sraFastqheader conversion enhancement

[arcolombo]

so I just encountered yet another SRA header format that is weird man. like, uh, so what am I, uh, supposed to do again? like, uh, figure something out? like, SRA, blows.

so anyway, here is the funky header

@SRR1168340.1 1 length=50
NTAANGAAAGNNNAGGGAAGGGAGCTAATATTTCTAAGGCCAGTTGTGTG
+SRR1168340.1 1 length=50

so the best solution is to add parameters for each required illumina header
machine, runID, lane, tile,positionX,positionY, readNumber, etc and if the header info is missing, then put the parameter input into the header. currently I assume only some missing header, the above header is missing pretty much all data. so I need a more complex way to handle this, which is full control of header over-write from user input parameter stuffs

AC