblue fa-lg"></i>
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<a class="btn btn-success white" target="_blank" href="posters/ISPPD2018_127_Taj_Azarian.pdf">
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</p>
</li>
<hr>
<li>
<p>
<span class="grey">
ISPPD 2018 Longitudinal surveillance reveals high clonality of pneumococcal carriage in the first year of life in The Gambia
</span><br>
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<i class="fa fa-users oblue fa-lg"></i>
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</a>
<a class="btn btn-success white" target="_blank" href="posters/ISPPD2018_128_Madikay_Senghore_cariage.pdf">
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</li>
<hr>
<li>
<p>
<span class="grey">
ISPPD 2018 Genetic diversity and distribution of pneumococcal surface lipoproteins and implications on potential protein-based vaccines
</span><br>
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<i class="fa fa-users oblue fa-lg"></i>
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<a class="btn btn-success white" target="_blank" href="posters/ISPPD2018_129_Ebrima_Bojang.pdf">
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</li>
<hr>
<li>
<p>
<span class="grey">
ISPPD 2018 Population genomics reveals vaccination-induced genotypic changes in carried pneumococcal population
</span><br>
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<a class="btn btn-success white" target="_blank" href="posters/ISPPD2018_132_Chrispin_Chaguza.pdf">
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</li>
<hr>
<li>
<p>
<span class="grey">
ISPPD 2018 Genetic diversity, serotype prediction and resistotyping of nasopharyngeal isolates of S. pneumoniae from Indian Hajj pilgrims by whole genome sequencing
</span><br>
<a class="btn btn-default" title="Authors & Affiliations" href="" disabled>
<i class="fa fa-users oblue fa-lg"></i>
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</a>
<a class="btn btn-success white" target="_blank" href="posters/ISPPD2018_136_Feroze_Ganaie.pdf">
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<hr>
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<span class="grey">
ISPPD 2018 Defining the lineages of the pneumococcus to understand disease and vaccine impact: a multi-continent genome analysis
</span><br>
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<i class="fa fa-users oblue fa-lg"></i>
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</a>
<a class="btn btn-success white" target="_blank" href="posters/ISPPD2018_137_Rebecca_Gladstone.pdf">
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</p>
</li>
<hr>
<li>
<p>
<span class="grey">
ISPPD 2018 Hotspots of recombination in pneumococci isolated from nepalese children prior to PCV introduction
</span><br>
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</a>
<a class="btn btn-success white" target="_blank" href="posters/ISPPD2018_140_Rama_Kandasamy_recombination.pdf">
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<hr>
<li>
<p>
<span class="grey">
ISPPD 2018 Insights into potential PCV effects on pneumococcal lineages using whole genome sequencing
</span><br>
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<a class="btn btn-success white" target="_blank" href="posters/ISPPD2018_141_Rama_Kandasamy_PCV_effect.pdf">
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</p>
</li>
<hr>
<li>
<p>
<span class="grey">
ISPPD 2018 Comparative genomic analysis of samples collected pre- and post-introduction of pneumococcal conjugate vaccine (PCV7) in Hong Kong
</span><br>
<a class="btn btn-default" title="Authors & Affiliations" href="" disabled>
<i class="fa fa-users oblue fa-lg"></i>
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<a class="btn btn-success white" target="_blank" href="posters/ISPPD2018_143_Pierra_Law.pdf">
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</p>
</li>
<hr>
<li>
<p>
<span class="grey">
ISPPD 2018 A multidrug resistant pneumococcal CC230 sub-lineage harbouring a mosaic tet(S/M) gene encoding tetracycline resistance in South Africa
</span><br>
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<i class="fa fa-users oblue fa-lg"></i>
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<a class="btn btn-success white" target="_blank" href="posters/ISPPD2018_146_Stephanie_Lo_tetSM.pdf">
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<hr>
<li>
<p>
<span class="grey">
ISPPD 2018 Whole genome sequencing of Streptococcus pneumoniae serogroup 19 isolates before the introduction of vaccine in the National Immunization Programme of India (NIP)
</span><br>
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<i class="fa fa-users oblue fa-lg"></i>
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<a class="btn btn-success white" target="_blank" href="posters/ISPPD2018_149_Geetha_Nagaraj_serogroup19.pdf">
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<span class="grey">
ISPPD 2018 Indian population genomics datasets describing the pre-vaccine evolutionary epidemiology of Streptococcus pneumoniae using a whole genome sequencing approach
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<a class="btn btn-success white" target="_blank" href="posters/ISPPD2018_150_Geetha_Nagaraj_pre-vaccine.pdf">
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<span class="grey">
ISPPD 2018 Nasopharyngeal carriage of Streptococcus pneumoniae serotype 6A/6B in Gambian infants is highly dynamic within the first year of life: a longitudinal study
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<a class="btn btn-success white" target="_blank" href="posters/ISPPD2018_154_Sambou_Suso.pdf">
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<span class="grey">
ISPPD 2018 Serotype diversity and putative novel cps loci in a large, global collection of pneumococci
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<a class="btn btn-success white" target="_blank" href="posters/ISPPD2018_157_Andries_van_Tonder.pdf">
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ISPPD 2018 Hospital based surveillance of vaccine preventable pneumococcal meningitis among children <=59 months in west and central Africa, 2010 to 2016
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ISPPD 2018 Continued surveillance of invasive pneumococcal disease in African countries is needed to guide optimal vaccine design
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IMMEM XI Detection of Streptococcus pneumoniae non vaccine
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