Skip to content

Issues installing dependencies on different OS systems #7

@mahirhkhan

Description

@mahirhkhan

Hi developers, thanks for releasing this, looking forward to trying this tool!

I wanted to inform you of some challenges I experienced when installing the required dependencies to run the prediction script.

I used the following commands:

git clone https://github.com/MIDIconsortium/BrainAge.git
conda create --name clin_brainage_env python=3.8
conda activate clin_brainage_env
cd BrainAge
pip install -r requirements.txt

I managed to get everything installed and running on CentOS 7, but I had some hiccups. Namely, the install failed when installing ANTsPy. I had to remove ANTsPy from the requirements and download it using pip install antspyx instead. I wanted to give you all a heads up in case this is a common issue.

I then tried on an M1 Mac running Ventura 13.6.6, and the initial issue was that the specified version of pandas is not compatible. When I tried changing the version to 1.3.0, numpy was not installing correctly. Have you tested this on Apple Silicon? If so, what is your recommended way to install this?

Thanks,
Mahir

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions