From ec0d037ca5c848b1c71f7d0815e6ba27661d00b6 Mon Sep 17 00:00:00 2001 From: Andrew Mitchell Date: Fri, 27 Mar 2026 01:58:02 +0000 Subject: [PATCH 01/12] Adds docs site generator configuration Introduces a dedicated documentation configuration and pins the required tooling so local and CI builds stay in sync. Improves navigation, theming, social links, and rendering defaults to make reference docs easier to browse and more consistent. --- pyproject.toml | 1 + zensical.toml | 113 +++++++++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 114 insertions(+) create mode 100644 zensical.toml diff --git a/pyproject.toml b/pyproject.toml index 056e97c..74eae44 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -25,6 +25,7 @@ docs = [ "mkdocstrings[python]>=0.30.1", "rich>=14.1.0", "shtab>=1.7.2", + "zensical>=0.0.29", ] test = [ "hypothesis>=6.140.3", diff --git a/zensical.toml b/zensical.toml new file mode 100644 index 0000000..60fe10d --- /dev/null +++ b/zensical.toml @@ -0,0 +1,113 @@ +[project] +copyright = "© 2026 Andrew Mitchell" +extra_css = [ + "https://unpkg.com/katex@0/dist/katex.min.css", + "stylesheets/extra.css", +] +extra_javascript = [ + "https://unpkg.com/katex@0/dist/contrib/auto-render.min.js", + "https://unpkg.com/katex@0/dist/katex.min.js", + "javascripts/katex.js", +] +nav = [ + {"API Reference" = [ + "api/data.md", + "api/index.md", + "api/models.md", + "api/plots.md", + "api/ssm.md", + {"Analysis" = [ + "api/analysis/bootstrap.md", + "api/analysis/corr_analysis.md", + "api/analysis/mean_analysis.md", + "api/analysis/ssm_analyze.md", + ]}, + {"Core" = [ + "api/core/parameters.md", + "api/core/scores.md", + ]}, + {"Utilities" = [ + "api/utils/angles.md", + "api/utils/contrast.md", + "api/utils/tidying_functions.md", + ]}, + ]}, + {"Home" = "index.md"}, + {"License" = "license.md"}, +] +repo_name = "MitchellAcoustics/circumplex" +repo_url = "https://github.com/MitchellAcoustics/circumplex/" +site_author = "Andrew Mitchell" +site_description = "Documentation website for Circumplex" +site_name = "Circumplex" +site_url = "https://drandrewmitchell.com/circumplex/" + +[[project.extra.social]] +icon = "fontawesome/brands/github" +link = "https://github.com/MitchellAcoustics" + +[project.plugins.mkdocstrings.handlers.python] +inventories = ["https://docs.python.org/3/objects.inv"] +paths = ["src"] + +[project.plugins.mkdocstrings.handlers.python.options] +docstring_section_style = "spacy" +docstring_style = "numpy" +members_order = "source" +merge_init_into_class = true +modernize_annotations = true +overloads_only = true +separate_signature = true +show_overloads = true +show_root_heading = true +show_signature = true +show_signature_annotations = true +show_signature_type_parameters = true +show_source = true +show_submodules = true +show_symbol_type_heading = true +show_symbol_type_toc = true +summary = true + +[project.theme] +favicon = "img/favicon.png" +features = [ + "content.action.edit", + "content.action.view", + "content.code.copy", + "content.tooltips", + "navigation.footer", + "navigation.indexes", + "navigation.instant", + "navigation.instant.prefetch", + "navigation.instant.progress", + "navigation.path", + "navigation.prune", + "navigation.sections", + "navigation.tabs", + "navigation.top", +] +logo = "img/small-logo.png" +font.code = "Fira Code" + +[project.theme.icon] +repo = "fontawesome/brands/github" + +# Palette