Looking for a compatible dependency package version list

[vitkl]

Hi @sokratiag

I tried following the installation instructions in a clean conda environment but ran into compatibility issues with both default and paper-specific dependency lists. I am looking for a list of compatible dependency packages - would you happen to have a recipe that installs everything necessary, ideally including Scanpy?

[sokratiag]

Hi @vitkl,

Thanks for contacting us. II will look into it and let you know.

[NuhaSaud]

Hi @vitkl,
I have updated GPcounts to be compatible with the latest versions of tensorflow and gpflow and tested it with python 3.11. Note that I restructured the code where I moved the functions related to GP in GP_NB_ZINB file and the functions related to RNA-seq analysis in rna_seq_gp file.
Please let me know if you face any issues.
Thank you for using GPcounts.

[kinnaryshah]

I am also running into issues with this - would you be able to provide a list of packages with versions and dependencies?