diff --git a/dashboard/analysis.html b/dashboard/analysis.html index 7911f8108..8d8a6c2e1 100644 --- a/dashboard/analysis.html +++ b/dashboard/analysis.html @@ -10,19 +10,19 @@

Dashboard Analysis

OBO Principles by status

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+

Ontologies by number of axioms

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+

Ontologies by number of classes

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+

Ontologies by how many ontologies use it

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+

Different serialisations used

@@ -30,14 +30,12 @@

Different serialisations used

- - - +
syntax RDF/XML SyntaxOWL/XML Syntax
count314
@@ -61,244 +59,277 @@

Breakdown of used Axiom Types

AnnotationAssertion 4 - 5449.25 - 7346.330530 + 13671.00 + 23743.361570 981.0 1179.00 2224.0 - 6494.25 - 16368.0 + 14716.00 + 49255.0 + + + ClassAssertion + 4 + 21.00 + 3.366502 + 19.0 + 19.00 + 19.5 + 21.50 + 26.0 Declaration 4 - 2141.00 - 3490.189393 + 1234.00 + 1678.557118 284.0 324.50 453.5 - 2270.00 - 7373.0 - - - SubClassOf - 4 - 2250.50 - 3886.302227 - 139.0 - 301.00 - 393.0 - 2342.50 - 8077.0 + 1363.00 + 3745.0 DisjointClasses - 3 - 10.50 - 11.030261 - 0.0 - 5.25 - 8.0 - 13.25 - 26.0 + 4 + 267.50 + 507.071658 + 7.0 + 8.50 + 17.5 + 276.50 + 1028.0 EquivalentClasses - 3 - 4.00 - 3.366502 - 0.0 - 2.25 - 4.0 - 5.75 - 8.0 - - - ClassAssertion - 3 - 16.00 - 11.165423 - 0.0 - 14.25 - 19.0 - 20.75 - 26.0 + 4 + 7.25 + 4.349329 + 3.0 + 4.50 + 6.5 + 9.25 + 13.0 - SubPropertyChainOf - 3 - 15.25 - 24.622145 - 0.0 - 2.25 - 4.5 - 17.50 - 52.0 + InverseFunctionalObjectProperty + 4 + 1.00 + 0.000000 + 1.0 + 1.00 + 1.0 + 1.00 + 1.0 FunctionalObjectProperty - 3 - 1.50 + 4 + 2.50 1.290994 - 0.0 - 0.75 - 1.5 - 2.25 - 3.0 + 1.0 + 1.75 + 2.5 + 3.25 + 4.0 + + + ObjectPropertyDomain + 4 + 23.75 + 2.500000 + 21.0 + 22.50 + 23.5 + 24.75 + 27.0 InverseObjectProperties - 3 - 13.50 - 9.746794 - 0.0 - 10.50 - 15.5 - 18.50 + 4 + 18.00 + 3.741657 + 14.0 + 16.25 + 17.5 + 19.25 23.0 - InverseFunctionalObjectProperty - 3 - 0.75 - 0.500000 - 0.0 - 0.75 - 1.0 - 1.00 - 1.0 + SubObjectPropertyOf + 4 + 51.50 + 50.348784 + 25.0 + 25.75 + 27.0 + 52.75 + 127.0 + + + SubClassOf + 4 + 1152.00 + 1691.860908 + 139.0 + 301.00 + 393.0 + 1244.00 + 3683.0 + + + ObjectPropertyRange + 4 + 23.75 + 2.500000 + 21.0 + 22.50 + 23.5 + 24.75 + 27.0 Rule - 3 - 6.75 - 8.381527 - 0.0 - 3.00 + 4 + 7.75 + 7.500000 + 4.0 + 4.00 4.0 7.75 19.0 - ObjectPropertyRange - 3 - 17.75 - 12.093387 - 0.0 + TransitiveObjectProperty + 4 + 7.25 + 4.573474 + 4.0 + 4.75 + 5.5 + 8.00 + 14.0 + + + SubPropertyChainOf + 4 15.75 - 22.0 - 24.00 - 27.0 + 24.226363 + 2.0 + 2.75 + 4.5 + 17.50 + 52.0 - SubObjectPropertyOf - 3 - 45.00 - 56.089215 + EquivalentObjectProperties + 2 + 1.25 + 1.500000 0.0 - 18.75 - 26.5 - 52.75 - 127.0 + 0.00 + 1.0 + 2.25 + 3.0 - ObjectPropertyDomain - 3 - 17.75 - 12.093387 + AnnotationPropertyRangeOf + 2 + 0.50 + 0.577350 0.0 - 15.75 - 22.0 - 24.00 - 27.0 + 0.00 + 0.5 + 1.00 + 1.0 - TransitiveObjectProperty - 3 - 6.25 - 5.795113 + SubAnnotationPropertyOf + 2 + 4.50 + 5.446712 0.0 - 3.75 - 5.5 + 0.00 + 3.5 8.00 - 14.0 + 11.0 - SymmetricObjectProperty + IrrefexiveObjectProperty 2 - 1.00 - 1.414214 + 0.50 + 0.577350 0.0 0.00 0.5 - 1.50 - 3.0 + 1.00 + 1.0 DifferentIndividuals 2 - 0.75 - 0.957427 + 1.00 + 1.154701 0.0 0.00 - 0.5 - 1.25 + 1.0 + 2.00 2.0 - AnnotationPropertyRangeOf - 1 - 0.25 - 0.500000 + SymmetricObjectProperty + 2 + 1.00 + 1.414214 0.0 0.00 - 0.0 - 0.25 - 1.0 + 0.5 + 1.50 + 3.0 - IrrefexiveObjectProperty + ObjectPropertyAssertion 1 - 0.25 - 0.500000 + 8.75 + 17.500000 0.0 0.00 0.0 - 0.25 - 1.0 + 8.75 + 35.0 - EquivalentObjectProperties + DataPropertyDomain 1 - 0.50 - 1.000000 + 1.00 + 2.000000 0.0 0.00 0.0 - 0.50 - 2.0 + 1.00 + 4.0 - SubAnnotationPropertyOf + DataPropertyRange 1 - 2.75 - 5.500000 + 1.00 + 2.000000 0.0 0.00 0.0 - 2.75 - 11.0 + 1.00 + 4.0 - ObjectPropertyAssertion + FunctionalDataProperty 1 - 8.75 - 17.500000 + 1.00 + 2.000000 0.0 0.00 0.0 - 8.75 - 35.0 + 1.00 + 4.0 @@ -322,46 +353,79 @@

