singularity bind path logic #5
Description
the binding strings logic needs some additional work. I think the approach right now is to call os.path functions abspath and realpath on everything. however, this causes headaches down stream because of hpc's often linked storage directories.
it is my opinion that we should move more to logic by which we build a bind string.
<source>:<target>:<mode>
where source is the abspath and realpath derivatives and <target> is the original unprocessed path. allowing recapitulation of expected file paths downstream in singularity