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5843 lines (5613 loc) · 496 KB
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2024-10-31 12:04:02 | INFO | __main__:main:469 | 🚀 QUARTO PAPER FETCHER
2024-10-31 12:04:02 | INFO | __main__:wrapper:70 | ═════════════════════════════ STAGE: Paper Processing ═════════════════════════════
2024-10-31 12:04:02 | INFO | __main__:process:323 | 📑 Processing paper: 2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData
2024-10-31 12:04:02 | DEBUG | __main__:process:324 | Repository URL: https://github.com/MitchellAcoustics/JASAEL-HowToAnalyseQuantitativeSoundscapeData.git
2024-10-31 12:04:02 | DEBUG | __main__:process:325 | Branch: None
2024-10-31 12:04:02 | DEBUG | __main__:process:326 | Commit: None
2024-10-31 12:04:02 | INFO | __main__:wrapper:91 | ▶ Checking repository status
2024-10-31 12:04:02 | INFO | __main__:wrapper:91 | ▶ Cloning repository
2024-10-31 12:04:02 | INFO | __main__:_clone_repo:393 | 📥 Cloning: https://github.com/MitchellAcoustics/JASAEL-HowToAnalyseQuantitativeSoundscapeData.git
2024-10-31 12:04:03 | INFO | __main__:wrapper:91 | ▶ Copying files
2024-10-31 12:04:03 | INFO | __main__:_copy_files:413 | 📋 Starting file copy
2024-10-31 12:04:03 | INFO | __main__:wrapper:91 | ▶ Loading Quarto configuration
2024-10-31 12:04:03 | DEBUG | __main__:_load_config:139 | Loaded config:
execute:
freeze: auto
keep-ipynb: true
format:
elsevier-pdf:
echo: false
hyperrefoptions:
- citecolor=black
journal:
cite-style: authoryear
formatting: preprint
model: 3p
name: JASA-EL
keep-tex: false
latex-output-dir: paper/_tex
output-file: paper.pdf
html:
code-fold: true
comments:
hypothesis: true
output-file: paper.html
self-contained-math: true
toc: true
project:
output-dir: paper
type: default
2024-10-31 12:04:03 | DEBUG | __main__:_determine_project_type:147 | Determined project type: default
2024-10-31 12:04:03 | DEBUG | __main__:_find_main_doc:177 | Searching for main document
2024-10-31 12:04:03 | SUCCESS | __main__:_find_main_doc:188 | Found main document with common name: paper.qmd
2024-10-31 12:04:03 | DEBUG | __main__:__init__:128 | Initialized QuartoProject: type=default, main_doc=paper.qmd
2024-10-31 12:04:03 | INFO | __main__:wrapper:91 | ▶ Analyzing project structure
2024-10-31 12:04:03 | DEBUG | __main__:_get_bibliography_files:204 | Collecting bibliography files
2024-10-31 12:04:03 | INFO | __main__:_get_bibliography_files:215 | Found bibliography files in filesystem:
2024-10-31 12:04:03 | INFO | __main__:_get_bibliography_files:217 | └── references.bib
2024-10-31 12:04:03 | DEBUG | __main__:_get_notebooks:224 | Collecting notebooks for default project
2024-10-31 12:04:03 | DEBUG | __main__:_get_support_directories:264 | Collecting support directories
2024-10-31 12:04:03 | INFO | __main__:_get_support_directories:274 | Found support directories:
2024-10-31 12:04:03 | INFO | __main__:_get_support_directories:276 | └── figures
2024-10-31 12:04:03 | DEBUG | __main__:_get_freeze_directories:281 | Collecting freeze directories for default project
2024-10-31 12:04:03 | SUCCESS | __main__:_get_freeze_directories:290 | Found default project freeze directory: _freeze/paper
2024-10-31 12:04:03 | INFO | __main__:get_files:164 | 📁 Collected files:
2024-10-31 12:04:03 | INFO | __main__:get_files:165 | └── 📄 Standard files:
2024-10-31 12:04:03 | INFO | __main__:get_files:167 | └── _quarto.yml
2024-10-31 12:04:03 | INFO | __main__:get_files:167 | └── figures
2024-10-31 12:04:03 | INFO | __main__:get_files:167 | └── paper.qmd
2024-10-31 12:04:03 | INFO | __main__:get_files:167 | └── references.bib
2024-10-31 12:04:03 | INFO | __main__:get_files:168 | └── 🧊 Freeze files:
2024-10-31 12:04:03 | INFO | __main__:get_files:170 | └── _freeze/paper
2024-10-31 12:04:03 | INFO | __main__:_copy_files:420 | Copying standard files:
2024-10-31 12:04:03 | INFO | __main__:_copy_files:429 | └── Copied file: _quarto.yml
2024-10-31 12:04:03 | INFO | __main__:_copy_files:429 | └── Copied file: references.bib
2024-10-31 12:04:03 | INFO | __main__:_copy_files:432 | └── Copied directory: figures
2024-10-31 12:04:03 | INFO | __main__:_copy_files:429 | └── Copied file: paper.qmd
2024-10-31 12:04:03 | INFO | __main__:_copy_files:438 | Copying freeze files:
2024-10-31 12:04:03 | INFO | __main__:_copy_files:445 | └── Copied freeze directory: _freeze/paper to _freeze/research/papers/2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData/paper
2024-10-31 12:04:03 | INFO | __main__:wrapper:91 | ▶ Saving commit information
2024-10-31 12:04:03 | INFO | __main__:_save_commit:385 | 💾 Saving commit hash: a9f5077d891d5a64816dc18844fbf12e2a2b9dae
2024-10-31 12:04:03 | DEBUG | __main__:_save_commit:388 | Commit hash saved to: research/papers/2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData/last_commit.txt
2024-10-31 12:04:03 | SUCCESS | __main__:process:348 | ✨ Successfully processed paper 2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData
2024-10-31 12:04:03 | INFO | __main__:wrapper:78 | ═════════════════════════════════════════════════════════════════════════════════
2024-10-31 12:04:03 | INFO | __main__:wrapper:70 | ═════════════════════════════ STAGE: Paper Processing ═════════════════════════════
2024-10-31 12:04:03 | INFO | __main__:process:323 | 📑 Processing paper: 2024-10-30_JASA1112_SPI
2024-10-31 12:04:03 | DEBUG | __main__:process:324 | Repository URL: https://github.com/MitchellAcoustics/J2401_JASA_SSID-Single-Index
2024-10-31 12:04:03 | DEBUG | __main__:process:325 | Branch: dev
2024-10-31 12:04:03 | DEBUG | __main__:process:326 | Commit: None
2024-10-31 12:04:03 | INFO | __main__:wrapper:91 | ▶ Checking repository status
2024-10-31 12:04:03 | INFO | __main__:wrapper:91 | ▶ Cloning repository
2024-10-31 12:04:03 | INFO | __main__:_clone_repo:393 | 📥 Cloning: https://github.com/MitchellAcoustics/J2401_JASA_SSID-Single-Index
2024-10-31 12:04:06 | INFO | __main__:wrapper:91 | ▶ Copying files
2024-10-31 12:04:06 | INFO | __main__:_copy_files:413 | 📋 Starting file copy
2024-10-31 12:04:06 | INFO | __main__:wrapper:91 | ▶ Loading Quarto configuration
2024-10-31 12:04:06 | DEBUG | __main__:_load_config:139 | Loaded config:
bibliography: FellowshipRefs-biblatex.bib
execute:
freeze: auto
keep-ipynb: true
format:
elsevier-pdf:
echo: false
hyperrefoptions:
- citecolor=black
journal:
cite-style: authoryear
formatting: preprint
model: 3p
name: Journal of the Acoustical Society of America
keep-tex: false
html:
code-fold: true
comments:
hypothesis: true
self-contained-math: true
toc: true
manuscript:
article: index.qmd
notebooks:
- ./notebooks/SingleIndex-Code.ipynb
- ./notebooks/TargetOptimization.ipynb
project:
output-dir: ./paper/
type: default
2024-10-31 12:04:06 | DEBUG | __main__:_determine_project_type:147 | Determined project type: manuscript
2024-10-31 12:04:06 | DEBUG | __main__:_find_main_doc:177 | Searching for main document
2024-10-31 12:04:06 | SUCCESS | __main__:_find_main_doc:182 | Found main document in manuscript config: index.qmd
2024-10-31 12:04:06 | DEBUG | __main__:__init__:128 | Initialized QuartoProject: type=manuscript, main_doc=index.qmd
2024-10-31 12:04:06 | INFO | __main__:wrapper:91 | ▶ Analyzing project structure
2024-10-31 12:04:06 | DEBUG | __main__:_get_bibliography_files:204 | Collecting bibliography files
2024-10-31 12:04:06 | INFO | __main__:_get_bibliography_files:209 | Found bibliography in config: FellowshipRefs-biblatex.bib
2024-10-31 12:04:06 | INFO | __main__:_get_bibliography_files:215 | Found bibliography files in filesystem:
2024-10-31 12:04:06 | INFO | __main__:_get_bibliography_files:217 | └── FellowshipRefs-biblatex.bib
2024-10-31 12:04:06 | DEBUG | __main__:_get_notebooks:224 | Collecting notebooks for manuscript project
2024-10-31 12:04:06 | INFO | __main__:_get_notebooks:231 | Found notebooks in manuscript config:
2024-10-31 12:04:06 | INFO | __main__:_get_notebooks:233 | └── ./notebooks/SingleIndex-Code.ipynb
2024-10-31 12:04:06 | INFO | __main__:_get_notebooks:233 | └── ./notebooks/TargetOptimization.ipynb
2024-10-31 12:04:06 | INFO | __main__:_get_notebooks:247 | Found embedded notebooks:
2024-10-31 12:04:06 | INFO | __main__:_get_notebooks:249 | └── notebooks/SingleIndex-Code.ipynb
2024-10-31 12:04:06 | INFO | __main__:_get_notebooks:249 | └── notebooks/TargetOptimization.ipynb
2024-10-31 12:04:06 | DEBUG | __main__:_get_support_directories:264 | Collecting support directories
2024-10-31 12:04:06 | INFO | __main__:_get_support_directories:274 | Found support directories:
