Error in processing SIO

[micheldumontier]

Hi,
I tried to use this with SIO (http://semanticscience.org/ontology/sio.owl), but it fails with these messages

 java  -jar oba-3.5.1-jar-with-dependencies.jar -c sio.config.yaml

 [main] WARN org.semanticweb.owlapi.util.SAXParsers - http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl, error message: Property 'http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit' is not recognized.
 [main] WARN org.semanticweb.owlapi.util.SAXParsers - entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl, error message: Property 'entityExpansionLimit' is not recognized.
 [main] INFO org.semanticweb.owlapi.rdf.rdfxml.parser.AbstractState - Notice: root element does not have an xml:base. Relative IRIs will be resolved against file:/C:/code/oba/outputs/sio/ontology0.owl
 [main] INFO org.semanticweb.owlapi.rdf.rdfxml.parser.OWLRDFConsumer - Unparsed triple: http://purl.org/dc/elements/1.1/identifier -> _:genid-nodeid-arc67d7b1023 -> ":arc67d7b1023"^^xsd:string

 ...
 Exception in thread "main" java.lang.NullPointerException
    at edu.isi.oba.Mapper.add_owlclass_to_openapi(Mapper.java:157)
    at edu.isi.oba.Mapper.createSchemas(Mapper.java:128)
    at edu.isi.oba.Oba.main(Oba.java:69)

`

[dgarijo]

Hmm, this ontology is a little tricky. OBA may be confused because we usually expect the properties to be defined with proper domain and range, not using the "some" axiom. However, it should work, so I will look this up. Thanks for the pointer!