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Description
When running
amdirt download -t ancientmetagenome-hostassociated -y libraries --output data/amdirt/with amdirt, version 1.6.5
While I get the message amdirt [INFO]: Downloading ancientmetagenome-hostassociated libraries table from v25.03.0 release, saving to data/amdirt//ancientmetagenome-hostassociated_libraries_v25.03.0.tsv
The data is not actually saved there, but just in . (i.e., where I ran the command in).
I have a feeling that this is because possibly . is hardcoded in the function on this line:
amdirt/amdirt/download/__init__.py
Line 10 in f53816e
| def download(table: str, table_type: str, release: str, output: str = ".") -> str: |
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