The file US_NHD_Flowline_HUCxx-2ttl.py still connects flowlines using hyf:downstreamWaterBody. This should be updated to hyf:downstreamFlowPath.
Updating this in the Hydrology repo will take some time as importing flowlines can be a lengthy process. It effects HUC01, HUC05, and HUC07. Future HUCxx will use the correction.