toggle for automatic mode +[[project.theme.palette]] +media = "(prefers-color-scheme)" +toggle.icon = "lucide/sun-moon" +toggle.name = "Switch to light mode" + +# Palette toggle for dark mode +[[project.theme.palette]] +media = "(prefers-color-scheme: light)" +scheme = "default" +toggle.icon = "lucide/sun" +toggle.name = "Switch to dark mode" + +[[project.theme.palette]] +media = "(prefers-color-scheme: dark)" +scheme = "slate" +toggle.icon = "lucide/moon" +toggle.name = "Switch to system preference" From dc88e86e5734dcc8610a33b47d38b9d4d4eedea0 Mon Sep 17 00:00:00 2001 From: Andrew Mitchell Date: Fri, 27 Mar 2026 01:58:02 +0000 Subject: [PATCH 02/12] Improves API reference page metadata Adds per-page icon metadata and normalizes directive formatting so generated reference pages render consistently with the new documentation theme. Improves scanability in navigation and reduces formatting noise that can cause uneven output. --- docs/api/analysis/bootstrap.md | 4 +++- docs/api/analysis/corr_analysis.md | 5 ++++- docs/api/analysis/mean_analysis.md | 5 ++++- docs/api/analysis/ssm_analyze.md | 5 ++++- docs/api/core/parameters.md | 5 ++++- docs/api/core/scores.md | 5 ++++- docs/api/data.md | 5 ++++- docs/api/index.md | 1 - docs/api/models.md | 5 ++++- docs/api/plots.md | 5 ++++- docs/api/ssm.md | 5 ++++- docs/api/utils/angles.md | 5 ++++- docs/api/utils/contrast.md | 5 ++++- docs/api/utils/tidying_functions.md | 5 ++++- 14 files changed, 51 insertions(+), 14 deletions(-) diff --git a/docs/api/analysis/bootstrap.md b/docs/api/analysis/bootstrap.md index cb73a54..4684840 100644 --- a/docs/api/analysis/bootstrap.md +++ b/docs/api/analysis/bootstrap.md @@ -1,6 +1,8 @@ +--- +icon: lucide/arrow-up-wide-narrow +--- # Bootstrap ::: circumplex.analysis.bootstrap options: heading_level: 2 -::: diff --git a/docs/api/analysis/corr_analysis.md b/docs/api/analysis/corr_analysis.md index 8218525..0ad265a 100644 --- a/docs/api/analysis/corr_analysis.md +++ b/docs/api/analysis/corr_analysis.md @@ -1,6 +1,9 @@ +--- +icon: lucide/chart-scatter +--- + # Correlation Analysis ::: circumplex.analysis.corr_analysis options: heading_level: 2 -::: diff --git a/docs/api/analysis/mean_analysis.md b/docs/api/analysis/mean_analysis.md index addff39..6e01a9a 100644 --- a/docs/api/analysis/mean_analysis.md +++ b/docs/api/analysis/mean_analysis.md @@ -1,6 +1,9 @@ +--- +icon: lucide/diff +--- + # Mean Analysis ::: circumplex.analysis.mean_analysis options: heading_level: 2 -::: diff --git a/docs/api/analysis/ssm_analyze.md b/docs/api/analysis/ssm_analyze.md index b8f7705..26d1c9e 100644 --- a/docs/api/analysis/ssm_analyze.md +++ b/docs/api/analysis/ssm_analyze.md @@ -1,6 +1,9 @@ +--- +icon: material/sine-wave +--- + # SSM Analysis ::: circumplex.analysis.ssm_analyze options: heading_level: 2 -::: diff --git a/docs/api/core/parameters.md b/docs/api/core/parameters.md index 6e2232c..76b1cd9 100644 --- a/docs/api/core/parameters.md +++ b/docs/api/core/parameters.md @@ -1,6 +1,9 @@ +--- +icon: lucide/variable +--- + # Parameters ::: circumplex.core.parameters options: heading_level: 2 -::: diff --git a/docs/api/core/scores.md b/docs/api/core/scores.md index 5a43dd2..fa18f8f 100644 --- a/docs/api/core/scores.md +++ b/docs/api/core/scores.md @@ -1,6 +1,9 @@ +--- +icon: lucide/file-digit +--- + # Scores ::: circumplex.core.scores options: heading_level: 