Module 'cptac' has no attribute 'INDEX' #68
Description
A1BG_cross = ov.multi_join({"umich proteomics": "A1BG", "bcm transcriptomics": "A1BG"})
Trace
AttributeError Traceback (most recent call last)
Cell In[17], line 1
----> 1 A1BG_cross = ov.multi_join({"umich proteomics": "A1BG", "bcm transcriptomics": "A1BG"})
File c:\Users\shang\Documents\cptac\venv\Lib\site-packages\cptac\cancers\cancer.py:525, in Cancer.multi_join(self, join_dict, mutations_filter, flatten, levels_to_drop, how, tissue_type)
521 raise DataFrameNotIncludedError(
522 f"{source} {datatype} is not a valid dataframe in the {self.get_cancer_type()} dataset.")
524 # Get the relevant columns
--> 525 columns = self._get_columns(datatype, source, data_key, tissue_type, mutations_filter)
527 # Set flag that mutations data in join_dict
528 if datatype == "somatic_mutation":
File c:\Users\shang\Documents\cptac\venv\Lib\site-packages\cptac\cancers\cancer.py:467, in Cancer._get_columns(self, datatype, source, data_key, tissue_type, mutations_filter)
465 columns = self._get_omics_cols(datatype, source, found_genes or None, tissue_type=tissue_type)
466 else:
--> 467 columns = self._get_omics_cols(datatype, source, data_key or None, tissue_type=tissue_type)
468 # If key belongs to metadata
469 elif datatype in self._valid_metadata_dfs:
File c:\Users\shang\Documents\cptac\venv\Lib\site-packages\cptac\cancers\cancer.py:778, in Cancer._get_omics_cols(self, omics_df_name, source, genes, tissue_type)
775 self._check_df_valid(omics_df_name, source, "omics")
777 # Get our omics df, using get_dataframe to catch invalid requests
--> 778 omics_df = self.get_dataframe(omics_df_name, source, tissue_type).copy()
780 # Process genes parameter
...
--> 126 if local_hash != cptac.INDEX.loc[cptac.INDEX['filename']==prefixed_file, 'checksum'].item():
127 warn(FailedChecksumWarning("Local file and online file have different checksums; redownloading data"))
128 os.remove(file_path)
AttributeError: module 'cptac' has no attribute 'INDEX'