Breakdown of used OWL Class Expression constructs

Class 4 - 6601.75 - 11281.724584 + 4331.50 + 6744.967037 464.0 1004.75 1213.5 - 6810.50 - 23516.0 + 4540.25 + 14435.0 - ObjectSomeValuesFrom + ObjectAllValuesFrom 4 - 59.25 - 59.089621 + 5.75 + 1.258306 4.0 - 34.00 - 45.0 - 70.25 + 5.50 + 6.0 + 6.25 + 7.0 + + + ObjectSomeValuesFrom + 4 + 80.75 + 46.614554 + 44.0 + 45.50 + 68.0 + 103.25 143.0 ObjectUnionOf + 4 + 1.75 + 0.957427 + 1.0 + 1.00 + 1.5 + 2.25 + 3.0 + + + ObjectComplementOf 3 - 1.25 - 1.258306 + 1.50 + 1.290994 0.0 0.75 - 1.0 - 1.50 + 1.5 + 2.25 3.0 - ObjectAllValuesFrom + ObjectOneOf 3 - 4.25 - 3.095696 + 2.25 + 1.500000 0.0 + 2.25 + 3.0 3.00 - 5.0 - 6.25 - 7.0 + 3.0 + + + ObjectIntersectionOf + 2 + 9.00 + 10.677078 + 0.0 + 0.00 + 7.5 + 16.50 + 21.0 ObjectHasSelf @@ -375,7 +439,7 @@

Breakdown of used OWL Class Expression constructs

1.0 - ObjectComplementOf + ObjectMinCardinality 2 0.75 0.957427 @@ -385,17 +449,6 @@

Breakdown of used OWL Class Expression constructs

1.25 2.0 - - ObjectOneOf - 2 - 1.50 - 1.732051 - 0.0 - 0.00 - 1.5 - 3.00 - 3.0 - DataSomeValuesFrom 1 @@ -408,26 +461,37 @@

Breakdown of used OWL Class Expression constructs

2.0 - ObjectMinCardinality + DataExactCardinality 1 - 0.50 - 1.000000 + 1.50 + 3.000000 0.0 0.00 0.0 - 0.50 - 2.0 + 1.50 + 6.0 - ObjectIntersectionOf + DataMinCardinality 1 - 3.75 - 7.500000 + 0.25 + 0.500000 + 0.0 + 0.00 + 0.0 + 0.25 + 1.0 + + + ObjectExactCardinality + 1 + 0.25 + 0.500000 0.0 0.00 0.0 - 3.75 - 15.0 + 0.25 + 1.0 @@ -467,9 +531,9 @@

OBO Score (Experimental)

3 - vario - 0.222 - 0.444 + vvo + 0.330 + 0.660 0.0 @@ -494,10 +558,10 @@

OBO Score Summary

score 4.0 - 0.3370 - 0.076690 - 0.222 - 0.33600 + 0.3640 + 0.022745 + 0.33 + 0.36300 0.374 0.37500 0.378 @@ -505,10 +569,10 @@

OBO Score Summary

score_dash 4.0 - 0.6745 - 0.153702 - 0.444 - 0.67275 + 0.7285 + 0.045786 + 0.66 + 0.72675 0.749 0.75075 0.756 @@ -518,7 +582,7 @@

OBO Score Summary

4.0 0.0000 0.000000 - 0.000 + 0.00 0.00000 0.000 0.00000 @@ -529,7 +593,7 @@

OBO Score Summary

OBO dependency graph

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+
\ No newline at end of file diff --git a/dashboard/cmeo/dashboard.html b/dashboard/cmeo/dashboard.html index 4918f7ea8..309520cc3 100644 --- a/dashboard/cmeo/dashboard.html +++ b/dashboard/cmeo/dashboard.html @@ -9,7 +9,7 @@