2 -::: diff --git a/docs/api/data.md b/docs/api/data.md index 7a1bfcb..a45dc1f 100644 --- a/docs/api/data.md +++ b/docs/api/data.md @@ -1,6 +1,9 @@ +--- +icon: lucide/layers +--- + # Data ::: circumplex.data options: heading_level: 2 -::: diff --git a/docs/api/index.md b/docs/api/index.md index 8e5f480..637b07d 100644 --- a/docs/api/index.md +++ b/docs/api/index.md @@ -4,4 +4,3 @@ options: heading_level: 2 members: [] -::: diff --git a/docs/api/models.md b/docs/api/models.md index 0979fe5..738f9d1 100644 --- a/docs/api/models.md +++ b/docs/api/models.md @@ -1,6 +1,9 @@ +--- +icon: lucide/package +--- + # Instrument Models ::: circumplex.instruments.models options: heading_level: 2 -::: diff --git a/docs/api/plots.md b/docs/api/plots.md index 4640b47..3aa3f1e 100644 --- a/docs/api/plots.md +++ b/docs/api/plots.md @@ -1,6 +1,9 @@ +--- +icon: lucide/bolt +--- + # Plots ::: circumplex.visualization.plots options: heading_level: 2 -::: diff --git a/docs/api/ssm.md b/docs/api/ssm.md index 1a36d45..43c015b 100644 --- a/docs/api/ssm.md +++ b/docs/api/ssm.md @@ -1,6 +1,9 @@ +--- +icon: lucide/form +--- + # SSM Results ::: circumplex.ssm options: heading_level: 2 -::: diff --git a/docs/api/utils/angles.md b/docs/api/utils/angles.md index 84d1496..fc8f9ad 100644 --- a/docs/api/utils/angles.md +++ b/docs/api/utils/angles.md @@ -1,6 +1,9 @@ +--- +icon: lucide/chart-pie +--- + # Angles ::: circumplex.utils.angles options: heading_level: 2 -::: diff --git a/docs/api/utils/contrast.md b/docs/api/utils/contrast.md index 5eca707..8dc3131 100644 --- a/docs/api/utils/contrast.md +++ b/docs/api/utils/contrast.md @@ -1,6 +1,9 @@ +--- +icon: lucide/git-compare-arrows +--- + # Contrast ::: circumplex.utils.contrast options: heading_level: 2 -::: diff --git a/docs/api/utils/tidying_functions.md b/docs/api/utils/tidying_functions.md index e01156b..34381cf 100644 --- a/docs/api/utils/tidying_functions.md +++ b/docs/api/utils/tidying_functions.md @@ -1,6 +1,9 @@ +--- +icon: lucide/brush-cleaning +--- + # Tidying Functions ::: circumplex.utils.tidying_functions options: heading_level: 2 -::: From 1a32c3cc633f30bb38ea240802f937312a1b596b Mon Sep 17 00:00:00 2001 From: Andrew Mitchell Date: Fri, 27 Mar 2026 01:58:02 +0000 Subject: [PATCH 03/12] Adds workspace Python environment defaults Sets a shared workspace interpreter management default so contributors get predictable local setup behavior in the editor. Reduces onboarding friction and avoids per-user drift in development configuration. --- .vscode/settings.json | 4 ++++ 1 file changed, 4 insertions(+) create mode 100644 .vscode/settings.json diff --git a/.vscode/settings.json b/.vscode/settings.json new file mode 100644 index 0000000..434524d --- /dev/null +++ b/.vscode/settings.json @@ -0,0 +1,4 @@ +{ + "python-envs.defaultEnvManager": "ms-python.python:venv", + "python-envs.pythonProjects": [] +} From b4065d5a66ebb5094339dc52da5d1f321e0b156b Mon Sep 17 00:00:00 2001 From: Andrew Mitchell Date: Fri, 27 Mar 2026 01:58:51 +0000 Subject: [PATCH 04/12] Rewmove deprecated mkdocs config --- mkdocs.yml | 136 ----------------------------------------------------- 1 file changed, 136 deletions(-) delete mode 100644 mkdocs.yml diff --git a/mkdocs.yml b/mkdocs.yml deleted file mode 100644 index b439a5a..0000000 --- a/mkdocs.yml +++ /dev/null @@ -1,136 +0,0 @@ -site_name: "Circumplex" -site_description: "Documentation