Skip to content

Error in DeviCNV_Example.runningScript.sh #2

@smerella

Description

@smerella

Dear developers,
I am trying your DeviCNV software. I followed the instruction and I installed all the required R and python dependencies.
Running DeviCNV_Example.runningScript.sh I had the error:

File "./Code_v1.5.1//python.scoreCNV.py", line 263
  FalseIDList.append(ID2)
                        ^
TabError: inconsistent use of tabs and spaces in indentation 

So I opened the python.scoreCNV.py and I changed the tabs in spaces. Then I had a new error

File "./Code_v1.5.1//python.scoreCNV.py", line 300, in <module>
    [scoreStats,outHList,outVList]=readCNVFile(inCNVFileName, delfilterDic, dupfilterDic,scoreStat)
  File "./Code_v1.5.1//python.scoreCNV.py", line 180, in readCNVFile
    for headPos in xrange(len(headList)):
NameError: name 'xrange' is not defined  

And in this case I solved the problem adding this import:
from past.builtins import xrange
And now it works :)
I hope this will be helpfull for other users :)

Thanks!!

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions