-
Notifications
You must be signed in to change notification settings - Fork 1
Home
Art Poon edited this page Apr 13, 2020
·
51 revisions
Validation experiments:
| Run | Assay Type | Release Date | Published consensus | Differences | Acceptable? |
|---|---|---|---|---|---|
| SRR11177792 | RNA-Seq | 2020-02-25 | MT072688 | sam2conseq reports extra GGTTTATAC at 5' end, and extra AGTGC (run of ?) poly-A at 3' end - all else identical |
|
| SRR10903401 | RNA-Seq | 2020-01-18 | MN988669.1 | sam2conseq reports extra A at 5' end, and poly-A tail |
|
| SRR10903402 | RNA-Seq | 2020-01-18 | MN988668.1 | sam2conseq reports poly-A tail (21 nt + ?) |
|
| SRR10971381 | RNA-Seq | 2020-01-27 | MN908947 | published sequence has 7 nt reported as ? by sam2conseq (6193 A, 6592 A, 7030 T, 29864 G, 29867 T, 29868 G, 29870 C) and an extra 3' ?
|
|
| SRR11241254 | RNA-Seq | 2020-03-04 | MT163716.1 or EPI_ISL_413025 | MT163716: 3 nt diff, poly-A tail absent (see #7); EPI_ISL_413025: same issues as MT163716, plus a large deletion | Y |
| SRR11241255 | RNA-Seq | 2020-03-04 | MT163717.1 | 3 nt differences (29861 A->T, 29862 A->G, 29864 A->C), extra ? on 3' end. |
Y |
| SRR11247075 | RNA-Seq | 2020-03-05 | MT163721.1 | ||
| SRR11247076 | RNA-Seq | 2020-03-05 | MT163720.1 | ||
| SRR11247077 | RNA-Seq | 2020-03-05 | MT163719.1 | ||
| SRR11247078 | RNA-Seq | 2020-03-05 | MT163718.1 | ||
| SRR11278090 | RNA-Seq | 2020-03-09 | EPI_ISL_413601 | ||
| SRR11278091 | RNA-Seq | 2020-03-09 | EPI_ISL_413563 | Exact match except 3' end has extra "?" | Y |
| SRR11278092 | RNA-Seq | 2020-03-09 | EPI_ISL_413562 | ||
| SRR11278164 | RNA-Seq | 2020-03-09 | EPI_ISL_413653 | ||
| SRR11278165 | RNA-Seq | 2020-03-09 | EPI_ISL_413652 | ||
| SRR11278166 | RNA-Seq | 2020-03-09 | EPI_ISL_413651 | ||
| SRR11278167 | RNA-Seq | 2020-03-09 | EPI_ISL_413650 | ||
| SRR11278168 | RNA-Seq | 2020-03-09 | EPI_ISL_413649 | ||
| SRR11140744 | WGS | 2020-02-21 | EPI_ISL_408670 | ||
| SRR11140746 | WGS | 2020-02-21 | EPI_ISL_408670 | Published has extra 3 A's at 3' end | |
| SRR11140748 | WGS | 2020-02-21 | EPI_ISL_408670 | ||
| SRR11140750 | WGS | 2020-02-21 | EPI_ISL_408670 | ||
| SRR11092057 | RNA-Seq | 2020-02-15 | MN996528.1 | ||
| SRR11092058 | RNA-Seq | 2020-02-15 | MN996527.1 | ||
| SRR11092064 | RNA-Seq | 2020-02-15 | MN996531.1 | ||
| SRR11085733 | RNA-Seq | 2020-02-13 | MN611525 | non-human, failure to map | |
| SRR11085736 | RNA-Seq | 2020-02-13 | MN611522 | non-human, failure to map | |
| SRR11085737 | RNA-Seq | 2020-02-13 | MN611521 | non-human, failure to map | |
| SRR11085738 | RNA-Seq | 2020-02-13 | MN611520 | non-human, failure to map | |
| SRR11085740 | RNA-Seq | 2020-02-13 | MN611518 | non-human, failure to map | |
| SRR11085741 | RNA-Seq | 2020-02-13 | MN611517 | non-human, failure to map | |
| SRR11085797 | RNA-Seq | 2020-02-13 | MN996532.1 | ||
| SRR11314339 | RNA-Seq | 2020-03-17 | MT192765 | ||
| SRR11092056 | RNA-Seq | 2020-02-15 | MN996530 | Low coverage, sample is mostly human DNA (known issue) | Y |