website for Circumplex" -site_author: "Andrew Mitchell" -site_url: https://drandrewmitchell.com/circumplex/ -copyright: "Copyright © 2025 Andrew Mitchell" -repo_url: "https://github.com/MitchellAcoustics/circumplex/" -repo_name: "MitchellAcoustics/circumplex" -edit_uri: edit/main/docs/ - -validation: - omitted_files: warn - absolute_links: warn - unrecognized_links: warn - -theme: - name: "material" - features: - - content.action.edit - - content.action.view - - navigation.tabs - # - navigation.tabs.sticky - - navigation.top - - navigation.expand - - navigation.path # waiting for general release - - navigation.indexes - - navigation.instant - - content.code.copy - palette: - - media: "(prefers-color-scheme)" - toggle: - icon: material/brightness-auto - name: Switch to light mode - - media: "(prefers-color-scheme: light)" - scheme: default - toggle: - icon: material/brightness-7 - name: Switch to dark mode - - media: "(prefers-color-scheme: dark)" - scheme: slate - toggle: - icon: material/brightness-4 - name: Switch to system preference - icon: - repo: fontawesome/brands/github - -nav: - - Home: index.md - - API Reference: - - api/index.md - - SSM Results: api/ssm.md - - Analysis: - - SSM Analysis: api/analysis/ssm_analyze.md - - Bootstrap: api/analysis/bootstrap.md - - Mean Analysis: api/analysis/mean_analysis.md - - Correlation Analysis: api/analysis/corr_analysis.md - - Core: - - Parameters: api/core/parameters.md - - Scores: api/core/scores.md - - Data: api/data.md - - Instruments: api/models.md - - Utilities: - - Angles: api/utils/angles.md - - Contrast: api/utils/contrast.md - - Tidying Functions: api/utils/tidying_functions.md - - Visualization: api/plots.md - - License: license.md - -markdown_extensions: - - admonition - - footnotes - - pymdownx.details - - pymdownx.arithmatex: - generic: true - - pymdownx.tasklist - - pymdownx.highlight: - anchor_linenums: true - - pymdownx.superfences - - pymdownx.tabbed: - alternate_style: true - - pymdownx.details - - pymdownx.snippets - 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d220c0b6b798e2018cd6d27c293d9d286d4ef971 Mon Sep 17 00:00:00 2001 From: Andrew Mitchell Date: Fri, 27 Mar 2026 01:59:01 +0000 Subject: [PATCH 06/12] chore: update lockfile after dependency updates --- uv.lock | 41 +++++++++++++++++++++++++++++++++++++++++ 1 file changed, 41 insertions(+) diff --git a/uv.lock b/uv.lock index 2581e4c..8dee431 100644 --- a/uv.lock +++ b/uv.lock @@ -303,6 +303,7 @@ dev = [ { name = "twine" }, { name = "ty" }, { name = "xdoctest" }, + { name = "zensical" }, ] docs = [ { name = "mike" }, @@ -316,6 +317,7 @@ docs = [ { name = "mkdocstrings", extra = ["python"] }, { name = "rich" }, { name = "shtab" }, + { name = "zensical" }, ] test = [ { name = "hypothesis" }, @@ -357,6 +359,7 @@ dev = [ { name = "twine", specifier = ">=6.2.0" }, { name = "ty", specifier = ">=0.0.1a21" }, { name = "xdoctest", specifier = ">=1.3.0" }, + { name = "zensical", specifier = ">=0.0.29" }, ] docs = [ { name = "mike", specifier = ">=2.1.3" }, @@ -370,6 +373,7 @@ docs = [ { name = 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hash = "sha256:b36a1c245f2d304965eb4e0a82848379241dc04b865afcc4aab16748587e1923", size = 9721, upload-time = "2017-04-05T20:21:34.189Z" } -wheels = [ - { url = "https://files.pythonhosted.org/packages/f4/24/2a3e3df732393fed8b3ebf2ec078f05546de641fe1b667ee316ec1dcf3b7/webencodings-0.5.1-py2.py3-none-any.whl", hash = "sha256:a0af1213f3c2226497a97e2b3aa01a7e4bee4f403f95be16fc9acd2947514a78", size = 11774, upload-time = "2017-04-05T20:21:32.581Z" }, -] - [[package]] name = "xdoctest" version = "1.3.0" From b8247f50d03f42fbed1d39ef17826cc2a3b449c8 Mon Sep 17 00:00:00 2001 From: Andrew Mitchell Date: Fri, 27 Mar 2026 02:28:07 +0000 Subject: [PATCH 09/12] fix: us tox-uv with bundled uv rather than tox-uv-bare --- .github/workflows/docs.yml | 2 +- .github/workflows/tests.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index 24af05f..865ddb6 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -29,7 +29,7 @@ jobs: cache-dependency-path: "pyproject.toml" - name: Install tox - run: python -m pip install tox tox-uv-bare + run: python -m pip install tox tox-uv - name: Build HTML documentation with tox run: tox r -e docs diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml index 1e218e1..68a0498 100644 --- a/.github/workflows/tests.yml +++ b/.github/workflows/tests.yml @@ -36,7 +36,7 @@ jobs: cache-dependency-path: pyproject.toml - name: Install dependencies - run: python -m pip install tox tox-gh tox-uv-bare + run: python -m pip install tox tox-gh tox-uv - name: Test with tox run: tox run From 39d26fe441e436a2e35ae099eb21dc590d0d1a73 Mon Sep 17 00:00:00 2001 From: Andrew Mitchell Date: Fri, 27 Mar 2026 02:40:50 +0000 Subject: [PATCH 10/12] fix: diable toml sort in zensical nav --- pyproject.toml | 7 ++++--- zensical.toml | 11 ++++------- 2 files changed, 8 insertions(+), 10 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 87dcf78..0292358 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -155,18 +155,19 @@ all = true spaces_indent_inline_array = 4 trailing_comma_inline_array = true overrides."project.classifiers".inline_arrays = false -overrides."project.nav".inline_arrays = false +overrides."project.nav.*".inline_arrays = false +overrides."project.nav.*".inline_tables = false +overrides."project.nav.*".table_keys = false overrides."tool.coverage.paths.source".inline_arrays = false overrides."tool.tox.env.docs.commands".inline_arrays = false -overrides."tool.tox.env_run_base.commands".inline_arrays = false [tool.tox] env_list = ["py311", "py312", "py313"] env_run_base = {commands = [ [ - "pytest", "--cov", "--cov-report=xml", + "pytest", ], ], dependency_groups = [ "test", diff --git a/zensical.toml b/zensical.toml index 03de009..24239c9 100644 --- a/zensical.toml +++ b/zensical.toml @@ -10,12 +10,8 @@ extra_javascript = [ "javascripts/katex.js", ] nav = [ - {"Home" = "index.md"}, {"API Reference" = [ - "api/data.md", "api/index.md", - "api/models.md", - "api/plots.md", "api/ssm.md", {"Analysis" = [ "api/analysis/bootstrap.md", @@ -27,12 +23,16 @@ nav = [ "api/core/parameters.md", "api/core/scores.md", ]}, + "api/data.md", + "api/models.md", {"Utilities" = [ "api/utils/angles.md", "api/utils/contrast.md", "api/utils/tidying_functions.md", ]}, + "api/plots.md", ]}, + {"Home" = "index.md"}, {"License" = "license.md"}, ] repo_name = "MitchellAcoustics/circumplex" @@ -111,6 +111,3 @@ media = "(prefers-color-scheme: dark)" scheme = "slate" toggle.icon = "lucide/moon" toggle.name = "Switch to system preference" - -[tool.tomlsort.overrides."project.nav"] -sort_table_keys = false From e773b8cfcd66bda4be340c3dc0000db03deb05d0 Mon Sep 17 00:00:00 2001 From: Andrew Mitchell Date: Fri, 27 