Execution halted #2
Description
Dear Sanrrone,
I attempted to use GGisy, but I am getting the error (see below). From some reason, only one blast hit was generated (see output table attached).
I wonder if you could help me here.
Thank you in advance.
Sincerely
Nemanja
ubuntu@dynamiceinstein-674ae:/mnt/volume/GGisy$ sudo python3.8 GGisy.py -r example/genome1.fna -q example/genome2.fna
Building a new DB, current time: 09/28/2022 11:56:49
New DB name: /mnt/volume/GGisy/ref
New DB title: example/genome1.fna
Sequence type: Nucleotide
Keep MBits: T
Maximum file size: 10000000
[synteny.txt](https://github.com/Sanrrone/GGisy/files/9664650/synteny.txt)
00B
Adding sequences from FASTA; added 18 sequences in 0.0142639 seconds.
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
anyDuplicated, append, as.data.frame, basename, cbind, colnames,
dirname, do.call, duplicated, eval, evalq, Filter, Find, get, grep,
grepl, intersect, is.unsorted, lapply, Map, mapply, match, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank,
rbind, Reduce, rownames, sapply, setdiff, sort, table, tapply,
union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Attaching package: ‘S4Vectors’
The following objects are masked from ‘package:base’:
expand.grid, I, unname
Loading required package: IRanges
Loading required package: GenomeInfoDb
Attaching package: ‘varhandle’
The following object is masked from ‘package:S4Vectors’:
unfactor
Error in if (dat.col[i, 1] == chr1.s) { :
missing value where TRUE/FALSE needed
Calls: circos
Execution halted