From c35edb2caba31f86ee0b8efa9e97afec99f29eca Mon Sep 17 00:00:00 2001 From: Michele Mattioni Date: Wed, 25 May 2016 15:23:30 +0100 Subject: [PATCH 1/3] Added .project to gitignore. --- .gitignore | 1 + 1 file changed, 1 insertion(+) diff --git a/.gitignore b/.gitignore index 4a2bb2d..7a57738 100644 --- a/.gitignore +++ b/.gitignore @@ -2,3 +2,4 @@ proj.user .Rhistory .RData .Rproj.user +.project From 83fd8b1d28c5b93b5b5045edbd976183b406de46 Mon Sep 17 00:00:00 2001 From: Michele Mattioni Date: Wed, 25 May 2016 15:23:50 +0100 Subject: [PATCH 2/3] Added Dockerfile to the repo --- Dockerfile | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) create mode 100644 Dockerfile diff --git a/Dockerfile b/Dockerfile new file mode 100644 index 0000000..a447ca7 --- /dev/null +++ b/Dockerfile @@ -0,0 +1,20 @@ +FROM ubuntu:xenial + +RUN apt-get update && apt-get install -y \ + libcurl4-openssl-dev \ + libxml2-dev \ + apt-transport-https \ + libssl-dev \ + r-base-dev + + +RUN Rscript -e 'source("http://bioconductor.org/biocLite.R"); biocLite("ComplexHeatmap") ; biocLite("VariantAnnotation"); biocLite("Biostrings")' +RUN Rscript -e 'install.packages("devtools", repos="http://cran.uk.r-project.org")' +RUN Rscript -e 'library("devtools"); install_github(repo = "PoisonAlien/maftools")' + + + + + + + From e7a02481cdc002202d5916ae273d1b3b4dc8b438 Mon Sep 17 00:00:00 2001 From: Michele Mattioni Date: Wed, 25 May 2016 15:38:32 +0100 Subject: [PATCH 3/3] Removed not needed new lines. --- Dockerfile | 7 ------- 1 file changed, 7 deletions(-) diff --git a/Dockerfile b/Dockerfile index a447ca7..fd40f0b 100644 --- a/Dockerfile +++ b/Dockerfile @@ -11,10 +11,3 @@ RUN apt-get update && apt-get install -y \ RUN Rscript -e 'source("http://bioconductor.org/biocLite.R"); biocLite("ComplexHeatmap") ; biocLite("VariantAnnotation"); biocLite("Biostrings")' RUN Rscript -e 'install.packages("devtools", repos="http://cran.uk.r-project.org")' RUN Rscript -e 'library("devtools"); install_github(repo = "PoisonAlien/maftools")' - - - - - - -