Dashboard Report - cmeo

Version: http://purl.obolibrary.org/obo/cmeo/releases/2025-12-10/cmeo.owl

-

Date run: 2026-02-26 19:25:09.049222

+

Date run: 2026-03-13 14:37:35.514501

View dashboard results as YAML

Go back to Overview

Error Breakdown

diff --git a/dashboard/cmeo/dashboard.yml b/dashboard/cmeo/dashboard.yml index e4fcdb0c6..cffb808e0 100644 --- a/dashboard/cmeo/dashboard.yml +++ b/dashboard/cmeo/dashboard.yml @@ -3,7 +3,7 @@ base_prefixes: - CMEO - CMEOALT changed: true -date: 2026-02-26 19:25:09.049222 +date: 2026-03-13 14:37:35.514501 metrics: 'Axioms: Breakdown of axiom types': AnnotationAssertion: 3203 diff --git a/dashboard/dashboard-results.json b/dashboard/dashboard-results.json index 646245e4f..c2af7a628 100644 --- a/dashboard/dashboard-results.json +++ b/dashboard/dashboard-results.json @@ -7,7 +7,7 @@ "CMEOALT" ], "changed": true, - "date": "2026-02-26T19:25:09.049222", + "date": "2026-03-13T14:37:35.514501", "metrics": { "Axioms: Breakdown of axiom types": { "AnnotationAssertion": 3203, @@ -166,7 +166,7 @@ "IDPOALT" ], "changed": true, - "date": "2026-02-26T19:25:15.739533", + "date": "2026-03-13T14:37:42.824345", "metrics": { "Axioms: Breakdown of axiom types": { "AnnotationAssertion": 981, @@ -313,7 +313,7 @@ "PREFERALT" ], "changed": true, - "date": "2026-02-26T19:25:22.544020", + "date": "2026-03-13T14:37:49.831629", "metrics": { "Axioms: Breakdown of axiom types": { "AnnotationAssertion": 1245, @@ -458,144 +458,108 @@ { "base_generated": true, "base_prefixes": [ - "VARIO", - "VARIOALT", - "VariO" + "VVO", + "VVOALT" ], "changed": true, - "date": "2026-02-26T19:25:27.489858", + "date": "2026-03-13T14:37:55.635142", "metrics": { "Axioms: Breakdown of axiom types": { - "AnnotationAssertion": 16368, - "Declaration": 7373, - "DifferentIndividuals": 1, - "SubClassOf": 8077 - }, - "Axioms: Number of axioms": 31819, - "Entities: % of entities reused": 96.68, - "Entities: Number of annotation properties": 11, - "Entities: Number of classes": 7362, - "Entities: Number of data properties": 0, - "Entities: Number of individuals": 0, - "Entities: Number of object properties": 1, + "AnnotationAssertion": 49255, + "AnnotationPropertyRangeOf": 1, + "ClassAssertion": 20, + "DataPropertyDomain": 4, + "DataPropertyRange": 4, + "Declaration": 3745, + "DifferentIndividuals": 2, + "DisjointClasses": 1028, + "EquivalentClasses": 13, + "EquivalentObjectProperties": 3, + "FunctionalDataProperty": 4, + "FunctionalObjectProperty": 4, + "InverseFunctionalObjectProperty": 1, + "InverseObjectProperties": 18, + "IrrefexiveObjectProperty": 1, + "ObjectPropertyDomain": 24, + "ObjectPropertyRange": 24, + "Rule": 4, + "SubAnnotationPropertyOf": 7, + "SubClassOf": 3683, + "SubObjectPropertyOf": 26, + "SubPropertyChainOf": 2, + "TransitiveObjectProperty": 4 + }, + "Axioms: Number of axioms": 57877, + "Entities: % of entities reused": 100.0, + "Entities: Number of annotation properties": 74, + "Entities: Number of classes": 3597, + "Entities: Number of data properties": 4, + "Entities: Number of individuals": 20, + "Entities: Number of object properties": 53, "Entities: Number of unsatisfiable classes": 0, "Info: Breakdown of OWL class expressions used": { - "Class": 23516, - "ObjectSomeValuesFrom": 4 + "Class": 14435, + "DataExactCardinality": 6, + "DataMinCardinality": 1, + "ObjectAllValuesFrom": 6, + "ObjectComplementOf": 3, + "ObjectExactCardinality": 1, + "ObjectIntersectionOf": 21, + "ObjectMinCardinality": 1, + "ObjectOneOf": 3, + "ObjectSomeValuesFrom": 90, + "ObjectUnionOf": 2 }, - "Info: Does the ontology fall under OWL 2 DL?": false, + "Info: Does the ontology fall under OWL 2 DL?": true, "Info: Experimental OBO score": { - "_dashboard": 0.444, + "_dashboard": 0.66, "_formula": "(1*impact+1*dashboard)/2", "_impact": 0.0, "_impact_external": 0, - "_reuse": 0.967, - "oboscore": 0.222 + "_reuse": 1.0, + "oboscore": 0.33 }, "Info: How many externally documented uses?": 0, "Info: How many ontologies use it?": 0, "Info: Logical consistency": true, - "Info: Syntax": "OWL/XML Syntax", + "Info: Syntax": "RDF/XML Syntax", "Info: Usage of namespaces in axioms": { - "AEO": 2, - "AISM": 3, - "APO": 26, - "APOLLO_SV": 38, - "BSPO": 8, - "BTO": 179, - "CEPH": 2, - "CHEBI": 106, - "CHMO": 2, - "CL": 530, - "CLAO": 9, - "CLO": 2, - "CLYH": 2, - "CMO": 7, - "CTENO": 4, - "CVDO": 2, - "ECAO": 2, - "ECOCORE": 157, - "ENVO": 68, - "ExO": 8, - "FAO": 43, - "FBbt": 6, - "FBcv": 12, - "FMA": 21, - "FOODON": 2, - "FYPO": 6, - "GECKO": 2, - "GENO": 16, - "GO": 371, - "GSSO": 170, - "HOM": 15, - "HP": 15, - "IAO": 7788, - "IDO": 16, - "MF": 5, - "MFOEM": 5, - "MI": 5, - "MONDO": 10, - "MP": 15, - "MPATH": 14, - "MS": 5, - "NBO": 63, - "NCIT": 958, - "OBA": 4, - "OHMI": 