Can't exec "cd": No such file or directory at ./PAst.pl line 43. #1
Description
Hi, i am trying to run PAst for pseudomonas serotyping and i encountered following error-
***./PAst.pl /home/bvs/neelam/ncbi-blast/bin /home/bvs/neelam/out /home/bvs/neelam/genome/fna /home/bvs/neelam/serotyping/OSAdb.fasta*
**
There are 371 files in the input directory, these are now processed by PAST.
Can't exec "cd": No such file or directory at ./PAst.pl line 43.
Warning: [blastn] Query is Empty!
- PAst encountered problems with BLAST analysis of ., please check manually.
Can't exec "cd": No such file or directory at ./PAst.pl line 43.
Warning: [blastn] Query is Empty! - PAst encountered problems with BLAST analysis of .., please check manually.
Can't exec "cd": No such file or directory at ./PAst.pl line 43.
BLAST query error: CFastaReader: Near line 2, there's a line that doesn't look like plausible data, but it's not marked as defline or comment. - PAst encountered problems with BLAST analysis of 7790clustout, please check manually.
Can't exec "cd": No such file or directory at ./PAst.pl line 43. - PAst encountered problems with BLAST analysis of P_aeruginosa_1.fna, please check manually.
Can't exec "cd": No such file or directory at ./PAst.pl line 43.
Warning: [blastn] Query is Empty! - PAst encountered problems with BLAST analysis of P_aeruginosa_1.fna.faa, please check manually.
Can't exec "cd": No such file or directory at ./PAst.pl line 43. - PAst encountered problems with BLAST analysis of P_aeruginosa_12-4-4_59.fna, please check manually.
Can't exec "cd": No such file or directory at ./PAst.pl line 43. - PAst encountered problems with BLAST analysis of P_aeruginosa_12939.fna, please check manually.
Can't exec "cd": No such file or directory at ./PAst.pl line 43. - PAst encountered problems with BLAST analysis of P_aeruginosa_1334_14.fna, please check manually.
Can't exec "cd": No such file or directory at ./PAst.pl line 43. - PAst encountered problems with BLAST analysis of P_aeruginosa_152962.fna, please check manually.
Can't exec "cd": No such file or directory at ./PAst.pl line 43.
Thank you!