feat(nmr-cli): update NMRium core packages (#109)

* chore(nmr-cli): update dependencies

* feat(nmr-cli): update nmrium core packages

Author: hamed-musallam

app/scripts/nmr-cli/package-lock.json

@@ -15,24 +15,24 @@
     "nmr-cli": "./build/index.js"
   },
   "dependencies": {
-    "@zakodium/nmr-types": "^0.5.2",
-    "@zakodium/nmrium-core": "^0.6.5",
-    "@zakodium/nmrium-core-plugins": "^0.6.39",
-    "axios": "^1.13.5",
+    "@zakodium/nmr-types": "^0.5.3",
+    "@zakodium/nmrium-core": "^0.7.2",
+    "@zakodium/nmrium-core-plugins": "^0.7.2",
+    "axios": "^1.13.6",
     "fifo-logger": "^2.0.1",
-    "file-collection": "^6.6.0",
+    "file-collection": "^6.6.1",
     "json-stream-stringify": "^3.1.6",
     "lodash.merge": "^4.6.2",
-    "mf-parser": "^3.6.0",
-    "ml-spectra-processing": "^14.20.0",
-    "nmr-processing": "^22.5.0",
+    "mf-parser": "^3.7.1",
+    "ml-spectra-processing": "^14.22.0",
+    "nmr-processing": "^22.5.2",
     "openchemlib": "^9.20.0",
     "playwright": "1.58.2",
     "yargs": "^18.0.0"
   },
   "devDependencies": {
     "@types/lodash.merge": "^4.6.9",
-    "@types/node": "^25.3.0",
+    "@types/node": "^25.3.5",
     "@types/yargs": "^17.0.35",
     "ts-node": "^10.9.2",
     "typescript": "^5.9.3"

app/scripts/nmr-cli/package.json

@@ -210,9 +210,9 @@ async function loadSpectrumFromURL(options: RequiredKey<FileOptionsArgs, 'u'>, l
   }
 
 
-  const [nmriumState] = await core.readFromWebSource(source, { ...parsingOptions, logger });
+  const { state } = await core.readFromWebSource(source, { ...parsingOptions, logger });
 
-  processAndSerialize(nmriumState, options, logger)
+  processAndSerialize(state, options, logger)
 
 }
 
@@ -226,10 +226,10 @@ async function loadSpectrumFromFilePath(options: RequiredKey<FileOptionsArgs, 'd
   })
 
   const {
-    nmriumState
+    state
   } = await core.read(fileCollection, { ...parsingOptions, logger })
 
-  processAndSerialize(nmriumState, options, logger)
+  processAndSerialize(state, options, logger)
 
 }