2024-10-31 12:04:06 | INFO | __main__:_get_support_directories:276 | └── figures
2024-10-31 12:04:06 | INFO | __main__:_get_support_directories:276 | └── notebooks
2024-10-31 12:04:06 | DEBUG | __main__:_get_freeze_directories:281 | Collecting freeze directories for manuscript project
2024-10-31 12:04:06 | INFO | __main__:get_files:164 | 📁 Collected files:
2024-10-31 12:04:06 | INFO | __main__:get_files:165 | └── 📄 Standard files:
2024-10-31 12:04:06 | INFO | __main__:get_files:167 | └── FellowshipRefs-biblatex.bib
2024-10-31 12:04:06 | INFO | __main__:get_files:167 | └── _quarto.yml
2024-10-31 12:04:06 | INFO | __main__:get_files:167 | └── figures
2024-10-31 12:04:06 | INFO | __main__:get_files:167 | └── index.qmd
2024-10-31 12:04:06 | INFO | __main__:get_files:167 | └── notebooks
2024-10-31 12:04:06 | INFO | __main__:get_files:167 | └── notebooks/SingleIndex-Code.ipynb
2024-10-31 12:04:06 | INFO | __main__:get_files:167 | └── notebooks/TargetOptimization.ipynb
2024-10-31 12:04:06 | INFO | __main__:get_files:168 | └── 🧊 Freeze files:
2024-10-31 12:04:06 | INFO | __main__:_copy_files:420 | Copying standard files:
2024-10-31 12:04:06 | INFO | __main__:_copy_files:429 | └── Copied file: _quarto.yml
2024-10-31 12:04:06 | INFO | __main__:_copy_files:429 | └── Copied file: notebooks/TargetOptimization.ipynb
2024-10-31 12:04:06 | INFO | __main__:_copy_files:429 | └── Copied file: FellowshipRefs-biblatex.bib
2024-10-31 12:04:06 | INFO | __main__:_copy_files:432 | └── Copied directory: notebooks
2024-10-31 12:04:06 | INFO | __main__:_copy_files:429 | └── Copied file: index.qmd
2024-10-31 12:04:06 | INFO | __main__:_copy_files:429 | └── Copied file: notebooks/SingleIndex-Code.ipynb
2024-10-31 12:04:06 | INFO | __main__:_copy_files:432 | └── Copied directory: figures
2024-10-31 12:04:06 | INFO | __main__:wrapper:91 | ▶ Saving commit information
2024-10-31 12:04:06 | INFO | __main__:_save_commit:385 | 💾 Saving commit hash: 92d7e82ca139a56def4607a35b14ce6dd1202bdb
2024-10-31 12:04:06 | DEBUG | __main__:_save_commit:388 | Commit hash saved to: research/papers/2024-10-30_JASA1112_SPI/last_commit.txt
2024-10-31 12:04:06 | SUCCESS | __main__:process:348 | ✨ Successfully processed paper 2024-10-30_JASA1112_SPI
2024-10-31 12:04:06 | INFO | __main__:wrapper:78 | ═════════════════════════════════════════════════════════════════════════════════
2024-10-31 12:04:06 | SUCCESS | __main__:main:491 | SUMMARY: ✅ All papers processed successfully (2/2)
2024-10-31 12:06:32 | SUCCESS | __main__:main:469 | 🚀 QUARTO PAPER FETCHER
2024-10-31 12:06:32 | INFO | __main__:wrapper:70 | ═════════════════════════════ STAGE: Paper Processing ═════════════════════════════
2024-10-31 12:06:32 | INFO | __main__:process:323 | 📑 Processing paper: 2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData
2024-10-31 12:06:32 | DEBUG | __main__:process:324 | Repository URL: https://github.com/MitchellAcoustics/JASAEL-HowToAnalyseQuantitativeSoundscapeData.git
2024-10-31 12:06:32 | DEBUG | __main__:process:325 | Branch: None
2024-10-31 12:06:32 | DEBUG | __main__:process:326 | Commit: None
2024-10-31 12:06:32 | INFO | __main__:wrapper:91 | ▶ Checking repository status
2024-10-31 12:06:32 | INFO | __main__:wrapper:91 | ▶ Cloning repository
2024-10-31 12:06:32 | INFO | __main__:_clone_repo:393 | 📥 Cloning: https://github.com/MitchellAcoustics/JASAEL-HowToAnalyseQuantitativeSoundscapeData.git
2024-10-31 12:06:35 | INFO | __main__:wrapper:91 | ▶ Copying files
2024-10-31 12:06:35 | INFO | __main__:_copy_files:413 | 📋 Starting file copy
2024-10-31 12:06:35 | INFO | __main__:wrapper:91 | ▶ Loading Quarto configuration
2024-10-31 12:06:35 | DEBUG | __main__:_load_config:139 | Loaded config:
execute:
freeze: auto
keep-ipynb: true
format:
elsevier-pdf:
echo: false
hyperrefoptions:
- citecolor=black
journal:
cite-style: authoryear
formatting: preprint
model: 3p
name: JASA-EL
keep-tex: false
latex-output-dir: paper/_tex
output-file: paper.pdf
html:
code-fold: true
comments:
hypothesis: true
output-file: paper.html
self-contained-math: true
toc: true
project:
output-dir: paper
type: default
2024-10-31 12:06:35 | DEBUG | __main__:_determine_project_type:147 | Determined project type: default
2024-10-31 12:06:35 | DEBUG | __main__:_find_main_doc:177 | Searching for main document
2024-10-31 12:06:35 | SUCCESS | __main__:_find_main_doc:188 | Found main document with common name: paper.qmd
2024-10-31 12:06:35 | DEBUG | __main__:__init__:128 | Initialized QuartoProject: type=default, main_doc=paper.qmd
2024-10-31 12:06:35 | INFO | __main__:wrapper:91 | ▶ Analyzing project structure
2024-10-31 12:06:35 | DEBUG | __main__:_get_bibliography_files:204 | Collecting bibliography files
2024-10-31 12:06:35 | INFO | __main__:_get_bibliography_files:215 | Found bibliography files in filesystem:
2024-10-31 12:06:35 | INFO | __main__:_get_bibliography_files:217 | └── references.bib
2024-10-31 12:06:35 | DEBUG | __main__:_get_notebooks:224 | Collecting notebooks for default project
2024-10-31 12:06:35 | DEBUG | __main__:_get_support_directories:264 | Collecting support directories
2024-10-31 12:06:35 | INFO | __main__:_get_support_directories:274 | Found support directories:
2024-10-31 12:06:35 | INFO | __main__:_get_support_directories:276 | └── figures
2024-10-31 12:06:35 | DEBUG | __main__:_get_freeze_directories:281 | Collecting freeze directories for default project
2024-10-31 12:06:35 | SUCCESS | __main__:_get_freeze_directories:290 | Found default project freeze directory: _freeze/paper
2024-10-31 12:06:35 | INFO | __main__:get_files:164 | 📁 Collected files:
2024-10-31 12:06:35 | INFO | __main__:get_files:165 | └── 📄 Standard files:
2024-10-31 12:06:35 | INFO | __main__:get_files:167 | └── _quarto.yml
2024-10-31 12:06:35 | INFO | __main__:get_files:167 | └── figures
2024-10-31 12:06:35 | INFO | __main__:get_files:167 | └── paper.qmd
2024-10-31 12:06:35 | INFO | __main__:get_files:167 | └── references.bib
2024-10-31 12:06:35 | INFO | __main__:get_files:168 | └── 🧊 Freeze files:
2024-10-31 12:06:35 | INFO | __main__:get_files:170 | └── _freeze/paper
2024-10-31 12:06:35 | INFO | __main__:_copy_files:420 | Copying standard files:
2024-10-31 12:06:35 | INFO | __main__:_copy_files:432 | └── Copied directory: figures
2024-10-31 12:06:35 | INFO | __main__:_copy_files:429 | └── Copied file: paper.qmd
2024-10-31 12:06:35 | INFO | __main__:_copy_files:429 | └── Copied file: references.bib
2024-10-31 12:06:35 | INFO | __main__:_copy_files:429 | └── Copied file: _quarto.yml
2024-10-31 12:06:35 | INFO | __main__:_copy_files:438 | Copying freeze files:
2024-10-31 12:06:35 | INFO | __main__:_copy_files:445 | └── Copied freeze directory: _freeze/paper to _freeze/research/papers/2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData/paper
2024-10-31 12:06:35 | INFO | __main__:wrapper:91 | ▶ Saving commit information
2024-10-31 12:06:35 | INFO | __main__:_save_commit:385 | 💾 Saving commit hash: a9f5077d891d5a64816dc18844fbf12e2a2b9dae
2024-10-31 12:06:35 | DEBUG | __main__:_save_commit:388 | Commit hash saved to: research/papers/2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData/last_commit.txt
2024-10-31 12:06:35 | SUCCESS | __main__:process:348 | ✨ Successfully processed paper 2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData
2024-10-31 12:06:35 | INFO | __main__:wrapper:78 | ═════════════════════════════════════════════════════════════════════════════════
2024-10-31 12:06:35 | INFO | __main__:wrapper:70 | ═════════════════════════════ STAGE: Paper Processing ═════════════════════════════
2024-10-31 12:06:35 | INFO | __main__:process:323 | 📑 Processing paper: 2024-10-30_JASA1112_SPI
2024-10-31 12:06:35 | DEBUG | __main__:process:324 | Repository URL: https://github.com/MitchellAcoustics/J2401_JASA_SSID-Single-Index
2024-10-31 12:06:35 | DEBUG | __main__:process:325 | Branch: dev
2024-10-31 12:06:35 | DEBUG | __main__:process:326 | Commit: None
2024-10-31 12:06:36 | INFO | __main__:wrapper:91 | ▶ Checking repository status
2024-10-31 12:06:36 | INFO | __main__:wrapper:91 | ▶ Cloning repository
2024-10-31 12:06:36 | INFO | __main__:_clone_repo:393 | 📥 Cloning: https://github.com/MitchellAcoustics/J2401_JASA_SSID-Single-Index
2024-10-31 12:06:41 | INFO | __main__:wrapper:91 | ▶ Copying files
2024-10-31 12:06:41 | INFO | __main__:_copy_files:413 | 📋 Starting file copy
2024-10-31 12:06:41 | INFO | __main__:wrapper:91 | ▶ Loading Quarto configuration
