diff --git a/readme.html b/README.md similarity index 67% rename from readme.html rename to README.md index 84e6cf3..8e256d1 100644 --- a/readme.html +++ b/README.md @@ -1,33 +1,35 @@ -
This is the readme for the model associated with the paper: -R.A.J. van Elburg and A. van Ooyen, `Generalization of the event-based -Carnevale-Hines integration scheme for integrate-and-fire models', -Neural Computation, July 2009, Vol. 21, No. 7: 1913-1930. -(doi:10.1162/neco.2009.07-08-815 ) +R.A.J. van Elburg and A. van Ooyen, *Generalization of the event-based +Carnevale-Hines integration scheme for integrate-and-fire models*, +*Neural Computation*, July 2009, Vol. 21, No. 7: 1913-1930. +(doi:10.1162/neco.2009.07-08-815) -Files: +## Files: Actual implementation of the generalized IntFire4 mechanism, called - IntFire4r: intfire4r.mod - +IntFire4r: intfire4r.mod + Hoc-file defining a network of IntFire4r cells: IF4rNetwork.hoc - + Session files bringing up a little GUI for plotting model behavior in 4 different initial conditions: - IF4rFigures.hoc +IF4rFigures.hoc -Execution: +## Execution: After compilation of intfire4r.mod (mknrndll with PC and MAC, nrnivmodl under linux) run IF4rFigures.hoc in NEURON. This will load intfire4r cells and bring up a panel with four choices ++,+-,-+,-- and -three graphs. The first+/- indicates whether the model starts with a +three graphs. The first +/- indicates whether the model starts with a positive (+) or negative (-) dm/dt, the second +/- indicates whether the model starts above (+) or below (-) m=0. The graphs show the currents e (E), i2 (I) and the membrane potential m (M). For example running "++" will generate figures such as: -+ + +--- + +2025-06-02: Converted README to Markdown. \ No newline at end of file-