faim-python-client/.github/workflows/test.yml at main · S-FM/faim-python-client · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
name: Test

on:
  push:
    branches: [main]
  pull_request:
    branches: [main]

jobs:
  test:
    name: Test Python ${{ matrix.python-version }}
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.11", "3.12"]

    steps:
      - name: Checkout code
        uses: actions/checkout@v4

      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}

      - name: Install uv
        uses: astral-sh/setup-uv@v3
        with:
          version: "latest"

      - name: Install dependencies
        run: |
          uv pip install --system -e .
          uv pip install --system pytest pytest-cov pytest-asyncio

      - name: Run unit tests
        run: |
          pytest tests/unit/ -v --cov=faim_sdk --cov=faim_client --cov-report=xml --cov-report=term

      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v4
        if: matrix.python-version == '3.11'
        with:
          file: ./coverage.xml
          fail_ci_if_error: false
          token: ${{ secrets.CODECOV_TOKEN }}

  test-examples:
    name: Test Examples
    runs-on: ubuntu-latest
    steps:
      - name: Checkout code
        uses: actions/checkout@v4

      - name: Set up Python 3.11
        uses: actions/setup-python@v5
        with:
          python-version: "3.11"

      - name: Install uv
        uses: astral-sh/setup-uv@v3
        with:
          version: "latest"

      - name: Install dependencies with viz extras
        run: |
          uv pip install --system -e ".[viz]"
          uv pip install --system jupyterlab pandas statsmodels

      - name: Check example notebooks can be read
        run: |
          python -c "import nbformat; nbformat.read('examples/airpassengers_dataset.ipynb', as_version=4)"
          python -c "import nbformat; nbformat.read('examples/toy_example.ipynb', as_version=4)"
          python -c "import nbformat; nbformat.read('examples/limix_classification_example.ipynb', as_version=4)"
          python -c "import nbformat; nbformat.read('examples/limix_regression_example.ipynb', as_version=4)"

      - name: Verify eval package imports
        run: |
          python -c "from faim_sdk.eval import mse, mase, crps_from_quantiles, plot_forecast; print('Eval imports successful')"