2024-10-31 12:06:41 | DEBUG | __main__:_load_config:139 | Loaded config:
bibliography: FellowshipRefs-biblatex.bib
execute:
freeze: auto
keep-ipynb: true
format:
elsevier-pdf:
echo: false
hyperrefoptions:
- citecolor=black
journal:
cite-style: authoryear
formatting: preprint
model: 3p
name: Journal of the Acoustical Society of America
keep-tex: false
html:
code-fold: true
comments:
hypothesis: true
self-contained-math: true
toc: true
manuscript:
article: index.qmd
notebooks:
- ./notebooks/SingleIndex-Code.ipynb
- ./notebooks/TargetOptimization.ipynb
project:
output-dir: ./paper/
type: default
2024-10-31 12:06:41 | DEBUG | __main__:_determine_project_type:147 | Determined project type: manuscript
2024-10-31 12:06:41 | DEBUG | __main__:_find_main_doc:177 | Searching for main document
2024-10-31 12:06:41 | SUCCESS | __main__:_find_main_doc:182 | Found main document in manuscript config: index.qmd
2024-10-31 12:06:41 | DEBUG | __main__:__init__:128 | Initialized QuartoProject: type=manuscript, main_doc=index.qmd
2024-10-31 12:06:41 | INFO | __main__:wrapper:91 | ▶ Analyzing project structure
2024-10-31 12:06:41 | DEBUG | __main__:_get_bibliography_files:204 | Collecting bibliography files
2024-10-31 12:06:41 | INFO | __main__:_get_bibliography_files:209 | Found bibliography in config: FellowshipRefs-biblatex.bib
2024-10-31 12:06:41 | INFO | __main__:_get_bibliography_files:215 | Found bibliography files in filesystem:
2024-10-31 12:06:41 | INFO | __main__:_get_bibliography_files:217 | └── FellowshipRefs-biblatex.bib
2024-10-31 12:06:41 | DEBUG | __main__:_get_notebooks:224 | Collecting notebooks for manuscript project
2024-10-31 12:06:41 | INFO | __main__:_get_notebooks:231 | Found notebooks in manuscript config:
2024-10-31 12:06:41 | INFO | __main__:_get_notebooks:233 | └── ./notebooks/SingleIndex-Code.ipynb
2024-10-31 12:06:41 | INFO | __main__:_get_notebooks:233 | └── ./notebooks/TargetOptimization.ipynb
2024-10-31 12:06:41 | INFO | __main__:_get_notebooks:247 | Found embedded notebooks:
2024-10-31 12:06:41 | INFO | __main__:_get_notebooks:249 | └── notebooks/SingleIndex-Code.ipynb
2024-10-31 12:06:41 | INFO | __main__:_get_notebooks:249 | └── notebooks/TargetOptimization.ipynb
2024-10-31 12:06:41 | DEBUG | __main__:_get_support_directories:264 | Collecting support directories
2024-10-31 12:06:41 | INFO | __main__:_get_support_directories:274 | Found support directories:
2024-10-31 12:06:41 | INFO | __main__:_get_support_directories:276 | └── figures
2024-10-31 12:06:41 | INFO | __main__:_get_support_directories:276 | └── notebooks
2024-10-31 12:06:41 | DEBUG | __main__:_get_freeze_directories:281 | Collecting freeze directories for manuscript project
2024-10-31 12:06:41 | INFO | __main__:get_files:164 | 📁 Collected files:
2024-10-31 12:06:41 | INFO | __main__:get_files:165 | └── 📄 Standard files:
2024-10-31 12:06:41 | INFO | __main__:get_files:167 | └── FellowshipRefs-biblatex.bib
2024-10-31 12:06:41 | INFO | __main__:get_files:167 | └── _quarto.yml
2024-10-31 12:06:41 | INFO | __main__:get_files:167 | └── figures
2024-10-31 12:06:41 | INFO | __main__:get_files:167 | └── index.qmd
2024-10-31 12:06:41 | INFO | __main__:get_files:167 | └── notebooks
2024-10-31 12:06:41 | INFO | __main__:get_files:167 | └── notebooks/SingleIndex-Code.ipynb
2024-10-31 12:06:41 | INFO | __main__:get_files:167 | └── notebooks/TargetOptimization.ipynb
2024-10-31 12:06:41 | INFO | __main__:get_files:168 | └── 🧊 Freeze files:
2024-10-31 12:06:41 | INFO | __main__:_copy_files:420 | Copying standard files:
2024-10-31 12:06:41 | INFO | __main__:_copy_files:429 | └── Copied file: notebooks/TargetOptimization.ipynb
2024-10-31 12:06:41 | INFO | __main__:_copy_files:432 | └── Copied directory: figures
2024-10-31 12:06:41 | INFO | __main__:_copy_files:432 | └── Copied directory: notebooks
2024-10-31 12:06:41 | INFO | __main__:_copy_files:429 | └── Copied file: _quarto.yml
2024-10-31 12:06:41 | INFO | __main__:_copy_files:429 | └── Copied file: notebooks/SingleIndex-Code.ipynb
2024-10-31 12:06:41 | INFO | __main__:_copy_files:429 | └── Copied file: FellowshipRefs-biblatex.bib
2024-10-31 12:06:41 | INFO | __main__:_copy_files:429 | └── Copied file: index.qmd
2024-10-31 12:06:41 | INFO | __main__:wrapper:91 | ▶ Saving commit information
2024-10-31 12:06:41 | INFO | __main__:_save_commit:385 | 💾 Saving commit hash: 92d7e82ca139a56def4607a35b14ce6dd1202bdb
2024-10-31 12:06:41 | DEBUG | __main__:_save_commit:388 | Commit hash saved to: research/papers/2024-10-30_JASA1112_SPI/last_commit.txt
2024-10-31 12:06:41 | SUCCESS | __main__:process:348 | ✨ Successfully processed paper 2024-10-30_JASA1112_SPI
2024-10-31 12:06:41 | INFO | __main__:wrapper:78 | ═════════════════════════════════════════════════════════════════════════════════
2024-10-31 12:06:41 | SUCCESS | __main__:main:491 | SUMMARY: ✅ All papers processed successfully (2/2)
2024-10-31 12:07:31 | SUCCESS | __main__:main:469 | ════════════════════════════════════════
2024-10-31 12:07:31 | SUCCESS | __main__:main:470 | 🚀 QUARTO PAPER FETCHER
2024-10-31 12:07:31 | SUCCESS | __main__:main:471 | ════════════════════════════════════════
2024-10-31 12:07:31 | INFO | __main__:wrapper:70 | ═════════════════════════════ STAGE: Paper Processing ═════════════════════════════
2024-10-31 12:07:31 | INFO | __main__:process:323 | 📑 Processing paper: 2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData
2024-10-31 12:07:31 | DEBUG | __main__:process:324 | Repository URL: https://github.com/MitchellAcoustics/JASAEL-HowToAnalyseQuantitativeSoundscapeData.git
2024-10-31 12:07:31 | DEBUG | __main__:process:325 | Branch: None
2024-10-31 12:07:31 | DEBUG | __main__:process:326 | Commit: None
2024-10-31 12:07:32 | INFO | __main__:wrapper:91 | ▶ Checking repository status
2024-10-31 12:07:32 | INFO | __main__:wrapper:91 | ▶ Cloning repository
2024-10-31 12:07:32 | INFO | __main__:_clone_repo:393 | 📥 Cloning: https://github.com/MitchellAcoustics/JASAEL-HowToAnalyseQuantitativeSoundscapeData.git
2024-10-31 12:07:34 | INFO | __main__:wrapper:91 | ▶ Copying files
2024-10-31 12:07:34 | INFO | __main__:_copy_files:413 | 📋 Starting file copy
2024-10-31 12:07:34 | INFO | __main__:wrapper:91 | ▶ Loading Quarto configuration
2024-10-31 12:07:34 | DEBUG | __main__:_load_config:139 | Loaded config:
execute:
freeze: auto
keep-ipynb: true
format:
elsevier-pdf:
echo: false
hyperrefoptions:
- citecolor=black
journal:
cite-style: authoryear
formatting: preprint
model: 3p
name: JASA-EL
keep-tex: false
latex-output-dir: paper/_tex
output-file: paper.pdf
html:
code-fold: true
comments:
hypothesis: true
output-file: paper.html
self-contained-math: true
toc: true
project:
output-dir: paper
type: default
2024-10-31 12:07:34 | DEBUG | __main__:_determine_project_type:147 | Determined project type: default
2024-10-31 12:07:34 | DEBUG | __main__:_find_main_doc:177 | Searching for main document
2024-10-31 12:07:34 | SUCCESS | __main__:_find_main_doc:188 | Found main document with common name: paper.qmd
2024-10-31 12:07:34 | DEBUG | __main__:__init__:128 | Initialized QuartoProject: type=default, main_doc=paper.qmd
2024-10-31 12:07:34 | INFO | __main__:wrapper:91 | ▶ Analyzing project structure
2024-10-31 12:07:34 | DEBUG | __main__:_get_bibliography_files:204 | Collecting bibliography files
2024-10-31 12:07:34 | INFO | __main__:_get_bibliography_files:215 | Found bibliography files in filesystem:
2024-10-31 12:07:34 | INFO | __main__:_get_bibliography_files:217 | └── references.bib
2024-10-31 12:07:34 | DEBUG | __main__:_get_notebooks:224 | Collecting notebooks for default project
2024-10-31 12:07:34 | DEBUG | __main__:_get_support_directories:264 | Collecting support directories
2024-10-31 12:07:34 | INFO | __main__:_get_support_directories:274 | Found support directories:
2024-10-31 12:07:34 | INFO | __main__:_get_support_directories:276 | └── figures
2024-10-31 12:07:34 | DEBUG | __main__:_get_freeze_directories:281 | Collecting freeze directories for default project
2024-10-31 12:07:34 | SUCCESS | __main__:_get_freeze_directories:290 | Found default project freeze directory: _freeze/paper
2024-10-31 12:07:34 | INFO | __main__:get_files:164 | 📁 Collected files:
2024-10-31 12:07:34 | INFO | __main__:get_files:165 | └── 📄 Standard files:
2024-10-31 12:07:34 | INFO | __main__:get_files:167 | └── _quarto.yml
2024-10-31 12:07:34 | INFO | __main__:get_files:167 | └── figures
2024-10-31 12:07:34 | INFO | __main__:get_files:167 | └── paper.qmd
