This repository was archived by the owner on Oct 25, 2018. It is now read-only.
-
Notifications
You must be signed in to change notification settings - Fork 8
This repository was archived by the owner on Oct 25, 2018. It is now read-only.
datalad error #23
Copy link
Copy link
Open
Description
first: known error - see datalad/datalad-container#43)
second: see after this error
$ datalad containers-run -m "sub-02 1st-level GLM" \
> --input sub-02/onsets \
> --input sub-02/1stlvl_design.fsf \
> --input inputs/rawdata/sub-02/func/sub-02_task-oneback_run-01_bold.nii.gz \
> --output sub-02/1stlvl_glm.feat \
> feat sub-02/1stlvl_design.fsf
[INFO ] == Command start (output follows) =====
grep: /home/satra/sub-02/1stlvl_design.fsf: No such file or directory
while executing
"exec sh -c "grep -a 'fmri(inmelodic)' $filename | tail -n 1 | awk '{ print \$3 }'" "
(procedure "feat5:load" line 5)
invoked from within
"feat5:load -1 1 ${fsfroot}.fsf"
(file "/usr/lib/fsl/5.0/feat" line 306)
[INFO ] == Command exit (modification check follows) =====
[INFO ] The command had a non-zero exit code. If this is expected, you can save the changes with 'datalad save -r -F.git/COMMIT_EDITMSG .'
Failed to run 'singularity exec .datalad/environments/fsl/image feat sub-02/1stlvl_design.fsf' under '/om/scratch/Fri/satra/training/test-exercises/glm_analysis'. Exit code=
1. out= err=SDEV[00:04][0.15][1%]satra@node025:gl
git-annex has modified changes, therefore the following does not run:
$ datalad run singularity exec -c -B /tmp -H `pwd` .datalad/environments/fsl/image feat sub-02/1stlvl_design.fsf
run(impossible): /om/scratch/Fri/satra/training/test-exercises/glm_analysis (dataset) [unsaved modifications present, cannot detect changes by command]
how should i reset the state?
Reactions are currently unavailable
Metadata
Metadata
Assignees
Labels
No labels