some Python script files in ScaleCRISPR/bin/ don't have execute permissions

[andreiprodan]

ScaleCRISPR (repo cloned from GitHub) will crash at process qcGuideinput with error code 126 because the 'qcGuideInput.py' script does not have execute permissions

Pipeline was run on a HPC using singularity and the Slurm executor.

'countGuide.py' and 'qcGuideInput.py' scripts also lack execute permissions

Fixing these file permissions (e.g. chmod -R 770 ScaleCRISPR/bin/) allows the pipeline to complete successfully

[patelgrp]

Ha, I was about to post the exact same issue! I'm posting here to see if it draws attention from the developer. I can confirm that fixing the permissions allows the pipeline to complete successfully.