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Benchmark install time

  1. In a Python interpreter with a supported Python version (see currently supported versions), download and install SimulariumIO and all its dependencies by running conda install readdy and then pip install simulariumio[all] --no-cache-dir.

11/18/21

Environment: 2019 MacBook Pro, SimulariumIO 1.4.0, Python 3.9, 100 Mbps connection

  • With all dependencies (step #1 above): ~2.5 minutes
  • With only base dependencies (pip install simulariumio --no-cache-dir): ~20 seconds

Benchmark conversion time

  1. Unless you've already downloaded them, download benchmark files by running download_benchmark_resources.py in a Python interpreter with simulariumio[benchmark] installed. The files will be saved to benchmarks/resources.
  2. Run benchmark_simulariumio.py

11/18/21

Environment: 2019 MacBook Pro, SimulariumIO 1.4.0, Python 3.9

  • 1GB Cytosim file
    • Conversion ran in ~2.5 minutes
    • Total time (including write to file) was ~5 minutes
  • 50MB SpringSaLaD file
    • Conversion ran in ~10 seconds
    • Total time (including write to file) was ~45 seconds