Fixed name of all queries to be consistent (added a colon).

scaramonche · scaramonche · commit f2a1293f96c8 · 2023-01-24T16:27:52.000+01:00
diff --git a/src/main/java/edu/ucsf/rbvi/stringApp/internal/tasks/CrossSpeciesSearchTaskFactory.java b/src/main/java/edu/ucsf/rbvi/stringApp/internal/tasks/CrossSpeciesSearchTaskFactory.java
@@ -75,7 +75,7 @@ public class CrossSpeciesSearchTaskFactory extends AbstractNetworkSearchTaskFact
 	StringManager manager;
 	static String CROSS_SPECIES_ID = "edu.ucsf.rbvi.x-species";
 	static String CROSS_SPECIES_URL = "http://string-db.org";
-	static String CROSS_SPECIES_NAME = "STRING cross-species query";
+	static String CROSS_SPECIES_NAME = "STRING: cross-species query";
 	static String CROSS_SPECIES_DESC = "Search STRING for protein-protein interactions across species";
 	static String CROSS_SPECIES_DESC_LONG =  "<html>The cross-species query retrieves a STRING network for all proteins <br />"
 											+ "in the two chosen species that have interactions above the chosen cutoff, <br />"
diff --git a/src/main/java/edu/ucsf/rbvi/stringApp/internal/tasks/DiseaseSearchTaskFactory.java b/src/main/java/edu/ucsf/rbvi/stringApp/internal/tasks/DiseaseSearchTaskFactory.java
@@ -33,7 +33,7 @@ public class DiseaseSearchTaskFactory extends AbstractNetworkSearchTaskFactory {
 	StringManager manager;
 	static String DISEASE_ID = "edu.ucsf.rbvi.disease";
 	static String DISEASE_URL = "http://string-db.org";
-	static String DISEASE_NAME = "STRING disease query";
+	static String DISEASE_NAME = "STRING: disease query";
 	static String DISEASE_DESC = "Search STRING for protein-protein interactions";
 	static String DISEASE_DESC_LONG = "<html>The disease query retrieves a STRING network for the top-N human proteins associated <br />"
 										  + "with the queried disease in the DISEASES database. DISEASES is a weekly updated web <br />"
diff --git a/src/main/java/edu/ucsf/rbvi/stringApp/internal/tasks/PubmedSearchTaskFactory.java b/src/main/java/edu/ucsf/rbvi/stringApp/internal/tasks/PubmedSearchTaskFactory.java
@@ -61,7 +61,7 @@ public class PubmedSearchTaskFactory extends AbstractNetworkSearchTaskFactory {
 	StringManager manager;
 	static String PUBMED_ID = "edu.ucsf.rbvi.pubmed";
 	static String PUBMED_URL = "http://string-db.org";
-	static String PUBMED_NAME = "STRING PubMed query";
+	static String PUBMED_NAME = "STRING: PubMed query";
 	static String PUBMED_DESC = "Search STRING for protein-protein interactions based on PubMed queries";
 	static String PUBMED_DESC_LONG =  "<html>The PubMed query retrieves a STRING network pertaining to any topic of interest <br />"
 											+ "based on text mining of PubMed abstracts. STRING is a database of known and <br />"
diff --git a/src/main/java/edu/ucsf/rbvi/stringApp/internal/tasks/StitchSearchTaskFactory.java b/src/main/java/edu/ucsf/rbvi/stringApp/internal/tasks/StitchSearchTaskFactory.java
@@ -41,7 +41,7 @@ public class StitchSearchTaskFactory extends AbstractNetworkSearchTaskFactory im
 	StringManager manager;
 	static String STITCH_ID = "edu.ucsf.rbvi.stitch";
 	static String STITCH_URL = "http://stitch-db.org";
-	static String STITCH_NAME = "STITCH compound query";
+	static String STITCH_NAME = "STITCH: compound query";
 	static String STITCH_DESC = "Search STITCH for protein-compound interactions";
 	static String STITCH_DESC_LONG = "<html>The compound query retrieves a STITCH network for one or more proteins or compounds. <br />"
 										+ "STITCH is a resource to explore known and predicted interactions of chemicals and <br />"
diff --git a/src/main/java/edu/ucsf/rbvi/stringApp/internal/tasks/StringSearchTaskFactory.java b/src/main/java/edu/ucsf/rbvi/stringApp/internal/tasks/StringSearchTaskFactory.java
@@ -43,7 +43,7 @@ public class StringSearchTaskFactory extends AbstractNetworkSearchTaskFactory im
 	StringManager manager;
 	static String STRING_ID = "edu.ucsf.rbvi.string";
 	static String STRING_URL = "http://string-db.org";
-	static String STRING_NAME = "STRING protein query";
+	static String STRING_NAME = "STRING: protein query";
 	static String STRING_DESC = "Search STRING for protein-protein interactions";
 	static String STRING_DESC_LONG = "<html>The protein query retrieves a STRING network for one or more proteins. <br />"
 										+ "STRING is a database of known and predicted protein interactions for <br />"
diff --git a/stringApp-2.0.1.jar b/stringApp-2.0.1.jar