Mar 2026 02:55:29 +0000 Subject: [PATCH 11/12] fix: remove tomlsort from pre-commit --- .pre-commit-config.yaml | 4 --- pyproject.toml | 63 +++++++++++++++++------------------------ zensical.toml | 20 ++++++------- 3 files changed, 36 insertions(+), 51 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index bad482e..c0a60ed 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -14,10 +14,6 @@ repos: rev: v1.5.5 hooks: - id: forbid-tabs - - repo: https://github.com/pappasam/toml-sort - rev: v0.24.2 - hooks: - - id: toml-sort-fix # - repo: https://github.com/pre-commit/mirrors-mypy # rev: v1.16.1 # hooks: diff --git a/pyproject.toml b/pyproject.toml index 0292358..c3961b6 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -11,8 +11,8 @@ dev = [ "tox>=4.30.3", "twine>=6.2.0", "ty>=0.0.1a21", - {include-group = "docs"}, - {include-group = "test"}, + { include-group = "docs" }, + { include-group = "test" }, ] docs = [ "mike>=2.1.3", @@ -31,7 +31,7 @@ test = [ [project] authors = [ - {email = "andrew.mitchell.research@gmail.com", name = "Andrew Mitchell"}, + { email = "andrew.mitchell.research@gmail.com", name = "Andrew Mitchell" }, ] classifiers = [ "Operating System :: POSIX", @@ -73,7 +73,7 @@ repository = "https://github.com/MitchellAcoustics/circumplex" [tool.coverage] omit = ["*/__pycache__/*", "*/tests/*"] -run = {branch = true, parallel = true, source = ["circumplex"]} +run = { branch = true, parallel = true, source = ["circumplex"] } paths.source = ["src", ".tox*/*/lib/python*/site-packages"] [tool.coverage.report] @@ -111,35 +111,35 @@ testpaths = ["tests"] fix = true force-exclude = true lint.ignore = [ - "ANN401", # Dynamically typed expressions (typing.Any) are disallowed in `**kwargs` - "COM812", # trailing commas (ruff-format recommended) - "D417", # argument description in docstring (unreliable) - "ISC001", # simplify implicit str concatenation (ruff-format recommended) - "NPY002", # legacy np.random (required for R parity) + "ANN401", # Dynamically typed expressions (typing.Any) are disallowed in `**kwargs` + "COM812", # trailing commas (ruff-format recommended) + "D417", # argument description in docstring (unreliable) + "ISC001", # simplify implicit str concatenation (ruff-format recommended) + "NPY002", # legacy np.random (required for R parity) "PERF401", # list.extend suggestion (readability over micro-optimization) "PLR0912", # too many branches (acceptable for RTHOR algorithm complexity) "PLR0913", # too many arguments (acceptable for algorithm functions) "PLR2004", # magic value comparison (acceptable for algorithm constants) - "TC002", # type checking blocks (would break runtime imports) - "TC003", # type checking blocks (would break runtime imports) - "UP037", # Remove quotes from type annotation + "TC002", # type checking blocks (would break runtime imports) + "TC003", # type checking blocks (would break runtime imports) + "UP037", # Remove quotes from type annotation ] -lint.per-file-ignores = {"*.ipynb" = [ +lint.per-file-ignores = { "*.ipynb" = [ "T201", # print statement found ], "*demo.py" = [ - "E501", # line-too-long + "E501", # line-too-long "INP001", # File is part of an implicit namespace package. - "T201", # print statement found + "T201", # print statement found ], "tests*" = [ - "ANN001", # missing type annotation for function (test code) - "ANN201", # missing type annotation for self in