About datasets used in your paper: How to get Layer structure labels of STARmap dataset?

[BinDuan]

Congratulations for this nice work!
I am very interested in the performace for STARmap datasets and I wonder how do you get the layer structure label of STARmap dataset, because I can't find it in the website you provide.
I'll appreciate it if you can explain this or provide the layer structure label.

Thanks!

[xiao-kong-long]

Hello, I have similar problem with you, I can't find the 'tissue_positions_list.csv' in tutorial 2, I don't know whether you find it

[xiao-kong-long]

Hello, I have similar problem with you, I can't find the 'tissue_positions_list.csv' in tutorial 2, I don't know whether you find it

I find it in there

[BinDuan]

Hello, I have similar problem with you, I can't find the 'tissue_positions_list.csv' in tutorial 2, I don't know whether you find it

I find it in there

Thank you for your sharing, can you share the website?

[xiao-kong-long]

Hello, I have similar problem with you, I can't find the 'tissue_positions_list.csv' in tutorial 2, I don't know whether you find it

I find it in there

Thank you for your sharing, can you share the website?

hello, it's dataset in tutorial 2, maybe not useful to you

[RucDongLab]

We add a Tutorial of the ISH-based STARmap dataset (i.e. the Fig. S16 of the STAGATE paper) at https://stagate.readthedocs.io/en/latest/T9_STARmap.html. The layer annotation of the STARmap data are provided by the SpaGCN paper, and you can found it at the adata.obs['labels'] in our tutorial.

[BinDuan]

We add a Tutorial of the ISH-based STARmap dataset (i.e. the Fig. S16 of the STAGATE paper) at https://stagate.readthedocs.io/en/latest/T9_STARmap.html. The layer annotation of the STARmap data are provided by the SpaGCN paper, and you can found it at the adata.obs['labels'] in our tutorial.

Thank you so much!