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Description
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I tried to run the plotMosdepth command with paired tumor/normal and got an error
Command
Please post your commands and the output (errors or any unexpected output)
plotMosdepth(
t_bed = "2002-EC_T.recal.regions.bed.gz",
n_bed = "2002-EC_N.recal.regions.bed.gz",
segment = TRUE,
sample_name = "2002-EC"
)
Error: Can't assign 4 names to a 5-column data.tableSession info
Run sessionInfo() and post the output below
R version 4.3.2 (2023-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 22.04.5 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
time zone: America/New_York
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] maftools_2.16.0
loaded via a namespace (and not attached):
[1] compiler_4.3.2 Matrix_1.6-5 DNAcopy_1.74.1
[4] tools_4.3.2 RColorBrewer_1.1-3 survival_3.8-3
[7] R.methodsS3_1.8.2 splines_4.3.2 grid_4.3.2
[10] data.table_1.15.0 R.utils_2.13.0 R.oo_1.27.1
[13] lattice_0.22-5 Metadata
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