2024-10-31 12:07:34 | INFO | __main__:get_files:167 | └── references.bib
2024-10-31 12:07:34 | INFO | __main__:get_files:168 | └── 🧊 Freeze files:
2024-10-31 12:07:34 | INFO | __main__:get_files:170 | └── _freeze/paper
2024-10-31 12:07:34 | INFO | __main__:_copy_files:420 | Copying standard files:
2024-10-31 12:07:34 | INFO | __main__:_copy_files:429 | └── Copied file: references.bib
2024-10-31 12:07:34 | INFO | __main__:_copy_files:429 | └── Copied file: paper.qmd
2024-10-31 12:07:34 | INFO | __main__:_copy_files:432 | └── Copied directory: figures
2024-10-31 12:07:34 | INFO | __main__:_copy_files:429 | └── Copied file: _quarto.yml
2024-10-31 12:07:34 | INFO | __main__:_copy_files:438 | Copying freeze files:
2024-10-31 12:07:34 | INFO | __main__:_copy_files:445 | └── Copied freeze directory: _freeze/paper to _freeze/research/papers/2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData/paper
2024-10-31 12:07:34 | INFO | __main__:wrapper:91 | ▶ Saving commit information
2024-10-31 12:07:34 | INFO | __main__:_save_commit:385 | 💾 Saving commit hash: a9f5077d891d5a64816dc18844fbf12e2a2b9dae
2024-10-31 12:07:34 | DEBUG | __main__:_save_commit:388 | Commit hash saved to: research/papers/2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData/last_commit.txt
2024-10-31 12:07:34 | SUCCESS | __main__:process:348 | ✨ Successfully processed paper 2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData
2024-10-31 12:07:34 | INFO | __main__:wrapper:78 | ═════════════════════════════════════════════════════════════════════════════════
2024-10-31 12:07:34 | INFO | __main__:wrapper:70 | ═════════════════════════════ STAGE: Paper Processing ═════════════════════════════
2024-10-31 12:07:34 | INFO | __main__:process:323 | 📑 Processing paper: 2024-10-30_JASA1112_SPI
2024-10-31 12:07:34 | DEBUG | __main__:process:324 | Repository URL: https://github.com/MitchellAcoustics/J2401_JASA_SSID-Single-Index
2024-10-31 12:07:34 | DEBUG | __main__:process:325 | Branch: dev
2024-10-31 12:07:34 | DEBUG | __main__:process:326 | Commit: None
2024-10-31 12:07:35 | INFO | __main__:wrapper:91 | ▶ Checking repository status
2024-10-31 12:07:35 | INFO | __main__:wrapper:91 | ▶ Cloning repository
2024-10-31 12:07:35 | INFO | __main__:_clone_repo:393 | 📥 Cloning: https://github.com/MitchellAcoustics/J2401_JASA_SSID-Single-Index
2024-10-31 12:07:42 | INFO | __main__:wrapper:91 | ▶ Copying files
2024-10-31 12:07:42 | INFO | __main__:_copy_files:413 | 📋 Starting file copy
2024-10-31 12:07:42 | INFO | __main__:wrapper:91 | ▶ Loading Quarto configuration
2024-10-31 12:07:42 | DEBUG | __main__:_load_config:139 | Loaded config:
bibliography: FellowshipRefs-biblatex.bib
execute:
freeze: auto
keep-ipynb: true
format:
elsevier-pdf:
echo: false
hyperrefoptions:
- citecolor=black
journal:
cite-style: authoryear
formatting: preprint
model: 3p
name: Journal of the Acoustical Society of America
keep-tex: false
html:
code-fold: true
comments:
hypothesis: true
self-contained-math: true
toc: true
manuscript:
article: index.qmd
notebooks:
- ./notebooks/SingleIndex-Code.ipynb
- ./notebooks/TargetOptimization.ipynb
project:
output-dir: ./paper/
type: default
2024-10-31 12:07:42 | DEBUG | __main__:_determine_project_type:147 | Determined project type: manuscript
2024-10-31 12:07:42 | DEBUG | __main__:_find_main_doc:177 | Searching for main document
2024-10-31 12:07:42 | SUCCESS | __main__:_find_main_doc:182 | Found main document in manuscript config: index.qmd
2024-10-31 12:07:42 | DEBUG | __main__:__init__:128 | Initialized QuartoProject: type=manuscript, main_doc=index.qmd
2024-10-31 12:07:42 | INFO | __main__:wrapper:91 | ▶ Analyzing project structure
2024-10-31 12:07:42 | DEBUG | __main__:_get_bibliography_files:204 | Collecting bibliography files
2024-10-31 12:07:42 | INFO | __main__:_get_bibliography_files:209 | Found bibliography in config: FellowshipRefs-biblatex.bib
2024-10-31 12:07:42 | INFO | __main__:_get_bibliography_files:215 | Found bibliography files in filesystem:
2024-10-31 12:07:42 | INFO | __main__:_get_bibliography_files:217 | └── FellowshipRefs-biblatex.bib
2024-10-31 12:07:42 | DEBUG | __main__:_get_notebooks:224 | Collecting notebooks for manuscript project
2024-10-31 12:07:42 | INFO | __main__:_get_notebooks:231 | Found notebooks in manuscript config:
2024-10-31 12:07:42 | INFO | __main__:_get_notebooks:233 | └── ./notebooks/SingleIndex-Code.ipynb
2024-10-31 12:07:42 | INFO | __main__:_get_notebooks:233 | └── ./notebooks/TargetOptimization.ipynb
2024-10-31 12:07:42 | INFO | __main__:_get_notebooks:247 | Found embedded notebooks:
2024-10-31 12:07:42 | INFO | __main__:_get_notebooks:249 | └── notebooks/SingleIndex-Code.ipynb
2024-10-31 12:07:42 | INFO | __main__:_get_notebooks:249 | └── notebooks/TargetOptimization.ipynb
2024-10-31 12:07:42 | DEBUG | __main__:_get_support_directories:264 | Collecting support directories
2024-10-31 12:07:42 | INFO | __main__:_get_support_directories:274 | Found support directories:
2024-10-31 12:07:42 | INFO | __main__:_get_support_directories:276 | └── figures
2024-10-31 12:07:42 | INFO | __main__:_get_support_directories:276 | └── notebooks
2024-10-31 12:07:42 | DEBUG | __main__:_get_freeze_directories:281 | Collecting freeze directories for manuscript project
2024-10-31 12:07:42 | INFO | __main__:get_files:164 | 📁 Collected files:
2024-10-31 12:07:42 | INFO | __main__:get_files:165 | └── 📄 Standard files:
2024-10-31 12:07:42 | INFO | __main__:get_files:167 | └── FellowshipRefs-biblatex.bib
2024-10-31 12:07:42 | INFO | __main__:get_files:167 | └── _quarto.yml
2024-10-31 12:07:42 | INFO | __main__:get_files:167 | └── figures
2024-10-31 12:07:42 | INFO | __main__:get_files:167 | └── index.qmd
2024-10-31 12:07:42 | INFO | __main__:get_files:167 | └── notebooks
2024-10-31 12:07:42 | INFO | __main__:get_files:167 | └── notebooks/SingleIndex-Code.ipynb
2024-10-31 12:07:42 | INFO | __main__:get_files:167 | └── notebooks/TargetOptimization.ipynb
2024-10-31 12:07:42 | INFO | __main__:get_files:168 | └── 🧊 Freeze files:
2024-10-31 12:07:42 | INFO | __main__:_copy_files:420 | Copying standard files:
2024-10-31 12:07:42 | INFO | __main__:_copy_files:429 | └── Copied file: notebooks/SingleIndex-Code.ipynb
2024-10-31 12:07:42 | INFO | __main__:_copy_files:432 | └── Copied directory: figures
2024-10-31 12:07:42 | INFO | __main__:_copy_files:432 | └── Copied directory: notebooks
2024-10-31 12:07:42 | INFO | __main__:_copy_files:429 | └── Copied file: notebooks/TargetOptimization.ipynb
2024-10-31 12:07:42 | INFO | __main__:_copy_files:429 | └── Copied file: index.qmd
2024-10-31 12:07:42 | INFO | __main__:_copy_files:429 | └── Copied file: FellowshipRefs-biblatex.bib
2024-10-31 12:07:42 | INFO | __main__:_copy_files:429 | └── Copied file: _quarto.yml
2024-10-31 12:07:42 | INFO | __main__:wrapper:91 | ▶ Saving commit information
2024-10-31 12:07:42 | INFO | __main__:_save_commit:385 | 💾 Saving commit hash: 92d7e82ca139a56def4607a35b14ce6dd1202bdb
2024-10-31 12:07:42 | DEBUG | __main__:_save_commit:388 | Commit hash saved to: research/papers/2024-10-30_JASA1112_SPI/last_commit.txt
2024-10-31 12:07:42 | SUCCESS | __main__:process:348 | ✨ Successfully processed paper 2024-10-30_JASA1112_SPI
2024-10-31 12:07:42 | INFO | __main__:wrapper:78 | ═════════════════════════════════════════════════════════════════════════════════
2024-10-31 12:07:42 | SUCCESS | __main__:main:493 | ════════════════════════════════════════
2024-10-31 12:07:42 | SUCCESS | __main__:main:494 | ✅ All papers processed successfully (2/2)
2024-10-31 12:07:42 | SUCCESS | __main__:main:495 | ════════════════════════════════════════
2024-10-31 12:10:49 | SUCCESS | __main__:main:470 |════════════════════════════════════════
2024-10-31 12:10:49 | SUCCESS | __main__:main:471 |🚀 QUARTO PAPER FETCHER
2024-10-31 12:10:49 | SUCCESS | __main__:main:472 |════════════════════════════════════════
2024-10-31 12:10:49 | INFO | __main__:wrapper:70 |═════════════════════════════ STAGE: Paper Processing ═════════════════════════════
2024-10-31 12:10:49 | INFO | __main__:process:323 | 📑 Processing paper: 2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData
2024-10-31 12:10:49 | DEBUG | __main__:process:324 | Repository URL: https://github.com/MitchellAcoustics/JASAEL-HowToAnalyseQuantitativeSoundscapeData.git
2024-10-31 12:10:49 | DEBUG | __main__:process:325 | Branch: None
2024-10-31 12:10:49 | DEBUG | __main__:process:326 | Commit: None
