Low number of SVs #31
Description
Hi, I have started using cue as I find it a very interesting approach.
As I want to evaluate its performance, I tested it with the HG002 sample (Illumina, ~35X, 2x150bp) aligned using BWA-MEM to hg19.
I ran it in docker with default parameters using the cue.v2.pt model and it finished without errors.
I got ~400 SVs in the resulting VCF file. Is this a low number for the whole genome or does it work as expected?
Thank you for your time
Best wishes!