From 33f1791d992c5f181a00e5bfba35a850e4c6881e Mon Sep 17 00:00:00 2001 From: Khushi Phougat Date: Mon, 19 Jan 2026 18:06:24 +0000 Subject: [PATCH 1/4] MAINT: Remove nose references --- .gitignore | 1 - benchmarks/asv.conf.json | 1 - testsuite/MDAnalysisTests/utils/test_streamio.py | 2 -- 3 files changed, 4 deletions(-) diff --git a/.gitignore b/.gitignore index e9f3571ca8e..cf3cc8c87d0 100644 --- a/.gitignore +++ b/.gitignore @@ -23,7 +23,6 @@ examples/output.txt # ignore coverage files .coverage* !.coveragerc -.noseids htmlcov # ignore trajectory offset caches .adk_oplsaa.trr_offsets.pkl diff --git a/benchmarks/asv.conf.json b/benchmarks/asv.conf.json index e3a8fd900a0..3906cf6defe 100644 --- a/benchmarks/asv.conf.json +++ b/benchmarks/asv.conf.json @@ -33,7 +33,6 @@ "scipy": [], "six": [], "pytest": [], - "nose": [], "mock": [], "MDAnalysisTests": [], }, diff --git a/testsuite/MDAnalysisTests/utils/test_streamio.py b/testsuite/MDAnalysisTests/utils/test_streamio.py index 56a421dda7f..869ea317ff4 100644 --- a/testsuite/MDAnalysisTests/utils/test_streamio.py +++ b/testsuite/MDAnalysisTests/utils/test_streamio.py @@ -214,8 +214,6 @@ def test_func(self, func): def test_join(self, tmpdir, funcname="join"): # join not included because of different call signature - # but added first argument for the sake of it showing up in the verbose - # nose output ns = self.create_NamedStream() fn = self.textname reference = str(tmpdir.join(fn)) From a1c0297b689a97b071d0daf7f8ad69c917b0280c Mon Sep 17 00:00:00 2001 From: Khushi Phougat Date: Mon, 19 Jan 2026 18:29:47 +0000 Subject: [PATCH 2/4] MAINT: Add name to AUTHORS --- package/AUTHORS | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/package/AUTHORS b/package/AUTHORS index e23f2afcf2c..bd76d20e893 100644 --- a/package/AUTHORS +++ b/package/AUTHORS @@ -265,7 +265,9 @@ Chronological list of authors - Raúl Lois-Cuns - Pranay Pelapkar - Shreejan Dolai - +2026 + - Khushi Phougat + External code ------------- From d411b3124f625fc33b4934e54aaf44a4e682a2d5 Mon Sep 17 00:00:00 2001 From: Khushi Phougat Date: Mon, 19 Jan 2026 18:50:20 +0000 Subject: [PATCH 3/4] MAINT: Add name to AUTHORS --- package/AUTHORS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/package/AUTHORS b/package/AUTHORS index 0f4dd493ebb..fbd4a0b76a1 100644 --- a/package/AUTHORS +++ b/package/AUTHORS @@ -269,7 +269,7 @@ Chronological list of authors - Brady Johnston 2026 - Mohammad Ayaan - + - Khushi Phougat External code ------------- From 160f71161f24b210a2591d679cad062178e549ea Mon Sep 17 00:00:00 2001 From: Khushi Phougat Date: Thu, 22 Jan 2026 06:38:40 +0000 Subject: [PATCH 4/4] Fix: Add newline to AUTHORS --- package/AUTHORS | 1 + 1 file changed, 1 insertion(+) diff --git a/package/AUTHORS b/package/AUTHORS index fbd4a0b76a1..973f1dd7943 100644 --- a/package/AUTHORS +++ b/package/AUTHORS @@ -270,6 +270,7 @@ Chronological list of authors 2026 - Mohammad Ayaan - Khushi Phougat + External code -------------