2024-10-31 12:10:49 | INFO | __main__:wrapper:91 | ▶ Checking repository status
2024-10-31 12:10:49 | INFO | __main__:wrapper:91 | ▶ Cloning repository
2024-10-31 12:10:49 | INFO | __main__:_clone_repo:393 | 📥 Cloning: https://github.com/MitchellAcoustics/JASAEL-HowToAnalyseQuantitativeSoundscapeData.git
2024-10-31 12:10:50 | INFO | __main__:wrapper:91 | ▶ Copying files
2024-10-31 12:10:50 | INFO | __main__:_copy_files:413 | 📋 Starting file copy
2024-10-31 12:10:50 | INFO | __main__:wrapper:91 | ▶ Loading Quarto configuration
2024-10-31 12:10:50 | DEBUG | __main__:_load_config:139 | Loaded config:
execute:
freeze: auto
keep-ipynb: true
format:
elsevier-pdf:
echo: false
hyperrefoptions:
- citecolor=black
journal:
cite-style: authoryear
formatting: preprint
model: 3p
name: JASA-EL
keep-tex: false
latex-output-dir: paper/_tex
output-file: paper.pdf
html:
code-fold: true
comments:
hypothesis: true
output-file: paper.html
self-contained-math: true
toc: true
project:
output-dir: paper
type: default
2024-10-31 12:10:50 | DEBUG | __main__:_determine_project_type:147 | Determined project type: default
2024-10-31 12:10:50 | DEBUG | __main__:_find_main_doc:177 | Searching for main document
2024-10-31 12:10:50 | SUCCESS | __main__:_find_main_doc:188 | Found main document with common name: paper.qmd
2024-10-31 12:10:50 | DEBUG | __main__:__init__:128 | Initialized QuartoProject: type=default, main_doc=paper.qmd
2024-10-31 12:10:50 | INFO | __main__:wrapper:91 | ▶ Analyzing project structure
2024-10-31 12:10:50 | DEBUG | __main__:_get_bibliography_files:204 | Collecting bibliography files
2024-10-31 12:10:50 | INFO | __main__:_get_bibliography_files:215 | Found bibliography files in filesystem:
2024-10-31 12:10:50 | INFO | __main__:_get_bibliography_files:217 | └── references.bib
2024-10-31 12:10:50 | DEBUG | __main__:_get_notebooks:224 | Collecting notebooks for default project
2024-10-31 12:10:50 | DEBUG | __main__:_get_support_directories:264 | Collecting support directories
2024-10-31 12:10:50 | INFO | __main__:_get_support_directories:274 | Found support directories:
2024-10-31 12:10:50 | INFO | __main__:_get_support_directories:276 | └── figures
2024-10-31 12:10:50 | DEBUG | __main__:_get_freeze_directories:281 | Collecting freeze directories for default project
2024-10-31 12:10:50 | SUCCESS | __main__:_get_freeze_directories:290 | Found default project freeze directory: _freeze/paper
2024-10-31 12:10:50 | INFO | __main__:get_files:164 | 📁 Collected files:
2024-10-31 12:10:50 | INFO | __main__:get_files:165 | └── 📄 Standard files:
2024-10-31 12:10:50 | INFO | __main__:get_files:167 | └── _quarto.yml
2024-10-31 12:10:50 | INFO | __main__:get_files:167 | └── figures
2024-10-31 12:10:50 | INFO | __main__:get_files:167 | └── paper.qmd
2024-10-31 12:10:50 | INFO | __main__:get_files:167 | └── references.bib
2024-10-31 12:10:50 | INFO | __main__:get_files:168 | └── 🧊 Freeze files:
2024-10-31 12:10:50 | INFO | __main__:get_files:170 | └── _freeze/paper
2024-10-31 12:10:50 | INFO | __main__:_copy_files:420 | Copying standard files:
2024-10-31 12:10:50 | INFO | __main__:_copy_files:429 | └── Copied file: references.bib
2024-10-31 12:10:50 | INFO | __main__:_copy_files:432 | └── Copied directory: figures
2024-10-31 12:10:50 | INFO | __main__:_copy_files:429 | └── Copied file: _quarto.yml
2024-10-31 12:10:50 | INFO | __main__:_copy_files:429 | └── Copied file: paper.qmd
2024-10-31 12:10:50 | INFO | __main__:_copy_files:438 | Copying freeze files:
2024-10-31 12:10:50 | INFO | __main__:_copy_files:445 | └── Copied freeze directory: _freeze/paper to _freeze/research/papers/2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData/paper
2024-10-31 12:10:50 | INFO | __main__:wrapper:91 | ▶ Saving commit information
2024-10-31 12:10:50 | INFO | __main__:_save_commit:385 | 💾 Saving commit hash: a9f5077d891d5a64816dc18844fbf12e2a2b9dae
2024-10-31 12:10:50 | DEBUG | __main__:_save_commit:388 | Commit hash saved to: research/papers/2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData/last_commit.txt
2024-10-31 12:10:50 | SUCCESS | __main__:process:348 | ✨ Successfully processed paper 2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData
2024-10-31 12:10:50 | INFO | __main__:wrapper:78 |═════════════════════════════════════════════════════════════════════════════════
2024-10-31 12:10:50 | INFO | __main__:wrapper:70 |═════════════════════════════ STAGE: Paper Processing ═════════════════════════════
2024-10-31 12:10:50 | INFO | __main__:process:323 | 📑 Processing paper: 2024-10-30_JASA1112_SPI
2024-10-31 12:10:50 | DEBUG | __main__:process:324 | Repository URL: https://github.com/MitchellAcoustics/J2401_JASA_SSID-Single-Index
2024-10-31 12:10:50 | DEBUG | __main__:process:325 | Branch: dev
2024-10-31 12:10:50 | DEBUG | __main__:process:326 | Commit: None
2024-10-31 12:10:50 | INFO | __main__:wrapper:91 | ▶ Checking repository status
2024-10-31 12:10:50 | INFO | __main__:wrapper:91 | ▶ Cloning repository
2024-10-31 12:10:50 | INFO | __main__:_clone_repo:393 | 📥 Cloning: https://github.com/MitchellAcoustics/J2401_JASA_SSID-Single-Index
2024-10-31 12:10:52 | INFO | __main__:wrapper:91 | ▶ Copying files
2024-10-31 12:10:52 | INFO | __main__:_copy_files:413 | 📋 Starting file copy
2024-10-31 12:10:52 | INFO | __main__:wrapper:91 | ▶ Loading Quarto configuration
2024-10-31 12:10:52 | DEBUG | __main__:_load_config:139 | Loaded config:
bibliography: FellowshipRefs-biblatex.bib
execute:
freeze: auto
keep-ipynb: true
format:
elsevier-pdf:
echo: false
hyperrefoptions:
- citecolor=black
journal:
cite-style: authoryear
formatting: preprint
model: 3p
name: Journal of the Acoustical Society of America
keep-tex: false
html:
code-fold: true
comments:
hypothesis: true
self-contained-math: true
toc: true
manuscript:
article: index.qmd
notebooks:
- ./notebooks/SingleIndex-Code.ipynb
- ./notebooks/TargetOptimization.ipynb
project:
output-dir: ./paper/
type: default
2024-10-31 12:10:52 | DEBUG | __main__:_determine_project_type:147 | Determined project type: manuscript
2024-10-31 12:10:52 | DEBUG | __main__:_find_main_doc:177 | Searching for main document
2024-10-31 12:10:52 | SUCCESS | __main__:_find_main_doc:182 | Found main document in manuscript config: index.qmd
2024-10-31 12:10:52 | DEBUG | __main__:__init__:128 | Initialized QuartoProject: type=manuscript, main_doc=index.qmd
2024-10-31 12:10:52 | INFO | __main__:wrapper:91 | ▶ Analyzing project structure
2024-10-31 12:10:52 | DEBUG | __main__:_get_bibliography_files:204 | Collecting bibliography files
2024-10-31 12:10:52 | INFO | __main__:_get_bibliography_files:209 | Found bibliography in config: FellowshipRefs-biblatex.bib
2024-10-31 12:10:52 | INFO | __main__:_get_bibliography_files:215 | Found bibliography files in filesystem:
2024-10-31 12:10:52 | INFO | __main__:_get_bibliography_files:217 | └── FellowshipRefs-biblatex.bib
2024-10-31 12:10:52 | DEBUG | __main__:_get_notebooks:224 | Collecting notebooks for manuscript project
2024-10-31 12:10:52 | INFO | __main__:_get_notebooks:231 | Found notebooks in manuscript config:
2024-10-31 12:10:52 | INFO | __main__:_get_notebooks:233 | └── ./notebooks/SingleIndex-Code.ipynb
2024-10-31 12:10:52 | INFO | __main__:_get_notebooks:233 | └── ./notebooks/TargetOptimization.ipynb
2024-10-31 12:10:52 | INFO | __main__:_get_notebooks:247 | Found embedded notebooks:
2024-10-31 12:10:52 | INFO | __main__:_get_notebooks:249 | └── notebooks/SingleIndex-Code.ipynb
2024-10-31 12:10:52 | INFO | __main__:_get_notebooks:249 | └── notebooks/TargetOptimization.ipynb
2024-10-31 12:10:52 | DEBUG | __main__:_get_support_directories:264 | Collecting support directories
2024-10-31 12:10:52 | INFO | __main__:_get_support_directories:274 | Found support directories:
2024-10-31 12:10:52 | INFO | __main__:_get_support_directories:276 | └── figures
2024-10-31 12:10:52 | INFO | __main__:_get_support_directories:276 | └── notebooks
2024-10-31 12:10:52 | DEBUG | __main__:_get_freeze_directories:281 | Collecting freeze directories for manuscript project
2024-10-31 12:10:52 | INFO | __main__:get_files:164 | 📁 Collected files:
2024-10-31 12:10:52 | INFO | __main__:get_files:165 | └── 📄 Standard files:
2024-10-31 12:10:52 | INFO | __main__:get_files:167 | └── FellowshipRefs-biblatex.bib
2024-10-31 12:10:52 | INFO | __main__:get_files:167 | └── _quarto.yml
2024-10-31 12:10:52 | INFO | __main__:get_files:167 | └── figures
2024-10-31 12:10:52 | INFO | __main__:get_files:167 | └── index.qmd