3, - "OMP": 48, - "PATO": 2, - "PCO": 11, - "PLANA": 10, - "PO": 87, - "PORO": 4, - "PROCO": 7, - "PW": 4, - "RBO": 19, - "REX": 11, - "SCDO": 6, - "SO": 10, - "SPD": 2, - "STATO": 3, - "SYMP": 2, - "TGMA": 2, - "TO": 5, - "TRANS": 9, - "TXPO": 7, - "UBERON": 132, - "UO": 2, - "VARIOALT": 5, - "VariO": 811, - "WBPhenotype": 5, - "WBbt": 6, - "XAO": 2, - "ZFA": 2, - "obo": 19245, - "oboInOwl": 686, - "prefix_unknown": 123, - "rdf": 173, - "rdfs": 7396, - "skos": 681 + "APOLLO_SV": 22, + "BFO": 355, + "IAO": 43125, + "OBI": 74, + "OMO": 6, + "PATO": 16, + "RO": 122, + "UO": 10, + "dc": 2, + "dc11": 29, + "foaf": 4, + "obo": 13320, + "oboInOwl": 3362, + "owl": 29, + "prefix_unknown": 1, + "rdf": 8, + "rdfs": 3843, + "xsd": 4 }, "Info: Which ontologies use it?": [] }, - "mirror_from": "https://variationontology.org/UberVariO/UberVariO100.xml", - "namespace": "vario", + "mirror_from": "https://raw.githubusercontent.com/edithlaszny/vvo/main/vvo.owl", + "namespace": "vvo", "results": { "FP01 Open": { - "comment": "Missing ontology license.", + "comment": "License should use property 'http://purl.org/dc/terms/license'. Ontology license 'this ontology is distributed under an attribution 4.0 international (cc by 4.0). the license is: https://creativecommons.org/licenses/by/4.0/. copyright: dr edit hlaszny (2026-)' does not match registry license 'https://creativecommons.org/licenses/by/4.0/'.", "status": "ERROR" }, "FP02 Common Format": { - "comment": "OWL syntax (OWL/XML Syntax), but should be RDF/XML", - "status": "WARN" + "status": "PASS" }, "FP03 URIs": { - "comment": "0 invalid IRIs. The Ontology IRI is not valid.", - "file": "fp3", - "status": "ERROR" + "status": "PASS" }, "FP04 Versioning": { - "comment": "Missing version IRI", + "comment": "Version IRI does not resolve", "status": "ERROR" }, "FP05 Scope": { @@ -618,38 +582,37 @@ "status": "PASS" }, "FP12 Naming Conventions": { - "comment": "10 multiple labels. See ROBOT Report for details.", - "status": "ERROR" + "status": "PASS" }, "FP16 Maintenance": { - "comment": "Missing version IRI to check date", - "status": "ERROR" + "comment": "Version IRI does not have date information", + "status": "INFO" }, "FP20 Responsiveness": { "status": "PASS" }, "ROBOT Report": { - "comment": "10 errors, 0 warnings, 0 info messages.", + "comment": "1 errors, 0 warnings, 0 info messages.", "file": "robot_report", "results": { - "ERROR": 10, + "ERROR": 1, "INFO": 0, "WARN": 0 }, "status": "ERROR" } }, - "sha256_hash": "7c87e8847c914983d70caea1ccf22bd048f5a226f90527c31f1ebd84fc8f263e", + "sha256_hash": "d468afc2c9b01e64b4205d20b0d9e9e0d604d07b61d67d265059484b56dd6956", "summary": { - "comment": "7 errors", + "comment": "4 errors", "status": "ERROR", "summary_count": { - "ERROR": 7, - "INFO": 0, - "WARN": 1 + "ERROR": 4, + "INFO": 1, + "WARN": 0 } }, - "version": null + "version": "http://purl.obolibrary.org/obo/vvo/1-001/vvo.owl" } ], "oboscore": { diff --git a/dashboard/dashboard-results.yml b/dashboard/dashboard-results.yml index 802e1503e..11ada2ca6 100644 --- a/dashboard/dashboard-results.yml +++ b/dashboard/dashboard-results.yml @@ -29,7 +29,7 @@ ontologies: - CMEO - CMEOALT changed: true - date: 2026-02-26 19:25:09.049222 + date: 2026-03-13 14:37:35.514501 metrics: 'Axioms: Breakdown of axiom types': AnnotationAssertion: 3203 @@ -162,7 +162,7 @@ ontologies: - IDPO - IDPOALT changed: true - date: 2026-02-26 19:25:15.739533 + date: 2026-03-13 14:37:42.824345 metrics: 'Axioms: Breakdown of axiom types': AnnotationAssertion: 981 @@ -283,7 +283,7 @@ ontologies: - PREFER - PREFERALT changed: true - date: 2026-02-26 19:25:22.544020 + date: 2026-03-13 14:37:49.831629 metrics: 'Axioms: Breakdown of axiom types': AnnotationAssertion: 1245 @@ -403,135 +403,102 @@ ontologies: version: http://purl.obolibrary.org/obo/prefer/releases/2025-12-22/prefer.owl - base_generated: true base_prefixes: - - VARIO - - VARIOALT - - VariO + - VVO + - VVOALT changed: true - date: 2026-02-26 19:25:27.489858 + date: 2026-03-13 14:37:55.635142 metrics: 'Axioms: Breakdown of axiom types': - AnnotationAssertion: 16368 - Declaration: 7373 - DifferentIndividuals: 1 - SubClassOf: 8077 - 'Axioms: Number of axioms': 31819 - 'Entities: % of entities reused': 96.68 - 'Entities: Number of annotation properties': 11 - 'Entities: Number of classes': 7362 - 'Entities: Number of data properties': 0 - 'Entities: Number of individuals': 0 - 'Entities: Number of object properties': 1 + AnnotationAssertion: 49255 + AnnotationPropertyRangeOf: 1 + ClassAssertion: 20 + DataPropertyDomain: 4 + DataPropertyRange: 4 + Declaration: 3745 + DifferentIndividuals: 2 + DisjointClasses: 1028 + EquivalentClasses: 13 + EquivalentObjectProperties: 3 + FunctionalDataProperty: 4 + FunctionalObjectProperty: 4 + InverseFunctionalObjectProperty: 1 + InverseObjectProperties: 18 + IrrefexiveObjectProperty: 1 + ObjectPropertyDomain: 24 + ObjectPropertyRange: 24 + Rule: 4 + SubAnnotationPropertyOf: 7 + SubClassOf: 3683 + SubObjectPropertyOf: 26 + SubPropertyChainOf: 2 + TransitiveObjectProperty: 4 + 'Axioms: Number of axioms': 57877 + 'Entities: % of entities reused': 100.0 + 'Entities: Number of annotation properties': 74 + 'Entities: Number of classes': 3597 + 'Entities: Number of data properties': 4 + 'Entities: Number of individuals': 20 + 'Entities: Number of object properties': 53 'Entities: Number of unsatisfiable classes': 0 'Info: Breakdown of OWL class expressions used': - Class: 23516 - ObjectSomeValuesFrom: 4 - 'Info: Does the ontology fall under OWL 2 DL?': false + Class: 14435 + DataExactCardinality: 6 + DataMinCardinality: 1 + ObjectAllValuesFrom: 6 + ObjectComplementOf: 3 + ObjectExactCardinality: 1 + ObjectIntersectionOf: 21 + ObjectMinCardinality: 1 + ObjectOneOf: 3 + ObjectSomeValuesFrom: 90 + ObjectUnionOf: 2 + 'Info: Does the ontology fall under OWL 2 DL?': true 'Info: Experimental OBO score': - _dashboard: 0.444 + _dashboard: 0.66 _formula: (1*impact+1*dashboard)/2 _impact: 0.0 _impact_external: 0 - _reuse: 0.967 - oboscore: 0.222 + _reuse: 1.0 + oboscore: 0.33 'Info: How many externally documented uses?': 0 'Info: How many ontologies use it?': 0 'Info: Logical consistency': true - 'Info: Syntax': OWL/XML Syntax + 'Info: Syntax': RDF/XML Syntax 'Info: Usage of namespaces in axioms': - AEO: 2 - AISM: 3 - APO: 26 - APOLLO_SV: 38 - BSPO: 8 - BTO: 179 - CEPH: 2 - CHEBI: 106 - CHMO: 2 - CL: 530 - CLAO: 9 - CLO: 2 - CLYH: 2 - CMO: 7 - CTENO: 4 - CVDO: 2 - ECAO: 2 - ECOCORE: 157 - ENVO: 68 - ExO: 8 - FAO: 43 - FBbt: 6 - FBcv: 12 - FMA: 21 - FOODON: 2 - FYPO: 6 - GECKO: 2 - GENO: 16 - GO: 371 - GSSO: 170 - HOM: 15 - HP: 15 - IAO: 7788 - IDO: 16 - MF: 5 - MFOEM: 5 - MI: 5 - MONDO: 10 - MP: 15 - MPATH: 14 - MS: 5 - NBO: 63 - NCIT: 958 - OBA: 4 - OHMI: 3 - OMP: 48 - PATO: 2 - PCO: 11 - PLANA: 10 - PO: 87 - PORO: 4 - PROCO: 7 - PW: 4 - RBO: 19 - REX: 11 - SCDO: 6 - SO: 10 - SPD: 2 - STATO: 3 - SYMP: 2 - TGMA: 2 - TO: 5 - TRANS: 9 - TXPO: 7 - UBERON: 132 - UO: 2 - VARIOALT: 5 - VariO: 811 - WBPhenotype: 5 - WBbt: 6 - XAO: 2 - ZFA: 2 - obo: 19245 - oboInOwl: 686 - prefix_unknown: 123 - rdf: 173 - rdfs: 7396 - skos: 681 + APOLLO_SV: 22 + BFO: 355 + IAO: 43125 + OBI: 74 + OMO: 6 + PATO: 16 + RO: 122 + UO: 10 + dc: 2 + dc11: 29 + foaf: 4 + obo: 13320 + oboInOwl: 3362 + owl: 29 + prefix_unknown: 1 + rdf: 8 + rdfs: 3843 + xsd: 4 'Info: Which ontologies use it?': [] - mirror_from: https://variationontology.org/UberVariO/UberVariO100.xml - namespace: vario + mirror_from: https://raw.githubusercontent.com/edithlaszny/vvo/main/vvo.owl + namespace: vvo results: FP01 Open: - comment: Missing ontology license. + comment: 'License should use property ''http://purl.org/dc/terms/license''. + Ontology license ''this ontology is distributed under an attribution 4.0 international + (cc by 4.0). the license is: https://creativecommons.org/licenses/by/4.0/. + copyright: dr edit hlaszny (2026-)'' does not match registry license ''https://creativecommons.org/licenses/by/4.0/''.' status: ERROR FP02 Common Format: - comment: OWL syntax (OWL/XML Syntax), but should be RDF/XML - status: WARN + status: PASS FP03 URIs: - comment: 0 invalid IRIs. The Ontology IRI is not valid. - file: fp3 - status: ERROR + status: PASS FP04 Versioning: - comment: Missing version IRI + comment: Version IRI does not resolve status: ERROR FP05 Scope: status: PASS @@ -547,27 +514,26 @@ ontologies: FP11 Locus of Authority: status: PASS FP12 Naming Conventions: - comment: 10 multiple labels. See ROBOT Report for details. - status: ERROR + status: PASS FP16 Maintenance: - comment: Missing version IRI to check date - status: ERROR + comment: Version IRI does not have date information + status: INFO FP20 Responsiveness: status: PASS ROBOT Report: - comment: 10 errors, 0 warnings, 0 info messages. + comment: 1 errors, 0 warnings, 0 info messages. file: robot_report results: - ERROR: 10 + ERROR: 1 INFO: 0 WARN: 0 status: ERROR - sha256_hash: 7c87e8847c914983d70caea1ccf22bd048f5a226f90527c31f1ebd84fc8f263e + sha256_hash: d468afc2c9b01e64b4205d20b0d9e9e0d604d07b61d67d265059484b56dd6956 summary: - comment: 7 errors + comment: 4 errors status: ERROR summary_count: - ERROR: 7 - INFO: 0 - WARN: 1 - version: null + ERROR: 4 + INFO: 1 + WARN: 0 + version: http://purl.obolibrary.org/obo/vvo/1-001/vvo.owl diff --git a/dashboard/idpo/dashboard.html b/dashboard/idpo/dashboard.html index 21260221b..a3fb228bb 100644 --- a/dashboard/idpo/dashboard.html +++ b/dashboard/idpo/dashboard.html @@ -9,7 +9,7 @@

