BED files

[robjweeks]

I am trying to use eDMR on my RRBS libraries/sequences which have been analysed with methylKit. I am unable to import the hg38 bed file (downloaded from UCSC) with genebody.anno. It appears that my BED file is not the same as your "chr22.hg19_refseq_all_types.bed" and that this difference explains my problem with the import. Has the bed file format changed?

I have tried to edit my BED file but without success. How can I generate a bed file for the whole genome (hg38) which I can import into eDMR?

Thanks for all of your help.

Cheers

Rob