2024-10-31 12:10:52 | INFO | __main__:get_files:167 | └── notebooks
2024-10-31 12:10:52 | INFO | __main__:get_files:167 | └── notebooks/SingleIndex-Code.ipynb
2024-10-31 12:10:52 | INFO | __main__:get_files:167 | └── notebooks/TargetOptimization.ipynb
2024-10-31 12:10:52 | INFO | __main__:get_files:168 | └── 🧊 Freeze files:
2024-10-31 12:10:52 | INFO | __main__:_copy_files:420 | Copying standard files:
2024-10-31 12:10:52 | INFO | __main__:_copy_files:429 | └── Copied file: FellowshipRefs-biblatex.bib
2024-10-31 12:10:52 | INFO | __main__:_copy_files:429 | └── Copied file: notebooks/SingleIndex-Code.ipynb
2024-10-31 12:10:52 | INFO | __main__:_copy_files:432 | └── Copied directory: notebooks
2024-10-31 12:10:52 | INFO | __main__:_copy_files:429 | └── Copied file: _quarto.yml
2024-10-31 12:10:52 | INFO | __main__:_copy_files:432 | └── Copied directory: figures
2024-10-31 12:10:52 | INFO | __main__:_copy_files:429 | └── Copied file: notebooks/TargetOptimization.ipynb
2024-10-31 12:10:52 | INFO | __main__:_copy_files:429 | └── Copied file: index.qmd
2024-10-31 12:10:52 | INFO | __main__:wrapper:91 | ▶ Saving commit information
2024-10-31 12:10:52 | INFO | __main__:_save_commit:385 | 💾 Saving commit hash: 92d7e82ca139a56def4607a35b14ce6dd1202bdb
2024-10-31 12:10:52 | DEBUG | __main__:_save_commit:388 | Commit hash saved to: research/papers/2024-10-30_JASA1112_SPI/last_commit.txt
2024-10-31 12:10:52 | SUCCESS | __main__:process:348 | ✨ Successfully processed paper 2024-10-30_JASA1112_SPI
2024-10-31 12:10:52 | INFO | __main__:wrapper:78 |═════════════════════════════════════════════════════════════════════════════════
2024-10-31 12:10:52 | SUCCESS | __main__:main:495 |════════════════════════════════════════
2024-10-31 12:10:52 | SUCCESS | __main__:main:496 |✅ All papers processed successfully (2/2)
2024-10-31 12:10:52 | SUCCESS | __main__:main:497 |════════════════════════════════════════
2024-10-31 12:11:45 | SUCCESS | __main__:main:470 |════════════════════════════════════════
2024-10-31 12:11:45 | SUCCESS | __main__:main:471 |🚀 QUARTO PAPER FETCHER
2024-10-31 12:11:45 | SUCCESS | __main__:main:472 |════════════════════════════════════════
2024-10-31 12:11:45 | INFO | __main__:wrapper:70 |═════════════════════════════ STAGE: Paper Processing ═════════════════════════════
2024-10-31 12:11:45 | INFO | __main__:process:323 | 📑 Processing paper: 2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData
2024-10-31 12:11:45 | DEBUG | __main__:process:324 | Repository URL: https://github.com/MitchellAcoustics/JASAEL-HowToAnalyseQuantitativeSoundscapeData.git
2024-10-31 12:11:45 | DEBUG | __main__:process:325 | Branch: None
2024-10-31 12:11:45 | DEBUG | __main__:process:326 | Commit: None
2024-10-31 12:11:45 | INFO | __main__:wrapper:91 | ▶ Checking repository status
2024-10-31 12:11:45 | INFO | __main__:wrapper:91 | ▶ Cloning repository
2024-10-31 12:11:45 | INFO | __main__:_clone_repo:393 | 📥 Cloning: https://github.com/MitchellAcoustics/JASAEL-HowToAnalyseQuantitativeSoundscapeData.git
2024-10-31 12:11:46 | INFO | __main__:wrapper:91 | ▶ Copying files
2024-10-31 12:11:46 | INFO | __main__:_copy_files:413 | 📋 Starting file copy
2024-10-31 12:11:46 | INFO | __main__:wrapper:91 | ▶ Loading Quarto configuration
2024-10-31 12:11:46 | DEBUG | __main__:_load_config:139 | Loaded config:
execute:
freeze: auto
keep-ipynb: true
format:
elsevier-pdf:
echo: false
hyperrefoptions:
- citecolor=black
journal:
cite-style: authoryear
formatting: preprint
model: 3p
name: JASA-EL
keep-tex: false
latex-output-dir: paper/_tex
output-file: paper.pdf
html:
code-fold: true
comments:
hypothesis: true
output-file: paper.html
self-contained-math: true
toc: true
project:
output-dir: paper
type: default
2024-10-31 12:11:46 | DEBUG | __main__:_determine_project_type:147 | Determined project type: default
2024-10-31 12:11:46 | DEBUG | __main__:_find_main_doc:177 | Searching for main document
2024-10-31 12:11:46 | SUCCESS | __main__:_find_main_doc:188 | Found main document with common name: paper.qmd
2024-10-31 12:11:46 | DEBUG | __main__:__init__:128 | Initialized QuartoProject: type=default, main_doc=paper.qmd
2024-10-31 12:11:46 | INFO | __main__:wrapper:91 | ▶ Analyzing project structure
2024-10-31 12:11:46 | DEBUG | __main__:_get_bibliography_files:204 | Collecting bibliography files
2024-10-31 12:11:46 | INFO | __main__:_get_bibliography_files:215 | Found bibliography files in filesystem:
2024-10-31 12:11:46 | INFO | __main__:_get_bibliography_files:217 | └── references.bib
2024-10-31 12:11:46 | DEBUG | __main__:_get_notebooks:224 | Collecting notebooks for default project
2024-10-31 12:11:46 | DEBUG | __main__:_get_support_directories:264 | Collecting support directories
2024-10-31 12:11:46 | INFO | __main__:_get_support_directories:274 | Found support directories:
2024-10-31 12:11:46 | INFO | __main__:_get_support_directories:276 | └── figures
2024-10-31 12:11:46 | DEBUG | __main__:_get_freeze_directories:281 | Collecting freeze directories for default project
2024-10-31 12:11:46 | SUCCESS | __main__:_get_freeze_directories:290 | Found default project freeze directory: _freeze/paper
2024-10-31 12:11:46 | INFO | __main__:get_files:164 | 📁 Collected files:
2024-10-31 12:11:46 | INFO | __main__:get_files:165 | └── 📄 Standard files:
2024-10-31 12:11:46 | INFO | __main__:get_files:167 | └── _quarto.yml
2024-10-31 12:11:46 | INFO | __main__:get_files:167 | └── figures
2024-10-31 12:11:46 | INFO | __main__:get_files:167 | └── paper.qmd
2024-10-31 12:11:46 | INFO | __main__:get_files:167 | └── references.bib
2024-10-31 12:11:46 | INFO | __main__:get_files:168 | └── 🧊 Freeze files:
2024-10-31 12:11:46 | INFO | __main__:get_files:170 | └── _freeze/paper
2024-10-31 12:11:46 | INFO | __main__:_copy_files:420 | Copying standard files:
2024-10-31 12:11:46 | INFO | __main__:_copy_files:429 | └── Copied file: paper.qmd
2024-10-31 12:11:46 | INFO | __main__:_copy_files:429 | └── Copied file: _quarto.yml
2024-10-31 12:11:46 | INFO | __main__:_copy_files:432 | └── Copied directory: figures
2024-10-31 12:11:46 | INFO | __main__:_copy_files:429 | └── Copied file: references.bib
2024-10-31 12:11:46 | INFO | __main__:_copy_files:438 | Copying freeze files:
2024-10-31 12:11:46 | INFO | __main__:_copy_files:445 | └── Copied freeze directory: _freeze/paper to _freeze/research/papers/2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData/paper
2024-10-31 12:11:46 | INFO | __main__:wrapper:91 | ▶ Saving commit information
2024-10-31 12:11:46 | INFO | __main__:_save_commit:385 | 💾 Saving commit hash: a9f5077d891d5a64816dc18844fbf12e2a2b9dae
2024-10-31 12:11:46 | DEBUG | __main__:_save_commit:388 | Commit hash saved to: research/papers/2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData/last_commit.txt
2024-10-31 12:11:46 | SUCCESS | __main__:process:348 | ✨ Successfully processed paper 2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData
2024-10-31 12:11:46 | INFO | __main__:wrapper:78 |═════════════════════════════════════════════════════════════════════════════════
2024-10-31 12:11:46 | INFO | __main__:wrapper:70 |═════════════════════════════ STAGE: Paper Processing ═════════════════════════════
2024-10-31 12:11:46 | INFO | __main__:process:323 | 📑 Processing paper: 2024-10-30_JASA1112_SPI
2024-10-31 12:11:46 | DEBUG | __main__:process:324 | Repository URL: https://github.com/MitchellAcoustics/J2401_JASA_SSID-Single-Index
2024-10-31 12:11:46 | DEBUG | __main__:process:325 | Branch: dev
2024-10-31 12:11:46 | DEBUG | __main__:process:326 | Commit: None
2024-10-31 12:11:46 | INFO | __main__:wrapper:91 | ▶ Checking repository status
2024-10-31 12:11:46 | INFO | __main__:wrapper:91 | ▶ Cloning repository
2024-10-31 12:11:46 | INFO | __main__:_clone_repo:393 | 📥 Cloning: https://github.com/MitchellAcoustics/J2401_JASA_SSID-Single-Index
2024-10-31 12:12:01 | SUCCESS | __main__:main:470 |════════════════════════════════════════
2024-10-31 12:12:01 | SUCCESS | __main__:main:471 |🚀 QUARTO PAPER FETCHER
2024-10-31 12:12:01 | SUCCESS | __main__:main:472 |════════════════════════════════════════
2024-10-31 12:12:01 | INFO | __main__:wrapper:70 |═════════════════════════════ STAGE: Paper Processing ═════════════════════════════
2024-10-31 12:12:01 | INFO | __main__:process:323 | 📑 Processing paper: 2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData
2024-10-31 12:12:01 | DEBUG | __main__:process:324 | Repository URL: https://github.com/MitchellAcoustics/JASAEL-HowToAnalyseQuantitativeSoundscapeData.git
