Analysis of SRR11241255 #14
Description
Differences table (published MT163717):
| pos (0-index) | published | sam2conseq |
|---|---|---|
| 29860 | A | T |
| 29861 | A | G |
| 29863 | A | C |
| 29897 | - | ? |
The CSV file starts at 7 (0-index), so we have to adjust coordinate systems:
| pos (1-index) | A | C | G | T | insertions |
|---|---|---|---|---|---|
| 29867 | 0 | 0 | 0 | 10 | 0 |
| 29868 | 0 | 0 | 10 | 0 | 0 |
| 29870 | 1 | 97 | 0 | 0 | 0 |
These seem to be genuine base calls in a region of low coverage.
Extra ? seems to be a scripting bug.