methods (test code) - "D100", # missing docstring in public module (test code) - "D103", # missing docstring in public function (test code) - "ERA001", # assertRaises(Exception) (test code) - "INP001", # File is part of an implicit namespace package. + "ANN001", # missing type annotation for function (test code) + "ANN201", # missing type annotation for self in methods (test code) + "D100", # missing docstring in public module (test code) + "D103", # missing docstring in public function (test code) + "ERA001", # assertRaises(Exception) (test code) + "INP001", # File is part of an implicit namespace package. "PLR2004", # magic value comparison (test code) - "S101", # Use of `assert` detected -]} + "S101", # Use of `assert` detected +] } lint.select = ["ALL"] lint.isort.known-first-party = ["circumplex"] lint.mccabe.max-complexity = 18 @@ -150,20 +150,9 @@ lint.pydocstyle.convention = "numpy" local_scheme = "no-local-version" write_to = "src/circumplex/_version.py" -[tool.tomlsort] -all = true -spaces_indent_inline_array = 4 -trailing_comma_inline_array = true -overrides."project.classifiers".inline_arrays = false -overrides."project.nav.*".inline_arrays = false -overrides."project.nav.*".inline_tables = false -overrides."project.nav.*".table_keys = false -overrides."tool.coverage.paths.source".inline_arrays = false -overrides."tool.tox.env.docs.commands".inline_arrays = false - [tool.tox] env_list = ["py311", "py312", "py313"] -env_run_base = {commands = [ +env_run_base = { commands = [ [ "--cov", "--cov-report=xml", @@ -171,8 +160,8 @@ env_run_base = {commands = [ ], ], dependency_groups = [ "test", -]} -env.docs = {commands = [["zensical", "build"]], dependency_groups = ["docs"]} +] } +env.docs = { commands = [["zensical", "build"]], dependency_groups = ["docs"] } gh.python."3.11" = ["py311"] gh.python."3.12" = ["py312"] gh.python."3.13" = ["py313"] diff --git a/zensical.toml b/zensical.toml index 24239c9..6d3ea05 100644 --- a/zensical.toml +++ b/zensical.toml @@ -10,30 +10,30 @@ extra_javascript = [ "javascripts/katex.js", ] nav = [ - {"API Reference" = [ + { "Home" = "index.md" }, + { "API Reference" = [ "api/index.md", "api/ssm.md", - {"Analysis" = [ + { "Analysis" = [ "api/analysis/bootstrap.md", "api/analysis/corr_analysis.md", "api/analysis/mean_analysis.md", "api/analysis/ssm_analyze.md", - ]}, - {"Core" = [ + ] }, + { "Core" = [ "api/core/parameters.md", "api/core/scores.md", - ]}, + ] }, "api/data.md", "api/models.md", - {"Utilities" = [ + { "Utilities" = [ "api/utils/angles.md", "api/utils/contrast.md", "api/utils/tidying_functions.md", - ]}, + ] }, "api/plots.md", - ]}, - {"Home" = "index.md"}, - {"License" = "license.md"}, + ] }, + { "License" = "license.md" }, ] repo_name = "MitchellAcoustics/circumplex" repo_url = "https://github.com/MitchellAcoustics/circumplex/" From bebf0dd65ca9a5b8fe0d182df7f7316dc95a62f6 Mon Sep 17 00:00:00 2001 From: Andrew Mitchell Date: Fri, 27 Mar 2026 03:02:24 +0000 Subject: [PATCH 12/12] fix: add pytest command to env_run_base in pyproject.toml --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index c3961b6..7c56295 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -154,9 +154,9 @@ write_to = "src/circumplex/_version.py" env_list = ["py311", "py312", "py313"] env_run_base = { commands = [ [ + "pytest", "--cov", "--cov-report=xml", - "pytest", ], ], dependency_groups = [ "test",