2024-10-31 12:12:01 | DEBUG | __main__:process:325 | Branch: None
2024-10-31 12:12:01 | DEBUG | __main__:process:326 | Commit: None
2024-10-31 12:12:01 | INFO | __main__:wrapper:91 | ▶ Checking repository status
2024-10-31 12:12:01 | INFO | __main__:wrapper:91 | ▶ Cloning repository
2024-10-31 12:12:01 | INFO | __main__:_clone_repo:393 | 📥 Cloning: https://github.com/MitchellAcoustics/JASAEL-HowToAnalyseQuantitativeSoundscapeData.git
2024-10-31 12:12:03 | INFO | __main__:wrapper:91 | ▶ Copying files
2024-10-31 12:12:03 | INFO | __main__:_copy_files:413 | 📋 Starting file copy
2024-10-31 12:12:03 | INFO | __main__:wrapper:91 | ▶ Loading Quarto configuration
2024-10-31 12:12:03 | DEBUG | __main__:_load_config:139 | Loaded config:
execute:
freeze: auto
keep-ipynb: true
format:
elsevier-pdf:
echo: false
hyperrefoptions:
- citecolor=black
journal:
cite-style: authoryear
formatting: preprint
model: 3p
name: JASA-EL
keep-tex: false
latex-output-dir: paper/_tex
output-file: paper.pdf
html:
code-fold: true
comments:
hypothesis: true
output-file: paper.html
self-contained-math: true
toc: true
project:
output-dir: paper
type: default
2024-10-31 12:12:03 | DEBUG | __main__:_determine_project_type:147 | Determined project type: default
2024-10-31 12:12:03 | DEBUG | __main__:_find_main_doc:177 | Searching for main document
2024-10-31 12:12:03 | SUCCESS | __main__:_find_main_doc:188 | Found main document with common name: paper.qmd
2024-10-31 12:12:03 | DEBUG | __main__:__init__:128 | Initialized QuartoProject: type=default, main_doc=paper.qmd
2024-10-31 12:12:03 | INFO | __main__:wrapper:91 | ▶ Analyzing project structure
2024-10-31 12:12:03 | DEBUG | __main__:_get_bibliography_files:204 | Collecting bibliography files
2024-10-31 12:12:03 | INFO | __main__:_get_bibliography_files:215 | Found bibliography files in filesystem:
2024-10-31 12:12:03 | INFO | __main__:_get_bibliography_files:217 | └── references.bib
2024-10-31 12:12:03 | DEBUG | __main__:_get_notebooks:224 | Collecting notebooks for default project
2024-10-31 12:12:03 | DEBUG | __main__:_get_support_directories:264 | Collecting support directories
2024-10-31 12:12:03 | INFO | __main__:_get_support_directories:274 | Found support directories:
2024-10-31 12:12:03 | INFO | __main__:_get_support_directories:276 | └── figures
2024-10-31 12:12:03 | DEBUG | __main__:_get_freeze_directories:281 | Collecting freeze directories for default project
2024-10-31 12:12:03 | SUCCESS | __main__:_get_freeze_directories:290 | Found default project freeze directory: _freeze/paper
2024-10-31 12:12:03 | INFO | __main__:get_files:164 | 📁 Collected files:
2024-10-31 12:12:03 | INFO | __main__:get_files:165 | └── 📄 Standard files:
2024-10-31 12:12:03 | INFO | __main__:get_files:167 | └── _quarto.yml
2024-10-31 12:12:03 | INFO | __main__:get_files:167 | └── figures
2024-10-31 12:12:03 | INFO | __main__:get_files:167 | └── paper.qmd
2024-10-31 12:12:03 | INFO | __main__:get_files:167 | └── references.bib
2024-10-31 12:12:03 | INFO | __main__:get_files:168 | └── 🧊 Freeze files:
2024-10-31 12:12:03 | INFO | __main__:get_files:170 | └── _freeze/paper
2024-10-31 12:12:03 | INFO | __main__:_copy_files:420 | Copying standard files:
2024-10-31 12:12:03 | INFO | __main__:_copy_files:429 | └── Copied file: _quarto.yml
2024-10-31 12:12:03 | INFO | __main__:_copy_files:429 | └── Copied file: references.bib
2024-10-31 12:12:03 | INFO | __main__:_copy_files:432 | └── Copied directory: figures
2024-10-31 12:12:03 | INFO | __main__:_copy_files:429 | └── Copied file: paper.qmd
2024-10-31 12:12:03 | INFO | __main__:_copy_files:438 | Copying freeze files:
2024-10-31 12:12:03 | INFO | __main__:_copy_files:445 | └── Copied freeze directory: _freeze/paper to _freeze/research/papers/2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData/paper
2024-10-31 12:12:03 | INFO | __main__:wrapper:91 | ▶ Saving commit information
2024-10-31 12:12:03 | INFO | __main__:_save_commit:385 | 💾 Saving commit hash: a9f5077d891d5a64816dc18844fbf12e2a2b9dae
2024-10-31 12:12:03 | DEBUG | __main__:_save_commit:388 | Commit hash saved to: research/papers/2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData/last_commit.txt
2024-10-31 12:12:03 | SUCCESS | __main__:process:348 | ✨ Successfully processed paper 2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData
2024-10-31 12:12:03 | INFO | __main__:wrapper:78 |═════════════════════════════════════════════════════════════════════════════════
2024-10-31 12:12:03 | INFO | __main__:wrapper:70 |═════════════════════════════ STAGE: Paper Processing ═════════════════════════════
2024-10-31 12:12:03 | INFO | __main__:process:323 | 📑 Processing paper: 2024-10-30_JASA1112_SPI
2024-10-31 12:12:03 | DEBUG | __main__:process:324 | Repository URL: https://github.com/MitchellAcoustics/J2401_JASA_SSID-Single-Index
2024-10-31 12:12:03 | DEBUG | __main__:process:325 | Branch: dev
2024-10-31 12:12:03 | DEBUG | __main__:process:326 | Commit: None
2024-10-31 12:12:03 | INFO | __main__:wrapper:91 | ▶ Checking repository status
2024-10-31 12:12:03 | INFO | __main__:wrapper:91 | ▶ Cloning repository
2024-10-31 12:12:03 | INFO | __main__:_clone_repo:393 | 📥 Cloning: https://github.com/MitchellAcoustics/J2401_JASA_SSID-Single-Index
2024-10-31 12:12:05 | INFO | __main__:wrapper:91 | ▶ Copying files
2024-10-31 12:12:05 | INFO | __main__:_copy_files:413 | 📋 Starting file copy
2024-10-31 12:12:05 | INFO | __main__:wrapper:91 | ▶ Loading Quarto configuration
2024-10-31 12:12:05 | DEBUG | __main__:_load_config:139 | Loaded config:
bibliography: FellowshipRefs-biblatex.bib
execute:
freeze: auto
keep-ipynb: true
format:
elsevier-pdf:
echo: false
hyperrefoptions:
- citecolor=black
journal:
cite-style: authoryear
formatting: preprint
model: 3p
name: Journal of the Acoustical Society of America
keep-tex: false
html:
code-fold: true
comments:
hypothesis: true
self-contained-math: true
toc: true
manuscript:
article: index.qmd
notebooks:
- ./notebooks/SingleIndex-Code.ipynb
- ./notebooks/TargetOptimization.ipynb
project:
output-dir: ./paper/
type: default
2024-10-31 12:12:05 | DEBUG | __main__:_determine_project_type:147 | Determined project type: manuscript
2024-10-31 12:12:05 | DEBUG | __main__:_find_main_doc:177 | Searching for main document
2024-10-31 12:12:05 | SUCCESS | __main__:_find_main_doc:182 | Found main document in manuscript config: index.qmd
2024-10-31 12:12:05 | DEBUG | __main__:__init__:128 | Initialized QuartoProject: type=manuscript, main_doc=index.qmd
2024-10-31 12:12:05 | INFO | __main__:wrapper:91 | ▶ Analyzing project structure
2024-10-31 12:12:05 | DEBUG | __main__:_get_bibliography_files:204 | Collecting bibliography files
2024-10-31 12:12:05 | INFO | __main__:_get_bibliography_files:209 | Found bibliography in config: FellowshipRefs-biblatex.bib
2024-10-31 12:12:05 | INFO | __main__:_get_bibliography_files:215 | Found bibliography files in filesystem:
2024-10-31 12:12:05 | INFO | __main__:_get_bibliography_files:217 | └── FellowshipRefs-biblatex.bib
2024-10-31 12:12:05 | DEBUG | __main__:_get_notebooks:224 | Collecting notebooks for manuscript project
2024-10-31 12:12:05 | INFO | __main__:_get_notebooks:231 | Found notebooks in manuscript config:
2024-10-31 12:12:05 | INFO | __main__:_get_notebooks:233 | └── ./notebooks/SingleIndex-Code.ipynb
2024-10-31 12:12:05 | INFO | __main__:_get_notebooks:233 | └── ./notebooks/TargetOptimization.ipynb
2024-10-31 12:12:05 | INFO | __main__:_get_notebooks:247 | Found embedded notebooks:
2024-10-31 12:12:05 | INFO | __main__:_get_notebooks:249 | └── notebooks/SingleIndex-Code.ipynb
2024-10-31 12:12:05 | INFO | __main__:_get_notebooks:249 | └── notebooks/TargetOptimization.ipynb
2024-10-31 12:12:05 | DEBUG | __main__:_get_support_directories:264 | Collecting support directories
2024-10-31 12:12:05 | INFO | __main__:_get_support_directories:274 | Found support directories:
2024-10-31 12:12:05 | INFO | __main__:_get_support_directories:276 | └── figures
2024-10-31 12:12:05 | INFO | __main__:_get_support_directories:276 | └── notebooks
2024-10-31 12:12:05 | DEBUG | __main__:_get_freeze_directories:281 | Collecting freeze directories for manuscript project
2024-10-31 12:12:05 | INFO | __main__:get_files:164 | 📁 Collected files:
2024-10-31 12:12:05 | INFO | __main__:get_files:165 | └── 📄 Standard files:
2024-10-31 12:12:05 | INFO | __main__:get_files:167 | └── FellowshipRefs-biblatex.bib
