packages updated

LiaOb21 · LiaOb21 · commit f39d0a8307cd · 2025-05-14T13:28:45.000+01:00
diff --git a/workflow/envs/arima_mapping_pipeline.yaml b/workflow/envs/arima_mapping_pipeline.yaml
@@ -3,6 +3,6 @@ channels:
   - bioconda
 
 dependencies:
-  - bwa=0.7.18
-  - samtools=1.20
-  - picard=3.2.0
+  - bwa=0.7.19
+  - samtools=1.21
+  - picard=3.4.0
diff --git a/workflow/envs/bandage.yaml b/workflow/envs/bandage.yaml
@@ -3,4 +3,4 @@ channels:
   - bioconda
 
 dependencies:
-  - bandage=0.8.1
+  - bandage=0.9.0
diff --git a/workflow/envs/busco.yaml b/workflow/envs/busco.yaml
@@ -3,4 +3,4 @@ channels:
   - bioconda
 
 dependencies:
-  - busco=5.7.1
+  - busco=5.8.3
diff --git a/workflow/envs/fastp.yaml b/workflow/envs/fastp.yaml
@@ -3,4 +3,4 @@ channels:
   - bioconda
 
 dependencies:
-  - fastp=0.23.4
+  - fastp=0.24.1
diff --git a/workflow/envs/fcsgx.yaml b/workflow/envs/fcsgx.yaml
@@ -3,4 +3,4 @@ channels:
   - bioconda
 
 dependencies:
-  - ncbi-fcs-gx=0.5.4
+  - ncbi-fcs-gx=0.5.5
diff --git a/workflow/envs/gfastats.yaml b/workflow/envs/gfastats.yaml
@@ -3,4 +3,4 @@ channels:
   - bioconda
 
 dependencies:
-  - gfastats=1.3.6
+  - gfastats=1.3.11
diff --git a/workflow/envs/hifiasm.yaml b/workflow/envs/hifiasm.yaml
@@ -3,4 +3,4 @@ channels:
   - bioconda
 
 dependencies:
-  - hifiasm=0.19.9
+  - hifiasm=0.25.0
diff --git a/workflow/envs/nanoplot.yaml b/workflow/envs/nanoplot.yaml
@@ -3,4 +3,4 @@ channels:
   - bioconda
 
 dependencies:
-  - nanoplot=1.43.0
+  - nanoplot=1.44.1
diff --git a/workflow/envs/quast.yaml b/workflow/envs/quast.yaml
@@ -3,4 +3,4 @@ channels:
   - bioconda
 
 dependencies:
-  - quast=5.2.0
+  - quast=5.3.0
diff --git a/workflow/envs/yahs.yaml b/workflow/envs/yahs.yaml
@@ -3,5 +3,5 @@ channels:
   - bioconda
 
 dependencies:
-  - yahs=1.2a.2
-  - samtools=1.19
+  - yahs=1.2.2
+  - samtools=1.21