Dashboard Report - idpo

Version: http://purl.obolibrary.org/obo/idpo/releases/2025-10-01/idpo.owl

-

Date run: 2026-02-26 19:25:15.739533

+

Date run: 2026-03-13 14:37:42.824345

View dashboard results as YAML

Go back to Overview

Error Breakdown

diff --git a/dashboard/idpo/dashboard.yml b/dashboard/idpo/dashboard.yml index a558414fe..c4c373abf 100644 --- a/dashboard/idpo/dashboard.yml +++ b/dashboard/idpo/dashboard.yml @@ -3,7 +3,7 @@ base_prefixes: - IDPO - IDPOALT changed: true -date: 2026-02-26 19:25:15.739533 +date: 2026-03-13 14:37:42.824345 metrics: 'Axioms: Breakdown of axiom types': AnnotationAssertion: 981 diff --git a/dashboard/index.html b/dashboard/index.html index 8cad4075a..3fa263ee3 100644 --- a/dashboard/index.html +++ b/dashboard/index.html @@ -1,5 +1,5 @@ - OBO Dashboard: New Ontology Requests (2026-02-26) + OBO Dashboard: New Ontology Requests (2026-03-13) "} +{"schemaVersion": 1, "label": "QC", "message": "ERROR 4", "color": "red", "logoSvg": ""} diff --git a/dashboard/vario/dashboard-score-badge.json b/dashboard/vvo/dashboard-score-badge.json similarity index 97% rename from dashboard/vario/dashboard-score-badge.json rename to dashboard/vvo/dashboard-score-badge.json index 9d393e49e..ffe4a9dac 100644 --- a/dashboard/vario/dashboard-score-badge.json +++ b/dashboard/vvo/dashboard-score-badge.json @@ -1 +1 @@ -{"schemaVersion": 1, "label": "OBO Dashboard Score", "message": "44.4 %", "color": "blue", "logoSvg": ""} +{"schemaVersion": 1, "label": "OBO Dashboard Score", "message": "66.0 %", "color": "blue", "logoSvg": ""} diff --git a/dashboard/vario/dashboard.html b/dashboard/vvo/dashboard.html similarity index 72% rename from dashboard/vario/dashboard.html rename to dashboard/vvo/dashboard.html index f691532b6..930ceeedd 100644 --- a/dashboard/vario/dashboard.html +++ b/dashboard/vvo/dashboard.html @@ -1,15 +1,15 @@ - vario Dashboard Report + vvo Dashboard Report
-