2024-10-31 12:12:05 | INFO | __main__:get_files:167 | └── _quarto.yml
2024-10-31 12:12:05 | INFO | __main__:get_files:167 | └── figures
2024-10-31 12:12:05 | INFO | __main__:get_files:167 | └── index.qmd
2024-10-31 12:12:05 | INFO | __main__:get_files:167 | └── notebooks
2024-10-31 12:12:05 | INFO | __main__:get_files:167 | └── notebooks/SingleIndex-Code.ipynb
2024-10-31 12:12:05 | INFO | __main__:get_files:167 | └── notebooks/TargetOptimization.ipynb
2024-10-31 12:12:05 | INFO | __main__:get_files:168 | └── 🧊 Freeze files:
2024-10-31 12:12:05 | INFO | __main__:_copy_files:420 | Copying standard files:
2024-10-31 12:12:05 | INFO | __main__:_copy_files:429 | └── Copied file: _quarto.yml
2024-10-31 12:12:05 | INFO | __main__:_copy_files:429 | └── Copied file: index.qmd
2024-10-31 12:12:05 | INFO | __main__:_copy_files:432 | └── Copied directory: notebooks
2024-10-31 12:12:05 | INFO | __main__:_copy_files:429 | └── Copied file: notebooks/TargetOptimization.ipynb
2024-10-31 12:12:05 | INFO | __main__:_copy_files:429 | └── Copied file: notebooks/SingleIndex-Code.ipynb
2024-10-31 12:12:05 | INFO | __main__:_copy_files:429 | └── Copied file: FellowshipRefs-biblatex.bib
2024-10-31 12:12:05 | INFO | __main__:_copy_files:432 | └── Copied directory: figures
2024-10-31 12:12:05 | INFO | __main__:wrapper:91 | ▶ Saving commit information
2024-10-31 12:12:05 | INFO | __main__:_save_commit:385 | 💾 Saving commit hash: 92d7e82ca139a56def4607a35b14ce6dd1202bdb
2024-10-31 12:12:05 | DEBUG | __main__:_save_commit:388 | Commit hash saved to: research/papers/2024-10-30_JASA1112_SPI/last_commit.txt
2024-10-31 12:12:05 | SUCCESS | __main__:process:348 | ✨ Successfully processed paper 2024-10-30_JASA1112_SPI
2024-10-31 12:12:05 | INFO | __main__:wrapper:78 |═════════════════════════════════════════════════════════════════════════════════
2024-10-31 12:12:05 | SUCCESS | __main__:main:495 |✅ All papers processed successfully (2/2)
2024-10-31 12:13:45 | INFO | __main__:main:470 |════════════════════════════════════════
2024-10-31 12:13:45 | SUCCESS | __main__:main:471 |🚀 QUARTO PAPER FETCHER
2024-10-31 12:13:45 | INFO | __main__:main:472 |════════════════════════════════════════
2024-10-31 12:13:45 | INFO | __main__:wrapper:70 |═════════════════════════════ STAGE: Paper Processing ═════════════════════════════
2024-10-31 12:13:45 | INFO | __main__:process:323 | 📑 Processing paper: 2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData
2024-10-31 12:13:45 | DEBUG | __main__:process:324 | Repository URL: https://github.com/MitchellAcoustics/JASAEL-HowToAnalyseQuantitativeSoundscapeData.git
2024-10-31 12:13:45 | DEBUG | __main__:process:325 | Branch: None
2024-10-31 12:13:45 | DEBUG | __main__:process:326 | Commit: None
2024-10-31 12:13:45 | INFO | __main__:wrapper:91 | ▶ Checking repository status
2024-10-31 12:13:45 | INFO | __main__:wrapper:91 | ▶ Cloning repository
2024-10-31 12:13:45 | INFO | __main__:_clone_repo:393 | 📥 Cloning: https://github.com/MitchellAcoustics/JASAEL-HowToAnalyseQuantitativeSoundscapeData.git
2024-10-31 12:15:44 | INFO | __main__:main:470 |================================================================================
2024-10-31 12:15:44 | SUCCESS | __main__:main:471 |🚀 QUARTO PAPER FETCHER
2024-10-31 12:15:44 | INFO | __main__:main:472 |================================================================================
2024-10-31 12:15:44 | INFO | __main__:wrapper:70 |═════════════════════════════ STAGE: Paper Processing ═════════════════════════════
2024-10-31 12:15:44 | INFO | __main__:process:323 | 📑 Processing paper: 2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData
2024-10-31 12:15:44 | DEBUG | __main__:process:324 | Repository URL: https://github.com/MitchellAcoustics/JASAEL-HowToAnalyseQuantitativeSoundscapeData.git
2024-10-31 12:15:44 | DEBUG | __main__:process:325 | Branch: None
2024-10-31 12:15:44 | DEBUG | __main__:process:326 | Commit: None
2024-10-31 12:15:44 | INFO | __main__:wrapper:91 | ▶ Checking repository status
2024-10-31 12:15:44 | INFO | __main__:wrapper:91 | ▶ Cloning repository
2024-10-31 12:15:44 | INFO | __main__:_clone_repo:393 | 📥 Cloning: https://github.com/MitchellAcoustics/JASAEL-HowToAnalyseQuantitativeSoundscapeData.git
2024-10-31 12:15:46 | INFO | __main__:wrapper:91 | ▶ Copying files
2024-10-31 12:15:46 | INFO | __main__:_copy_files:413 | 📋 Starting file copy
2024-10-31 12:15:46 | INFO | __main__:wrapper:91 | ▶ Loading Quarto configuration
2024-10-31 12:15:46 | DEBUG | __main__:_load_config:139 | Loaded config:
execute:
freeze: auto
keep-ipynb: true
format:
elsevier-pdf:
echo: false
hyperrefoptions:
- citecolor=black
journal:
cite-style: authoryear
formatting: preprint
model: 3p
name: JASA-EL
keep-tex: false
latex-output-dir: paper/_tex
output-file: paper.pdf
html:
code-fold: true
comments:
hypothesis: true
output-file: paper.html
self-contained-math: true
toc: true
project:
output-dir: paper
type: default
2024-10-31 12:15:46 | DEBUG | __main__:_determine_project_type:147 | Determined project type: default
2024-10-31 12:15:46 | DEBUG | __main__:_find_main_doc:177 | Searching for main document
2024-10-31 12:15:46 | SUCCESS | __main__:_find_main_doc:188 | Found main document with common name: paper.qmd
2024-10-31 12:15:46 | DEBUG | __main__:__init__:128 | Initialized QuartoProject: type=default, main_doc=paper.qmd
2024-10-31 12:15:46 | INFO | __main__:wrapper:91 | ▶ Analyzing project structure
2024-10-31 12:15:46 | DEBUG | __main__:_get_bibliography_files:204 | Collecting bibliography files
2024-10-31 12:15:46 | INFO | __main__:_get_bibliography_files:215 | Found bibliography files in filesystem:
2024-10-31 12:15:46 | INFO | __main__:_get_bibliography_files:217 | └── references.bib
2024-10-31 12:15:46 | DEBUG | __main__:_get_notebooks:224 | Collecting notebooks for default project
2024-10-31 12:15:46 | DEBUG | __main__:_get_support_directories:264 | Collecting support directories
2024-10-31 12:15:46 | INFO | __main__:_get_support_directories:274 | Found support directories:
2024-10-31 12:15:46 | INFO | __main__:_get_support_directories:276 | └── figures
2024-10-31 12:15:46 | DEBUG | __main__:_get_freeze_directories:281 | Collecting freeze directories for default project
2024-10-31 12:15:46 | SUCCESS | __main__:_get_freeze_directories:290 | Found default project freeze directory: _freeze/paper
2024-10-31 12:15:46 | INFO | __main__:get_files:164 | 📁 Collected files:
2024-10-31 12:15:46 | INFO | __main__:get_files:165 | └── 📄 Standard files:
2024-10-31 12:15:46 | INFO | __main__:get_files:167 | └── _quarto.yml
2024-10-31 12:15:46 | INFO | __main__:get_files:167 | └── figures
2024-10-31 12:15:46 | INFO | __main__:get_files:167 | └── paper.qmd
2024-10-31 12:15:46 | INFO | __main__:get_files:167 | └── references.bib
2024-10-31 12:15:46 | INFO | __main__:get_files:168 | └── 🧊 Freeze files:
2024-10-31 12:15:46 | INFO | __main__:get_files:170 | └── _freeze/paper
2024-10-31 12:15:46 | INFO | __main__:_copy_files:420 | Copying standard files:
2024-10-31 12:15:46 | INFO | __main__:_copy_files:429 | └── Copied file: references.bib
2024-10-31 12:15:46 | INFO | __main__:_copy_files:429 | └── Copied file: _quarto.yml
2024-10-31 12:15:46 | INFO | __main__:_copy_files:432 | └── Copied directory: figures
2024-10-31 12:15:46 | INFO | __main__:_copy_files:429 | └── Copied file: paper.qmd
2024-10-31 12:15:46 | INFO | __main__:_copy_files:438 | Copying freeze files:
2024-10-31 12:15:46 | INFO | __main__:_copy_files:445 | └── Copied freeze directory: _freeze/paper to _freeze/research/papers/2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData/paper
2024-10-31 12:15:46 | INFO | __main__:wrapper:91 | ▶ Saving commit information
2024-10-31 12:15:46 | INFO | __main__:_save_commit:385 | 💾 Saving commit hash: a9f5077d891d5a64816dc18844fbf12e2a2b9dae
2024-10-31 12:15:46 | DEBUG | __main__:_save_commit:388 | Commit hash saved to: research/papers/2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData/last_commit.txt
2024-10-31 12:15:46 | SUCCESS | __main__:process:348 | ✨ Successfully processed paper 2022-03-16_JASAEL-HowToAnalyseQuantitativeSoundscapeData
2024-10-31 12:15:46 | INFO | __main__:wrapper:78 |═════════════════════════════════════════════════════════════════════════════════
2024-10-31 12:15:46 | INFO | __main__:wrapper:70 |═════════════════════════════ STAGE: Paper Processing ═════════════════════════════
2024-10-31 12:15:46 | INFO | __main__:process:323 | 📑 Processing paper: 2024-10-30_JASA1112_SPI