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### **Milestone: Cluster-Search Bug-Free Installation with Integration** #### **Description** This milestone focuses on ensuring a seamless and bug-free installation process for the `clust-search` module, along with robust integration into various environments. The goal is to resolve installation-related issues, improve dependency management, and ensure compatibility across different operating systems. Additionally, we aim to enhance the integration workflow for smooth execution in automated pipelines and CI/CD environments. #### **Objectives** - Fix any installation-related bugs to ensure a hassle-free setup. - Ensure compatibility with **Linux, macOS, and Windows**. - Improve dependency resolution and minimize conflicts. - Validate `clust-search` functionality with real-world datasets. - Enhance CI/CD testing to catch integration issues early. - Provide detailed documentation for installation and integration. #### **Expected Outcome** A stable and reliable `clust-search` module that can be installed and executed without issues, with clear instructions and automation for smooth integration. #### **Related Issues** - [ ] Fix installation errors on macOS and Windows. - [ ] Ensure `--output` folder behaves consistently. - [ ] Improve dependency handling in `pyproject.toml` and `requirements.txt`. - [ ] Validate `clust-search` execution across different environments. - [ ] Optimize GitHub Actions workflow for better CI/CD testing. #### **Target Completion Date** *To be determined based on issue resolutions and testing feedback.* This milestone ensures that users can install and use `clust-search` effortlessly, making it a reliable tool for peptide clustering and HLA-type identification. 🚀
Overdue by 11 month(s)•Due by March 4, 2025•2/2 issues closed