Dashboard Report - vario

-

Version: None

-

Date run: 2026-02-26 19:25:27.489858

+

Dashboard Report - vvo

+

Version: http://purl.obolibrary.org/obo/vvo/1-001/vvo.owl

+

Date run: 2026-03-13 14:37:55.635142

View dashboard results as YAML

Go back to Overview

Error Breakdown

@@ -19,7 +19,7 @@

Error Breakdown

-

ERROR - 7 errors

+

ERROR - 4 errors

@@ -46,7 +46,7 @@

Error Breakdown

- + @@ -63,11 +63,11 @@

Error Breakdown

- - + @@ -84,14 +84,14 @@

Error Breakdown

- - + - + @@ -109,7 +109,7 @@

Error Breakdown

- + @@ -252,11 +252,11 @@

Error Breakdown

- - + @@ -273,11 +273,11 @@

Error Breakdown

- - + @@ -326,7 +326,7 @@

ROBOT Report Summary

- + @@ -350,13 +350,51 @@

Ontology metrics

@@ -367,7 +405,7 @@

Ontology metrics

- + @@ -375,7 +413,7 @@

Ontology metrics

- + @@ -383,7 +421,7 @@

Ontology metrics

- + @@ -391,7 +429,7 @@

Ontology metrics

- + @@ -399,7 +437,7 @@

Ontology metrics

- + @@ -407,7 +445,7 @@

Ontology metrics

- + @@ -415,7 +453,7 @@

Ontology metrics

- + @@ -434,9 +472,27 @@

Ontology metrics

@@ -447,7 +503,7 @@

Ontology metrics

- + @@ -458,7 +514,7 @@

Ontology metrics

@@ -503,7 +559,7 @@

Ontology metrics

- + @@ -514,161 +570,41 @@

Ontology metrics

diff --git a/dashboard/vvo/dashboard.yml b/dashboard/vvo/dashboard.yml new file mode 100644 index 000000000..0ab406282 --- /dev/null +++ b/dashboard/vvo/dashboard.yml @@ -0,0 +1,136 @@ +base_generated: true +base_prefixes: +- VVO +- VVOALT +changed: true +date: 2026-03-13 14:37:55.635142 +metrics: + 'Axioms: Breakdown of axiom types': + AnnotationAssertion: 49255 + AnnotationPropertyRangeOf: 1 + ClassAssertion: 20 + DataPropertyDomain: 4 + DataPropertyRange: 4 + Declaration: 3745 + DifferentIndividuals: 2 + DisjointClasses: 1028 + EquivalentClasses: 13 + EquivalentObjectProperties: 3 + FunctionalDataProperty: 4 + FunctionalObjectProperty: 4 + InverseFunctionalObjectProperty: 1 + InverseObjectProperties: 18 + IrrefexiveObjectProperty: 1 + ObjectPropertyDomain: 24 + ObjectPropertyRange: 24 + Rule: 4 + SubAnnotationPropertyOf: 7 + SubClassOf: 3683 + SubObjectPropertyOf: 26 + SubPropertyChainOf: 2 + TransitiveObjectProperty: 4 + 'Axioms: Number of axioms': 57877 + 'Entities: % of entities reused': 100.0 + 'Entities: Number of annotation properties': 74 + 'Entities: Number of classes': 3597 + 'Entities: Number of data properties': 4 + 'Entities: Number of individuals': 20 + 'Entities: Number of object properties': 53 + 'Entities: Number of unsatisfiable classes': 0 + 'Info: Breakdown of OWL class expressions used': + Class: 14435 + DataExactCardinality: 6 + DataMinCardinality: 1 + ObjectAllValuesFrom: 6 + ObjectComplementOf: 3 + ObjectExactCardinality: 1 + ObjectIntersectionOf: 21 + ObjectMinCardinality: 1 + ObjectOneOf: 3 + ObjectSomeValuesFrom: 90 + ObjectUnionOf: 2 + 'Info: Does the ontology fall under OWL 2 DL?': true + 'Info: Experimental OBO score': + _dashboard: 0.66 + _formula: (1*impact+1*dashboard)/2 + _impact: 0.0 + _impact_external: 0 + _reuse: 1.0 + oboscore: 0.33 + 'Info: How many externally documented uses?': 0 + 'Info: How many ontologies use it?': 0 + 'Info: Logical consistency': true + 'Info: Syntax': RDF/XML Syntax + 'Info: Usage of namespaces in axioms': + APOLLO_SV: 22 + BFO: 355 + IAO: 43125 + OBI: 74 + OMO: 6 + PATO: 16 + RO: 122 + UO: 10 + dc: 2 + dc11: 29 + foaf: 4 + obo: 13320 + oboInOwl: 3362 + owl: 29 + prefix_unknown: 1 + rdf: 8 + rdfs: 3843 + xsd: 4 + 'Info: Which ontologies use it?': [] +mirror_from: https://raw.githubusercontent.com/edithlaszny/vvo/main/vvo.owl +namespace: vvo +results: + FP01 Open: + comment: 'License should use property ''http://purl.org/dc/terms/license''. Ontology + license ''this ontology is distributed under an attribution 4.0 international + (cc by 4.0). the license is: https://creativecommons.org/licenses/by/4.0/. copyright: + dr edit hlaszny (2026-)'' does not match registry license ''https://creativecommons.org/licenses/by/4.0/''.' + status: ERROR + FP02 Common Format: + status: PASS + FP03 URIs: + status: PASS + FP04 Versioning: + comment: Version IRI does not resolve + status: ERROR + FP05 Scope: + status: PASS + FP06 Textual Definitions: + status: PASS + FP07 Relations: + status: PASS + FP08 Documented: + status: PASS + FP09 Plurality of Users: + comment: Missing usages + status: ERROR + FP11 Locus of Authority: + status: PASS + FP12 Naming Conventions: + status: PASS + FP16 Maintenance: + comment: Version IRI does not have date information + status: INFO + FP20 Responsiveness: + status: PASS + ROBOT Report: + comment: 1 errors, 0 warnings, 0 info messages. + file: robot_report + results: + ERROR: 1 + INFO: 0 + WARN: 0 + status: ERROR +sha256_hash: d468afc2c9b01e64b4205d20b0d9e9e0d604d07b61d67d265059484b56dd6956 +summary: + comment: 4 errors + status: ERROR + summary_count: + ERROR: 4 + INFO: 1 + WARN: 0 +version: http://purl.obolibrary.org/obo/vvo/1-001/vvo.owl diff --git a/dashboard/vario/fp3.html b/dashboard/vvo/fp3.html similarity index 88% rename from dashboard/vario/fp3.html rename to dashboard/vvo/fp3.html index bab9ed88e..5537470bd 100644 --- a/dashboard/vario/fp3.html +++ b/dashboard/vvo/fp3.html @@ -1,12 +1,12 @@ - IRI Report - vario + IRI Report - vvo
-

IRI Report - vario

+

IRI Report - vvo

Download TSV

Missing ontology license.License should use property 'http://purl.org/dc/terms/license'. Ontology license 'this ontology is distributed under an attribution 4.0 international (cc by 4.0). the license is: https://creativecommons.org/licenses/by/4.0/. copyright: dr edit hlaszny (2026-)' does not match registry license 'https://creativecommons.org/licenses/by/4.0/'. - + + OWL syntax (OWL/XML Syntax), but should be RDF/XML - + + 0 invalid IRIs. The Ontology IRI is not valid.View URIs Report
Missing version IRIVersion IRI does not resolve - + + 10 multiple labels. See ROBOT Report for details. - + + Missing version IRI to check dateVersion IRI does not have date information 10 errors, 0 warnings, 0 info messages.1 errors, 0 warnings, 0 info messages. View ROBOT Report
    -
  • AnnotationAssertion: 16368
  • +
  • AnnotationAssertion: 49255
  • + +
  • AnnotationPropertyRangeOf: 1
  • + +
  • ClassAssertion: 20
  • + +
  • DataPropertyDomain: 4
  • + +
  • DataPropertyRange: 4
  • + +
  • Declaration: 3745
  • + +
  • DifferentIndividuals: 2
  • + +
  • DisjointClasses: 1028
  • + +
  • EquivalentClasses: 13
  • + +
  • EquivalentObjectProperties: 3
  • + +
  • FunctionalDataProperty: 4
  • + +
  • FunctionalObjectProperty: 4
  • -
  • Declaration: 7373
  • +
  • InverseFunctionalObjectProperty: 1
  • -
  • DifferentIndividuals: 1
  • +
  • InverseObjectProperties: 18
  • -
  • SubClassOf: 8077
  • +
  • IrrefexiveObjectProperty: 1
  • + +
  • ObjectPropertyDomain: 24
  • + +
  • ObjectPropertyRange: 24
  • + +
  • Rule: 4
  • + +
  • SubAnnotationPropertyOf: 7
  • + +
  • SubClassOf: 3683
  • + +
  • SubObjectPropertyOf: 26
  • + +
  • SubPropertyChainOf: 2
  • + +
  • TransitiveObjectProperty: 4
Axioms: Number of axioms3181957877
Entities: % of entities reused96.68100.0
Entities: Number of annotation properties1174
Entities: Number of classes73623597
Entities: Number of data properties04
Entities: Number of individuals020
Entities: Number of object properties153
    -
  • Class: 23516
  • +
  • Class: 14435
  • + +
  • DataExactCardinality: 6
  • + +
  • DataMinCardinality: 1
  • + +
  • ObjectAllValuesFrom: 6
  • + +
  • ObjectComplementOf: 3
  • -
  • ObjectSomeValuesFrom: 4
  • +
  • ObjectExactCardinality: 1
  • + +
  • ObjectIntersectionOf: 21
  • + +
  • ObjectMinCardinality: 1
  • + +
  • ObjectOneOf: 3
  • + +
  • ObjectSomeValuesFrom: 90
  • + +
  • ObjectUnionOf: 2
Info: Does the ontology fall under OWL 2 DL?FalseTrue
    -
  • _dashboard: 0.444
  • +
  • _dashboard: 0.66
  • _formula: (1*impact+1*dashboard)/2
  • @@ -466,9 +522,9 @@

