diff --git a/tutorials/tutorial_1/containers/data-prep/dataprep_gc.py b/tutorials/tutorial_1/containers/data-prep/dataprep_gc.py index 77cf46f..3071d39 100644 --- a/tutorials/tutorial_1/containers/data-prep/dataprep_gc.py +++ b/tutorials/tutorial_1/containers/data-prep/dataprep_gc.py @@ -18,10 +18,9 @@ def convert_dcm_image_to_jpg(name): def dataset_dcm_to_jpg(dataset_df): input_dir = '/input/dicom_data/' - output_dir = '/output/file_data/' + output_dir = '/output/0/file_data/' dcm_list = glob.glob(input_dir + '/*/*.dcm') - dataset_df['JPG_file'] = 'Nan' for dcm_file in dcm_list: image = convert_dcm_image_to_jpg(dcm_file) jpg_file_name = dcm_file.split('/')[-1].split('.dcm')[0] + '.jpg' @@ -52,5 +51,5 @@ def dataset_dcm_to_jpg(dataset_df): dataset = dataset_dcm_to_jpg(dataset) # Write dataset to /output - dataset.to_csv('/output/dataset.csv', index=False) + dataset.to_csv('/output/0/dataset.csv', index=False)