From 916fedda1cf7220368927959c2cc108ad1c12b5a Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 23 Jan 2025 00:51:31 +0000 Subject: [PATCH 01/10] Bump notebook from 7.2.1 to 7.2.2 in /docs Bumps [notebook](https://github.com/jupyter/notebook) from 7.2.1 to 7.2.2. - [Release notes](https://github.com/jupyter/notebook/releases) - [Changelog](https://github.com/jupyter/notebook/blob/@jupyter-notebook/tree@7.2.2/CHANGELOG.md) - [Commits](https://github.com/jupyter/notebook/compare/@jupyter-notebook/tree@7.2.1...@jupyter-notebook/tree@7.2.2) --- updated-dependencies: - dependency-name: notebook dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- docs/notebook_requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/notebook_requirements.txt b/docs/notebook_requirements.txt index f3c5dc95..4398ec1f 100644 --- a/docs/notebook_requirements.txt +++ b/docs/notebook_requirements.txt @@ -29,7 +29,7 @@ nbclient==0.10.0 nbconvert==7.16.4 nbformat==5.10.4 nest-asyncio==1.6.0 -notebook==7.2.1 +notebook==7.2.2 numexpr==2.10.1 pandocfilters==1.5.1 parso==0.8.4 From 3e4be1997d8a1017590bbfc9dbedec46bfca7178 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 23 May 2025 19:34:16 +0000 Subject: [PATCH 02/10] Bump tornado from 6.4.2 to 6.5.1 in /docs Bumps [tornado](https://github.com/tornadoweb/tornado) from 6.4.2 to 6.5.1. - [Changelog](https://github.com/tornadoweb/tornado/blob/master/docs/releases.rst) - [Commits](https://github.com/tornadoweb/tornado/compare/v6.4.2...v6.5.1) --- updated-dependencies: - dependency-name: tornado dependency-version: 6.5.1 dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- docs/notebook_requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/notebook_requirements.txt b/docs/notebook_requirements.txt index 4398ec1f..81c4b6e2 100644 --- a/docs/notebook_requirements.txt +++ b/docs/notebook_requirements.txt @@ -48,7 +48,7 @@ soupsieve==2.6 terminado==0.18.1 testpath==0.6.0 tinycss2==1.3.0 -tornado==6.4.2 +tornado==6.5.1 traitlets==5.14.3 wcwidth==0.2.13 webencodings==0.5.1 From 424fc7d991d4239dba202c812c1d26700ba1f8f4 Mon Sep 17 00:00:00 2001 From: cdeline Date: Mon, 23 Jun 2025 15:47:31 -0600 Subject: [PATCH 03/10] statsmodels 0.14.4 is not able to handle the latest scipy. --- setup.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/setup.py b/setup.py index 441b16c0..ed56d3cc 100755 --- a/setup.py +++ b/setup.py @@ -47,7 +47,8 @@ "numpy >= 1.22.4", "pandas >= 1.4.4", "statsmodels >= 0.13.5", - "scipy >= 1.8.1", + # statsmodels 0.14.4 is not able to handle the latest scipy + "scipy >= 1.8.1, <1.16.0", "h5py >= 3.7.0", "plotly>=4.0.0", "xgboost >= 1.6.0", From ea8854e3c0ae33160c9307cb9e128825d52d58f1 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 24 Jun 2025 20:48:39 +0000 Subject: [PATCH 04/10] Bump jinja2 from 3.1.5 to 3.1.6 in /docs Bumps [jinja2](https://github.com/pallets/jinja) from 3.1.5 to 3.1.6. - [Release notes](https://github.com/pallets/jinja/releases) - [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/jinja/compare/3.1.5...3.1.6) --- updated-dependencies: - dependency-name: jinja2 dependency-version: 3.1.6 dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- docs/notebook_requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/notebook_requirements.txt b/docs/notebook_requirements.txt index 4398ec1f..0cee77e6 100644 --- a/docs/notebook_requirements.txt +++ b/docs/notebook_requirements.txt @@ -15,7 +15,7 @@ ipython==8.26.0 ipython-genutils==0.2.0 ipywidgets==8.1.3 jedi==0.19.1 -Jinja2==3.1.5 +Jinja2==3.1.6 jsonschema==4.23.0 jupyter==1.0.0 jupyter-client==8.6.2 From f4b77bb04a1444f530c9d920e122430b7b377b32 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 24 Jun 2025 20:50:34 +0000 Subject: [PATCH 05/10] Bump requests from 2.32.3 to 2.32.4 Bumps [requests](https://github.com/psf/requests) from 2.32.3 to 2.32.4. - [Release notes](https://github.com/psf/requests/releases) - [Changelog](https://github.com/psf/requests/blob/main/HISTORY.md) - [Commits](https://github.com/psf/requests/compare/v2.32.3...v2.32.4) --- updated-dependencies: - dependency-name: requests dependency-version: 2.32.4 dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index 387589a4..d6f4a47b 100644 --- a/requirements.txt +++ b/requirements.txt @@ -20,7 +20,7 @@ python-dateutil==2.9.0 pytz==2024.1 arch==7.0.0 filterpy==1.4.5 -requests==2.32.3 +requests==2.32.4 retrying==1.3.4 scikit-learn==1.5.1 scipy==1.13.1 From e2c387a95891c2f2d0058422024aad5f3c190a7a Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 24 Jun 2025 20:51:19 +0000 Subject: [PATCH 06/10] Bump urllib3 from 2.2.2 to 2.5.0 Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.2.2 to 2.5.0. - [Release notes](https://github.com/urllib3/urllib3/releases) - [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst) - [Commits](https://github.com/urllib3/urllib3/compare/2.2.2...2.5.0) --- updated-dependencies: - dependency-name: urllib3 dependency-version: 2.5.0 dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index 387589a4..9a0ddd05 100644 --- a/requirements.txt +++ b/requirements.txt @@ -30,6 +30,6 @@ statsmodels==0.14.2 threadpoolctl==3.5.0 tomli==2.0.1 typing_extensions==4.12.2 -urllib3==2.2.2 +urllib3==2.5.0 xgboost==2.1.1 From 03e094e020bceb4f87aa1e26f5201f63ca59ef34 Mon Sep 17 00:00:00 2001 From: cdeline Date: Mon, 7 Jul 2025 13:01:19 -0600 Subject: [PATCH 07/10] try setup.py now that statsmodels has a new release. --- setup.py | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/setup.py b/setup.py index ed56d3cc..441b16c0 100755 --- a/setup.py +++ b/setup.py @@ -47,8 +47,7 @@ "numpy >= 1.22.4", "pandas >= 1.4.4", "statsmodels >= 0.13.5", - # statsmodels 0.14.4 is not able to handle the latest scipy - "scipy >= 1.8.1, <1.16.0", + "scipy >= 1.8.1", "h5py >= 3.7.0", "plotly>=4.0.0", "xgboost >= 1.6.0", From 3c43bdb7cbd6c3a5f7150bf4e91909dbf29496ef Mon Sep 17 00:00:00 2001 From: Michael Deceglie Date: Wed, 20 Aug 2025 19:28:16 -0600 Subject: [PATCH 08/10] Update changelog --- docs/sphinx/source/changelog.rst | 1 + docs/sphinx/source/changelog/v3.0.1.rst | 11 +++++++++++ 2 files changed, 12 insertions(+) create mode 100644 docs/sphinx/source/changelog/v3.0.1.rst diff --git a/docs/sphinx/source/changelog.rst b/docs/sphinx/source/changelog.rst index fc3d805a..371f6e00 100644 --- a/docs/sphinx/source/changelog.rst +++ b/docs/sphinx/source/changelog.rst @@ -1,5 +1,6 @@ RdTools Change Log ================== +.. include:: changelog/v3.0.1.rst .. include:: changelog/v3.0.0.rst .. include:: changelog/v2.1.8.rst .. include:: changelog/v2.1.7.rst diff --git a/docs/sphinx/source/changelog/v3.0.1.rst b/docs/sphinx/source/changelog/v3.0.1.rst new file mode 100644 index 00000000..cc941121 --- /dev/null +++ b/docs/sphinx/source/changelog/v3.0.1.rst @@ -0,0 +1,11 @@ +************************* +v3.0.1 (August 20, 2025) +************************* + +Requirements +------------ +* Updated Jinja2==3.1.6 in ``notebook_requirements.txt`` (:pull:`465`) +* Updated tornado==6.5.1 in ``notebook_requirements.txt`` (:pull:`465`) +* Updated requests==2.32.4 in ``requirements.txt`` (:pull:`465`) +* Updated urllib3==2.5.0 in ``requirements.txt`` (:pull:`465`) +* Removed constraint that scipy<1.16.0 (:pull:`465`) \ No newline at end of file From 8060f317773c9a7cc86c59a3ab1a14889064f112 Mon Sep 17 00:00:00 2001 From: Michael Deceglie Date: Wed, 20 Aug 2025 20:12:08 -0600 Subject: [PATCH 09/10] Update release date --- docs/sphinx/source/changelog/v3.0.1.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/sphinx/source/changelog/v3.0.1.rst b/docs/sphinx/source/changelog/v3.0.1.rst index cc941121..9bfaaaa3 100644 --- a/docs/sphinx/source/changelog/v3.0.1.rst +++ b/docs/sphinx/source/changelog/v3.0.1.rst @@ -1,5 +1,5 @@ ************************* -v3.0.1 (August 20, 2025) +v3.0.1 (August 21, 2025) ************************* Requirements From 0fe0f52a696806eac464c28a08d5b1b689b1d042 Mon Sep 17 00:00:00 2001 From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com> Date: Wed, 4 Feb 2026 18:32:13 +0000 Subject: [PATCH 10/10] Initial plan