    Ontology metrics

  • _impact_external: 0
  • -
  • _reuse: 0.967
  • +
  • _reuse: 1.0
  • -
  • oboscore: 0.222
  • +
  • oboscore: 0.33
Info: SyntaxOWL/XML SyntaxRDF/XML Syntax
    -
  • AEO: 2
  • - -
  • AISM: 3
  • - -
  • APO: 26
  • - -
  • APOLLO_SV: 38
  • - -
  • BSPO: 8
  • - -
  • BTO: 179
  • - -
  • CEPH: 2
  • - -
  • CHEBI: 106
  • - -
  • CHMO: 2
  • - -
  • CL: 530
  • - -
  • CLAO: 9
  • - -
  • CLO: 2
  • - -
  • CLYH: 2
  • - -
  • CMO: 7
  • - -
  • CTENO: 4
  • - -
  • CVDO: 2
  • - -
  • ECAO: 2
  • - -
  • ECOCORE: 157
  • - -
  • ENVO: 68
  • - -
  • ExO: 8
  • - -
  • FAO: 43
  • - -
  • FBbt: 6
  • - -
  • FBcv: 12
  • - -
  • FMA: 21
  • - -
  • FOODON: 2
  • - -
  • FYPO: 6
  • - -
  • GECKO: 2
  • - -
  • GENO: 16
  • - -
  • GO: 371
  • - -
  • GSSO: 170
  • - -
  • HOM: 15
  • - -
  • HP: 15
  • - -
  • IAO: 7788
  • - -
  • IDO: 16
  • - -
  • MF: 5
  • - -
  • MFOEM: 5
  • - -
  • MI: 5
  • - -
  • MONDO: 10
  • - -
  • MP: 15
  • - -
  • MPATH: 14
  • - -
  • MS: 5
  • - -
  • NBO: 63
  • - -
  • NCIT: 958
  • - -
  • OBA: 4
  • - -
  • OHMI: 3
  • - -
  • OMP: 48
  • - -
  • PATO: 2
  • - -
  • PCO: 11
  • - -
  • PLANA: 10
  • - -
  • PO: 87
  • - -
  • PORO: 4
  • - -
  • PROCO: 7
  • - -
  • PW: 4
  • - -
  • RBO: 19
  • - -
  • REX: 11
  • - -
  • SCDO: 6
  • - -
  • SO: 10
  • - -
  • SPD: 2
  • - -
  • STATO: 3
  • - -
  • SYMP: 2
  • - -
  • TGMA: 2
  • +
  • APOLLO_SV: 22
  • -
  • TO: 5
  • +
  • BFO: 355
  • -
  • TRANS: 9
  • +
  • IAO: 43125
  • -
  • TXPO: 7
  • +
  • OBI: 74
  • -
  • UBERON: 132
  • +
  • OMO: 6
  • -
  • UO: 2
  • +
  • PATO: 16
  • -
  • VARIOALT: 5
  • +
  • RO: 122
  • -
  • VariO: 811
  • +
  • UO: 10
  • -
  • WBPhenotype: 5
  • +
  • dc: 2
  • -
  • WBbt: 6
  • +
  • dc11: 29
  • -
  • XAO: 2
  • +
  • foaf: 4
  • -
  • ZFA: 2
  • +
  • obo: 13320
  • -
  • obo: 19245
  • +
  • oboInOwl: 3362
  • -
  • oboInOwl: 686
  • +
  • owl: 29
  • -
  • prefix_unknown: 123
  • +
  • prefix_unknown: 1
  • -
  • rdf: 173
  • +
  • rdf: 8
  • -
  • rdfs: 7396
  • +
  • rdfs: 3843
  • -
  • skos: 681
  • +
  • xsd: 4
diff --git a/dashboard/vario/fp3.tsv b/dashboard/vvo/fp3.tsv similarity index 100% rename from dashboard/vario/fp3.tsv rename to dashboard/vvo/fp3.tsv diff --git a/dashboard/vario/fp7.html b/dashboard/vvo/fp7.html similarity index 87% rename from dashboard/vario/fp7.html rename to dashboard/vvo/fp7.html index d8c945760..92747b2d5 100644 --- a/dashboard/vario/fp7.html +++ b/dashboard/vvo/fp7.html @@ -1,12 +1,12 @@ - Relations Report - vario + Relations Report - vvo
-

Relations Report - vario

+

Relations Report - vvo

Download TSV

diff --git a/dashboard/vario/fp7.tsv b/dashboard/vvo/fp7.tsv similarity index 100% rename from dashboard/vario/fp7.tsv rename to dashboard/vvo/fp7.tsv diff --git a/dashboard/vvo/robot_report.html b/dashboard/vvo/robot_report.html new file mode 100644 index 000000000..064706463 --- /dev/null +++ b/dashboard/vvo/robot_report.html @@ -0,0 +1,56 @@ + + + ROBOT Report - vvo + + +
+
+
+

ROBOT Report - vvo

+

Download TSV

+ +

Types of errors

+
+ + + + +
LevelNumber of errors
ERROR1
+

Error breakdown

+
+ + + + +
RuleNumber of errors
missing_ontology_license1
+

+ Click on any term to redirect to the term page. +

+ + + + + + + + + + + + + + + + + + + + + + + +
RowLevelRule NameSubjectPropertyValue
0ERRORmissing_ontology_licensehttp://purl.obolibrary.org/obo/vvo.owldc:license
+
+
+
+ \ No newline at end of file diff --git a/dashboard/vvo/robot_report.tsv b/dashboard/vvo/robot_report.tsv new file mode 100644 index 000000000..e20025179 --- /dev/null +++ b/dashboard/vvo/robot_report.tsv @@ -0,0 +1,2 @@ +Level Rule Name Subject Property Value +ERROR missing_ontology_license http://purl.obolibrary.org/obo/vvo.owl dc:license